RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 NISCHQ9Y2I1 1504 aa30.22■■■□□ 2.43
ACTN1-211ENST00000553882 SHROOM4Q9ULL8 1493 aa25.94■■□□□ 1.74
ACTN1-211ENST00000553882 CCDC180Q9P1Z9 1646 aa25.62■■□□□ 1.69
ACTN1-211ENST00000553882 ZCCHC6Q5VYS8 1495 aaKnown RBP25.54■■□□□ 1.68
ACTN1-211ENST00000553882 SUPT5HO00267 1087 aaKnown RBP25.42■■□□□ 1.66
ACTN1-211ENST00000553882 DCAF8L2P0C7V8 631 aa25.28■■□□□ 1.64
ACTN1-211ENST00000553882 DCAF1Q9Y4B6 1507 aa24.7■■□□□ 1.54
ACTN1-211ENST00000553882 CHIC1Q5VXU3 224 aa24.62■■□□□ 1.53
ACTN1-211ENST00000553882 MYO15BQ96JP2 1530 aa24.54■■□□□ 1.52
ACTN1-211ENST00000553882 SCRIBQ14160 1630 aa24.16■■□□□ 1.46
ACTN1-211ENST00000553882 ABCC9O60706 1549 aa24.1■■□□□ 1.45
ACTN1-211ENST00000553882 LOC105371045A0A1W2PR82 267 aa23.97■■□□□ 1.43
ACTN1-211ENST00000553882 RSF1Q96T23 1441 aaPredicted RBP23.94■■□□□ 1.42
ACTN1-211ENST00000553882 PCGF6Q9BYE7 350 aa23.91■■□□□ 1.42
ACTN1-211ENST00000553882 HRCP23327 699 aa23.81■■□□□ 1.4
ACTN1-211ENST00000553882 NACADO15069 1562 aa23.72■■□□□ 1.39
ACTN1-211ENST00000553882 RB1CC1Q8TDY2 1594 aa23.72■■□□□ 1.39
ACTN1-211ENST00000553882 CECR2Q9BXF3 1484 aa23.64■■□□□ 1.38
ACTN1-211ENST00000553882 TRIM41Q8WV44 630 aa23.63■■□□□ 1.37
ACTN1-211ENST00000553882 MROH2BQ7Z745 1585 aa23.53■■□□□ 1.36
ACTN1-211ENST00000553882 FAM9AQ8IZU1 332 aaPredicted RBP23.52■■□□□ 1.36
ACTN1-211ENST00000553882 PPARGC1BQ86YN6 1023 aaKnown RBP23.43■■□□□ 1.34
ACTN1-211ENST00000553882 WIZO95785 1651 aa23.41■■□□□ 1.34
ACTN1-211ENST00000553882 EHMT2Q96KQ7 1210 aa23.4■■□□□ 1.34
ACTN1-211ENST00000553882 TRIM26Q12899 539 aaPredicted RBP23.37■■□□□ 1.33
ACTN1-211ENST00000553882 BAZ1AQ9NRL2 1556 aaPredicted RBP23.2■■□□□ 1.3
ACTN1-211ENST00000553882 UNC13AQ9UPW8 1703 aa23.04■■□□□ 1.28
ACTN1-211ENST00000553882 SMARCA4P51532 1647 aa23.02■■□□□ 1.28
ACTN1-211ENST00000553882 EIF4G1Q04637 1599 aaKnown RBP23.01■■□□□ 1.27
ACTN1-211ENST00000553882 TOP2AP11388 1531 aaKnown RBP22.98■■□□□ 1.27
ACTN1-211ENST00000553882 CCDC88BA6NC98 1476 aa22.94■■□□□ 1.26
ACTN1-211ENST00000553882 PABPN1Q86U42 306 aaKnown RBP eCLIP22.94■■□□□ 1.26
ACTN1-211ENST00000553882 ABCC8Q09428 1581 aa22.93■■□□□ 1.26
ACTN1-211ENST00000553882 SMARCA2P51531 1590 aa22.88■■□□□ 1.25
ACTN1-211ENST00000553882 ZEB1P37275 1124 aaPredicted RBP22.78■■□□□ 1.24
ACTN1-211ENST00000553882 BICRAQ9NZM4 1560 aa22.75■■□□□ 1.23
ACTN1-211ENST00000553882 SOGA1O94964 1423 aa22.71■■□□□ 1.23
ACTN1-211ENST00000553882 TTBK1Q5TCY1 1321 aaPredicted RBP22.63■■□□□ 1.21
ACTN1-211ENST00000553882 RUSC2Q8N2Y8 1516 aa22.6■■□□□ 1.21
ACTN1-211ENST00000553882 CEP162Q5TB80 1403 aa22.57■■□□□ 1.2
ACTN1-211ENST00000553882 CSRNP3Q8WYN3 585 aa22.56■■□□□ 1.2
ACTN1-211ENST00000553882 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.54■■□□□ 1.2
ACTN1-211ENST00000553882 UBTFP17480 764 aaKnown RBP22.54■■□□□ 1.2
ACTN1-211ENST00000553882 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
ACTN1-211ENST00000553882 WRNQ14191 1432 aaPredicted RBP eCLIP22.5■■□□□ 1.19
ACTN1-211ENST00000553882 TNIKQ9UKE5 1360 aa22.48■■□□□ 1.19
ACTN1-211ENST00000553882 EEA1Q15075 1411 aa22.47■■□□□ 1.19
ACTN1-211ENST00000553882 CCER1Q8TC90 406 aaPredicted RBP22.45■■□□□ 1.19
ACTN1-211ENST00000553882 ATAD2BQ9ULI0 1458 aa22.45■■□□□ 1.18
ACTN1-211ENST00000553882 BAZ1BQ9UIG0 1483 aaKnown RBP22.41■■□□□ 1.18
ACTN1-211ENST00000553882 SYNJ1O43426 1573 aa22.39■■□□□ 1.17
ACTN1-211ENST00000553882 GOLGA3Q08378 1498 aa22.37■■□□□ 1.17
ACTN1-211ENST00000553882 CEP164Q9UPV0 1460 aa22.24■■□□□ 1.15
ACTN1-211ENST00000553882 RANGAP1P46060 587 aaPredicted RBP22.2■■□□□ 1.14
ACTN1-211ENST00000553882 KIF21BO75037 1637 aa22.17■■□□□ 1.14
ACTN1-211ENST00000553882 CLIP1P30622 1438 aa22.16■■□□□ 1.14
ACTN1-211ENST00000553882 RAPGEF2Q9Y4G8 1499 aa22.14■■□□□ 1.13
ACTN1-211ENST00000553882 TOP2BQ02880 1626 aa22.07■■□□□ 1.12
ACTN1-211ENST00000553882 HNRNPUL2Q1KMD3 747 aaKnown RBP22.05■■□□□ 1.12
ACTN1-211ENST00000553882 VPS8Q8N3P4 1428 aa22.02■■□□□ 1.12
ACTN1-211ENST00000553882 APLP2Q06481 763 aa22■■□□□ 1.11
ACTN1-211ENST00000553882 NCAPD3P42695 1498 aa21.98■■□□□ 1.11
ACTN1-211ENST00000553882 DIEXFQ68CQ4 756 aaKnown RBP21.97■■□□□ 1.11
ACTN1-211ENST00000553882 BIVM-ERCC5R4GMW8 1640 aa21.96■■□□□ 1.11
ACTN1-211ENST00000553882 SCAF1Q9H7N4 1312 aaKnown RBP21.96■■□□□ 1.11
ACTN1-211ENST00000553882 HMGXB3Q12766 1538 aa21.95■■□□□ 1.1
ACTN1-211ENST00000553882 CUX1P39880 1505 aa21.9■■□□□ 1.1
ACTN1-211ENST00000553882 PRXQ9BXM0 1461 aa21.87■■□□□ 1.09
ACTN1-211ENST00000553882 CFTRP13569 1480 aa21.82■■□□□ 1.08
ACTN1-211ENST00000553882 ERICH3Q5RHP9 1530 aa21.82■■□□□ 1.08
ACTN1-211ENST00000553882 KIF27Q86VH2 1401 aa21.8■■□□□ 1.08
ACTN1-211ENST00000553882 ZNF316A6NFI3 1004 aaPredicted RBP21.77■■□□□ 1.08
ACTN1-211ENST00000553882 ARAP1Q96P48 1450 aa21.77■■□□□ 1.08
ACTN1-211ENST00000553882 NEUROD1Q13562 356 aa21.76■■□□□ 1.07
ACTN1-211ENST00000553882 KANK4Q5T7N3 995 aaPredicted RBP21.74■■□□□ 1.07
ACTN1-211ENST00000553882 ACIN1Q9UKV3 1341 aaKnown RBP21.73■■□□□ 1.07
ACTN1-211ENST00000553882 CUX2O14529 1486 aa21.63■■□□□ 1.05
ACTN1-211ENST00000553882 CENPBP07199 599 aaPredicted RBP21.61■■□□□ 1.05
ACTN1-211ENST00000553882 CADPSQ9ULU8 1353 aa21.61■■□□□ 1.05
ACTN1-211ENST00000553882 ARHGAP35Q9NRY4 1499 aa21.6■■□□□ 1.05
ACTN1-211ENST00000553882 IGF1RP08069 1367 aa21.57■■□□□ 1.04
ACTN1-211ENST00000553882 PRDM2Q13029 1718 aa21.57■■□□□ 1.04
ACTN1-211ENST00000553882 YTHDC1Q96MU7 727 aaKnown RBP21.54■■□□□ 1.04
ACTN1-211ENST00000553882 GTF3C3Q9Y5Q9 886 aa21.53■■□□□ 1.04
ACTN1-211ENST00000553882 FGD5Q6ZNL6 1462 aa21.53■■□□□ 1.04
ACTN1-211ENST00000553882 ITGAEP38570 1179 aa21.52■■□□□ 1.04
ACTN1-211ENST00000553882 DHX57Q6P158 1386 aaKnown RBP21.52■■□□□ 1.03
ACTN1-211ENST00000553882 MIER1Q8N108 512 aa21.51■■□□□ 1.03
ACTN1-211ENST00000553882 CARMIL1Q5VZK9 1371 aa21.49■■□□□ 1.03
ACTN1-211ENST00000553882 RRBP1Q9P2E9 1410 aaKnown RBP21.49■■□□□ 1.03
ACTN1-211ENST00000553882 CC2D2AQ9P2K1 1620 aa21.48■■□□□ 1.03
ACTN1-211ENST00000553882 CCNB3Q8WWL7 1395 aa21.45■■□□□ 1.02
ACTN1-211ENST00000553882 FANCD2Q9BXW9 1451 aa21.42■■□□□ 1.02
ACTN1-211ENST00000553882 CLSPNQ9HAW4 1339 aa21.41■■□□□ 1.02
ACTN1-211ENST00000553882 P3H3Q8IVL6 736 aa21.41■■□□□ 1.02
ACTN1-211ENST00000553882 RAD54L2Q9Y4B4 1467 aa21.35■■□□□ 1.01
ACTN1-211ENST00000553882 ATP1B4Q9UN42 357 aaPredicted RBP21.35■■□□□ 1.01
ACTN1-211ENST00000553882 TIAM1Q13009 1591 aa21.33■■□□□ 1.01
ACTN1-211ENST00000553882 NESP48681 1621 aa21.32■■□□□ 1
ACTN1-211ENST00000553882 PELP1Q8IZL8 1130 aaKnown RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms