RNA–Protein interactions for RNA: ENST00000554005.1

FOXN3-206, Transcript of forkhead box N3, humanhuman

TSL 5

Gene FOXN3, Length 450 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-206ENST00000554005 AEBP2Q6ZN18 517 aaPredicted RBP24.58■■□□□ 1.53
FOXN3-206ENST00000554005 CHIC1Q5VXU3 224 aa24.32■■□□□ 1.48
FOXN3-206ENST00000554005 PHF23Q9BUL5 403 aaPredicted RBP21.45■■□□□ 1.02
FOXN3-206ENST00000554005 SENP3Q9H4L4 574 aaPredicted RBP20.77■□□□□ 0.92
FOXN3-206ENST00000554005 PLPPR3Q6T4P5 718 aa19.88■□□□□ 0.77
FOXN3-206ENST00000554005 FOXD1Q16676 465 aa19.25■□□□□ 0.67
FOXN3-206ENST00000554005 PPP6R1Q9UPN7 881 aa18.81■□□□□ 0.6
FOXN3-206ENST00000554005 ADRA2BP18089 450 aa18.8■□□□□ 0.6
FOXN3-206ENST00000554005 PIAS4Q8N2W9 510 aaPredicted RBP18.23■□□□□ 0.51
FOXN3-206ENST00000554005 MSH5O43196 834 aa17.59■□□□□ 0.41
FOXN3-206ENST00000554005 KCNA4P22459 653 aa17.58■□□□□ 0.4
FOXN3-206ENST00000554005 PPP4R3CPQ6ZMV5 832 aa17.57■□□□□ 0.4
FOXN3-206ENST00000554005 NCBP3Q53F19 620 aaKnown RBP17.19■□□□□ 0.34
FOXN3-206ENST00000554005 SCAF1Q9H7N4 1312 aaKnown RBP17.15■□□□□ 0.34
FOXN3-206ENST00000554005 CNKSR2Q8WXI2 1034 aa16.99■□□□□ 0.31
FOXN3-206ENST00000554005 NPM3O75607 178 aaKnown RBP16.98■□□□□ 0.31
FOXN3-206ENST00000554005 MAPK8IP2Q13387 824 aaPredicted RBP16.96■□□□□ 0.31
FOXN3-206ENST00000554005 SLC4A1APQ9BWU0 796 aaKnown RBP16.79■□□□□ 0.28
FOXN3-206ENST00000554005 EHMT2Q96KQ7 1210 aa16.71■□□□□ 0.27
FOXN3-206ENST00000554005 DMRT2Q9Y5R5 561 aa16.65■□□□□ 0.26
FOXN3-206ENST00000554005 RNF216Q9NWF9 866 aaPredicted RBP16.58■□□□□ 0.24
FOXN3-206ENST00000554005 HOXD11P31277 338 aaPredicted RBP16.44■□□□□ 0.22
FOXN3-206ENST00000554005 DNAJC5BQ9UF47 199 aa16.44■□□□□ 0.22
FOXN3-206ENST00000554005 CSRNP3Q8WYN3 585 aa16.37■□□□□ 0.21
FOXN3-206ENST00000554005 ZBTB22O15209 634 aa16.21■□□□□ 0.19
FOXN3-206ENST00000554005 FOXD4L1Q9NU39 408 aa16.07■□□□□ 0.16
FOXN3-206ENST00000554005 SLC4A2P04920 1241 aa15.96■□□□□ 0.15
FOXN3-206ENST00000554005 DCAF8L1A6NGE4 600 aa15.88■□□□□ 0.13
FOXN3-206ENST00000554005 MYCNP04198 464 aaPredicted RBP15.66■□□□□ 0.1
FOXN3-206ENST00000554005 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.64■□□□□ 0.098e-18■□□□□ 9.2
FOXN3-206ENST00000554005 ATXN8OSP0DMR3 200 aa15.46■□□□□ 0.07
FOXN3-206ENST00000554005 U3KPZ7 1027 aaPredicted RBP15.46■□□□□ 0.07
FOXN3-206ENST00000554005 POTEDQ86YR6 584 aa15.44■□□□□ 0.06
FOXN3-206ENST00000554005 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.34■□□□□ 0.05
FOXN3-206ENST00000554005 HNRNPUL2Q1KMD3 747 aaKnown RBP15.34■□□□□ 0.05
FOXN3-206ENST00000554005 SAMD1Q6SPF0 538 aaPredicted RBP15.32■□□□□ 0.04
FOXN3-206ENST00000554005 ATF5Q9Y2D1 282 aaPredicted RBP15.25■□□□□ 0.03
FOXN3-206ENST00000554005 RNF39Q9H2S5 420 aa15.13■□□□□ 0.01
FOXN3-206ENST00000554005 APLP2Q06481 763 aa15.08■□□□□ 0
FOXN3-206ENST00000554005 C1QBPQ07021 282 aaKnown RBP14.95□□□□□ -0.02
FOXN3-206ENST00000554005 ZNF219Q9P2Y4 722 aaPredicted RBP14.95□□□□□ -0.02
FOXN3-206ENST00000554005 SPINK5Q9NQ38 1064 aaPredicted RBP14.93□□□□□ -0.02
FOXN3-206ENST00000554005 TRHP20396 242 aaPredicted RBP14.84□□□□□ -0.03
FOXN3-206ENST00000554005 CAPN15O75808 1086 aa14.82□□□□□ -0.04
FOXN3-206ENST00000554005 FKBP8Q14318 412 aa14.76□□□□□ -0.05
FOXN3-206ENST00000554005 POLA2Q14181 598 aa14.68□□□□□ -0.06
FOXN3-206ENST00000554005 MKRN4PQ13434 485 aaPredicted RBP14.61□□□□□ -0.07
FOXN3-206ENST00000554005 ABCB7O75027 752 aa14.59□□□□□ -0.07
FOXN3-206ENST00000554005 FBLN2P98095 1184 aa14.54□□□□□ -0.08
FOXN3-206ENST00000554005 DSG3P32926 999 aa14.51□□□□□ -0.09
FOXN3-206ENST00000554005 CACNB1Q02641 598 aaPredicted RBP14.46□□□□□ -0.09
FOXN3-206ENST00000554005 ZBTB12Q9Y330 459 aaPredicted RBP14.45□□□□□ -0.1
FOXN3-206ENST00000554005 SPDYE4A6NLX3 237 aa14.42□□□□□ -0.1
FOXN3-206ENST00000554005 PROM2Q8N271 834 aa14.26□□□□□ -0.13
FOXN3-206ENST00000554005 OSCARQ8IYS5 282 aa14.19□□□□□ -0.14
FOXN3-206ENST00000554005 FBXO3Q9UK99 471 aa14.12□□□□□ -0.15
FOXN3-206ENST00000554005 SPDYE2BA6NHP3 402 aa14.1□□□□□ -0.15
FOXN3-206ENST00000554005 SPDYE6P0CI01 402 aa14.1□□□□□ -0.15
FOXN3-206ENST00000554005 SPDYE2Q495Y8 402 aa14.1□□□□□ -0.15
FOXN3-206ENST00000554005 ZNF692Q9BU19 519 aaPredicted RBP14.09□□□□□ -0.15
FOXN3-206ENST00000554005 RTN4Q9NQC3 1192 aaKnown RBP14.06□□□□□ -0.16
FOXN3-206ENST00000554005 SSUH2Q9Y2M2 353 aa14.06□□□□□ -0.16
FOXN3-206ENST00000554005 AMER1Q5JTC6 1135 aaPredicted RBP14.05□□□□□ -0.16
FOXN3-206ENST00000554005 VASPP50552 380 aaPredicted RBP13.95□□□□□ -0.18
FOXN3-206ENST00000554005 PABPN1Q86U42 306 aaKnown RBP eCLIP13.93□□□□□ -0.18
FOXN3-206ENST00000554005 IFNLR1Q8IU57 520 aaPredicted RBP13.79□□□□□ -0.2
FOXN3-206ENST00000554005 RBM42Q9BTD8 480 aaKnown RBP13.79□□□□□ -0.2
FOXN3-206ENST00000554005 STAG3Q9UJ98 1225 aa13.79□□□□□ -0.2
FOXN3-206ENST00000554005 AKT1S1Q96B36 256 aa13.71□□□□□ -0.21
FOXN3-206ENST00000554005 PLCD3Q8N3E9 789 aa13.64□□□□□ -0.23
FOXN3-206ENST00000554005 MIER1Q8N108 512 aa13.61□□□□□ -0.23
FOXN3-206ENST00000554005 KLHL34Q8N239 644 aa13.6□□□□□ -0.23
FOXN3-206ENST00000554005 SPDYE1Q8NFV5 336 aaPredicted RBP13.6□□□□□ -0.23
FOXN3-206ENST00000554005 REM2Q8IYK8 340 aaPredicted RBP13.59□□□□□ -0.23
FOXN3-206ENST00000554005 SPOCK2Q92563 424 aa13.55□□□□□ -0.24
FOXN3-206ENST00000554005 CLEC11AQ9Y240 323 aa13.51□□□□□ -0.25
FOXN3-206ENST00000554005 PLEKHG5O94827 1062 aa13.49□□□□□ -0.25
FOXN3-206ENST00000554005 PKD2Q13563 968 aa13.47□□□□□ -0.25
FOXN3-206ENST00000554005 ZBTB47Q9UFB7 747 aaPredicted RBP13.45□□□□□ -0.26
FOXN3-206ENST00000554005 PITPNM1O00562 1244 aa13.44□□□□□ -0.26
FOXN3-206ENST00000554005 PRR29P0C7W0 189 aa13.43□□□□□ -0.26
FOXN3-206ENST00000554005 CREBZFQ9NS37 354 aa13.38□□□□□ -0.27
FOXN3-206ENST00000554005 MNX1P50219 401 aaPredicted RBP13.3□□□□□ -0.28
FOXN3-206ENST00000554005 ECM2O94769 699 aaPredicted RBP13.29□□□□□ -0.28
FOXN3-206ENST00000554005 CIZ1Q9ULV3 898 aaPredicted RBP13.28□□□□□ -0.28
FOXN3-206ENST00000554005 NUBP1P53384 320 aa13.27□□□□□ -0.29
FOXN3-206ENST00000554005 DCAF8L2P0C7V8 631 aa13.25□□□□□ -0.29
FOXN3-206ENST00000554005 SLC24A1O60721 1099 aa13.24□□□□□ -0.29
FOXN3-206ENST00000554005 RGL2O15211 777 aa13.18□□□□□ -0.3
FOXN3-206ENST00000554005 GSE1Q14687 1217 aa13.18□□□□□ -0.3
FOXN3-206ENST00000554005 CHADLQ6NUI6 762 aa13.17□□□□□ -0.3
FOXN3-206ENST00000554005 TRIM41Q8WV44 630 aa13.16□□□□□ -0.3
FOXN3-206ENST00000554005 RASEFQ8IZ41 740 aa13.14□□□□□ -0.31
FOXN3-206ENST00000554005 NPM1P06748 294 aaKnown RBP eCLIP13.13□□□□□ -0.31
FOXN3-206ENST00000554005 DCAF8Q5TAQ9 597 aa13.13□□□□□ -0.31
FOXN3-206ENST00000554005 FAM212AQ96EL1 285 aa13.13□□□□□ -0.31
FOXN3-206ENST00000554005 FXR2P51116 673 aaKnown RBP eCLIP13.11□□□□□ -0.31
FOXN3-206ENST00000554005 CHRDL2Q6WN34 429 aa13.1□□□□□ -0.31
FOXN3-206ENST00000554005 PRKAR2AP13861 404 aaKnown RBP13.09□□□□□ -0.31
FOXN3-206ENST00000554005 FARP1Q9Y4F1 1045 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms