RNA–Protein interactions for RNA: ENST00000553704.2

LINC-ROR-201, Transcript of long intergenic non-protein coding RNA, regulator of reprogramming, humanhuman

TSL 1 (best) BASIC

Gene LINC-ROR, Length 2,603 nt, Biotype lincRNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC-ROR-201ENST00000553704 NISCHQ9Y2I1 1504 aa14.43□□□□□ -0.1
LINC-ROR-201ENST00000553704 SHROOM4Q9ULL8 1493 aa12.35□□□□□ -0.43
LINC-ROR-201ENST00000553704 CCDC180Q9P1Z9 1646 aa12.28□□□□□ -0.44
LINC-ROR-201ENST00000553704 ZCCHC6Q5VYS8 1495 aaKnown RBP12.24□□□□□ -0.45
LINC-ROR-201ENST00000553704 SUPT5HO00267 1087 aaKnown RBP12.07□□□□□ -0.48
LINC-ROR-201ENST00000553704 DCAF8L2P0C7V8 631 aa11.87□□□□□ -0.51
LINC-ROR-201ENST00000553704 MYO15BQ96JP2 1530 aa11.85□□□□□ -0.51
LINC-ROR-201ENST00000553704 DCAF1Q9Y4B6 1507 aa11.81□□□□□ -0.52
LINC-ROR-201ENST00000553704 CHIC1Q5VXU3 224 aa11.76□□□□□ -0.53
LINC-ROR-201ENST00000553704 ABCC9O60706 1549 aa11.59□□□□□ -0.55
LINC-ROR-201ENST00000553704 SCRIBQ14160 1630 aa11.55□□□□□ -0.56
LINC-ROR-201ENST00000553704 HRCP23327 699 aa11.46□□□□□ -0.57
LINC-ROR-201ENST00000553704 PCGF6Q9BYE7 350 aa11.43□□□□□ -0.58
LINC-ROR-201ENST00000553704 RSF1Q96T23 1441 aaPredicted RBP11.43□□□□□ -0.58
LINC-ROR-201ENST00000553704 LOC105371045A0A1W2PR82 267 aa11.43□□□□□ -0.58
LINC-ROR-201ENST00000553704 RB1CC1Q8TDY2 1594 aa11.4□□□□□ -0.58
LINC-ROR-201ENST00000553704 NACADO15069 1562 aa11.29□□□□□ -0.6
LINC-ROR-201ENST00000553704 PPARGC1BQ86YN6 1023 aaKnown RBP11.29□□□□□ -0.6
LINC-ROR-201ENST00000553704 CECR2Q9BXF3 1484 aa11.28□□□□□ -0.6
LINC-ROR-201ENST00000553704 MROH2BQ7Z745 1585 aa11.25□□□□□ -0.61
LINC-ROR-201ENST00000553704 WIZO95785 1651 aa11.22□□□□□ -0.61
LINC-ROR-201ENST00000553704 TRIM41Q8WV44 630 aa11.2□□□□□ -0.62
LINC-ROR-201ENST00000553704 TRIM26Q12899 539 aaPredicted RBP11.17□□□□□ -0.62
LINC-ROR-201ENST00000553704 FAM9AQ8IZU1 332 aaPredicted RBP11.17□□□□□ -0.62
LINC-ROR-201ENST00000553704 BAZ1AQ9NRL2 1556 aaPredicted RBP11.14□□□□□ -0.63
LINC-ROR-201ENST00000553704 EIF4G1Q04637 1599 aaKnown RBP11.13□□□□□ -0.63
LINC-ROR-201ENST00000553704 EHMT2Q96KQ7 1210 aa11.1□□□□□ -0.63
LINC-ROR-201ENST00000553704 UNC13AQ9UPW8 1703 aa11.07□□□□□ -0.64
LINC-ROR-201ENST00000553704 SMARCA4P51532 1647 aa11.02□□□□□ -0.65
LINC-ROR-201ENST00000553704 TOP2AP11388 1531 aaKnown RBP11.01□□□□□ -0.65
LINC-ROR-201ENST00000553704 ABCC8Q09428 1581 aa10.99□□□□□ -0.65
LINC-ROR-201ENST00000553704 SMARCA2P51531 1590 aa10.97□□□□□ -0.65
LINC-ROR-201ENST00000553704 CCDC88BA6NC98 1476 aa10.95□□□□□ -0.66
LINC-ROR-201ENST00000553704 ZEB1P37275 1124 aaPredicted RBP10.88□□□□□ -0.67
LINC-ROR-201ENST00000553704 BICRAQ9NZM4 1560 aa10.88□□□□□ -0.67
LINC-ROR-201ENST00000553704 SOGA1O94964 1423 aa10.85□□□□□ -0.67
LINC-ROR-201ENST00000553704 RUSC2Q8N2Y8 1516 aa10.82□□□□□ -0.68
LINC-ROR-201ENST00000553704 CEP162Q5TB80 1403 aa10.8□□□□□ -0.68
LINC-ROR-201ENST00000553704 PABPN1Q86U42 306 aaKnown RBP eCLIP10.8□□□□□ -0.68
LINC-ROR-201ENST00000553704 WRNQ14191 1432 aaPredicted RBP eCLIP10.78□□□□□ -0.68
LINC-ROR-201ENST00000553704 PEG3Q9GZU2 1588 aa10.78□□□□□ -0.68
LINC-ROR-201ENST00000553704 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.77□□□□□ -0.69
LINC-ROR-201ENST00000553704 TTBK1Q5TCY1 1321 aaPredicted RBP10.76□□□□□ -0.69
LINC-ROR-201ENST00000553704 SYNJ1O43426 1573 aa10.75□□□□□ -0.69
LINC-ROR-201ENST00000553704 TNIKQ9UKE5 1360 aa10.74□□□□□ -0.69
LINC-ROR-201ENST00000553704 EEA1Q15075 1411 aa10.72□□□□□ -0.69
LINC-ROR-201ENST00000553704 GOLGA3Q08378 1498 aa10.7□□□□□ -0.7
LINC-ROR-201ENST00000553704 CSRNP3Q8WYN3 585 aa10.7□□□□□ -0.7
LINC-ROR-201ENST00000553704 CCER1Q8TC90 406 aaPredicted RBP10.69□□□□□ -0.7
LINC-ROR-201ENST00000553704 ATAD2BQ9ULI0 1458 aa10.68□□□□□ -0.7
LINC-ROR-201ENST00000553704 KIF21BO75037 1637 aa10.66□□□□□ -0.7
LINC-ROR-201ENST00000553704 UBTFP17480 764 aaKnown RBP10.66□□□□□ -0.7
LINC-ROR-201ENST00000553704 BAZ1BQ9UIG0 1483 aaKnown RBP10.65□□□□□ -0.7
LINC-ROR-201ENST00000553704 SCAF1Q9H7N4 1312 aaKnown RBP10.63□□□□□ -0.71
LINC-ROR-201ENST00000553704 CEP164Q9UPV0 1460 aa10.63□□□□□ -0.71
LINC-ROR-201ENST00000553704 RAPGEF2Q9Y4G8 1499 aa10.59□□□□□ -0.71
LINC-ROR-201ENST00000553704 CLIP1P30622 1438 aa10.57□□□□□ -0.72
LINC-ROR-201ENST00000553704 TOP2BQ02880 1626 aa10.57□□□□□ -0.72
LINC-ROR-201ENST00000553704 BIVM-ERCC5R4GMW8 1640 aa10.56□□□□□ -0.72
LINC-ROR-201ENST00000553704 VPS8Q8N3P4 1428 aa10.54□□□□□ -0.72
LINC-ROR-201ENST00000553704 DIEXFQ68CQ4 756 aaKnown RBP10.51□□□□□ -0.73
LINC-ROR-201ENST00000553704 RANGAP1P46060 587 aaPredicted RBP10.49□□□□□ -0.73
LINC-ROR-201ENST00000553704 HNRNPUL2Q1KMD3 747 aaKnown RBP10.49□□□□□ -0.73
LINC-ROR-201ENST00000553704 NEUROD1Q13562 356 aa10.48□□□□□ -0.73
LINC-ROR-201ENST00000553704 HMGXB3Q12766 1538 aa10.48□□□□□ -0.73
LINC-ROR-201ENST00000553704 CUX1P39880 1505 aa10.47□□□□□ -0.73
LINC-ROR-201ENST00000553704 ACIN1Q9UKV3 1341 aaKnown RBP10.46□□□□□ -0.73
LINC-ROR-201ENST00000553704 ERICH3Q5RHP9 1530 aa10.46□□□□□ -0.73
LINC-ROR-201ENST00000553704 ARAP1Q96P48 1450 aa10.45□□□□□ -0.74
LINC-ROR-201ENST00000553704 PRXQ9BXM0 1461 aa10.45□□□□□ -0.74
LINC-ROR-201ENST00000553704 NCAPD3P42695 1498 aa10.43□□□□□ -0.74
LINC-ROR-201ENST00000553704 ZNF316A6NFI3 1004 aaPredicted RBP10.42□□□□□ -0.74
LINC-ROR-201ENST00000553704 PRDM2Q13029 1718 aa10.39□□□□□ -0.75
LINC-ROR-201ENST00000553704 CFTRP13569 1480 aa10.38□□□□□ -0.75
LINC-ROR-201ENST00000553704 APLP2Q06481 763 aa10.38□□□□□ -0.75
LINC-ROR-201ENST00000553704 KIF27Q86VH2 1401 aa10.36□□□□□ -0.75
LINC-ROR-201ENST00000553704 KANK4Q5T7N3 995 aaPredicted RBP10.36□□□□□ -0.75
LINC-ROR-201ENST00000553704 GTF3C3Q9Y5Q9 886 aa10.35□□□□□ -0.75
LINC-ROR-201ENST00000553704 ARHGAP35Q9NRY4 1499 aa10.34□□□□□ -0.75
LINC-ROR-201ENST00000553704 CENPBP07199 599 aaPredicted RBP10.34□□□□□ -0.75
LINC-ROR-201ENST00000553704 SLC24A1O60721 1099 aa10.32□□□□□ -0.76
LINC-ROR-201ENST00000553704 DHX57Q6P158 1386 aaKnown RBP10.32□□□□□ -0.76
LINC-ROR-201ENST00000553704 MIER1Q8N108 512 aa10.31□□□□□ -0.76
LINC-ROR-201ENST00000553704 YTHDC1Q96MU7 727 aaKnown RBP10.31□□□□□ -0.76
LINC-ROR-201ENST00000553704 PELP1Q8IZL8 1130 aaKnown RBP10.3□□□□□ -0.76
LINC-ROR-201ENST00000553704 RRBP1Q9P2E9 1410 aaKnown RBP10.3□□□□□ -0.76
LINC-ROR-201ENST00000553704 CUX2O14529 1486 aa10.29□□□□□ -0.76
LINC-ROR-201ENST00000553704 FGD5Q6ZNL6 1462 aa10.27□□□□□ -0.77
LINC-ROR-201ENST00000553704 TIAM1Q13009 1591 aa10.25□□□□□ -0.77
LINC-ROR-201ENST00000553704 IGF1RP08069 1367 aa10.25□□□□□ -0.77
LINC-ROR-201ENST00000553704 CCNB3Q8WWL7 1395 aa10.24□□□□□ -0.77
LINC-ROR-201ENST00000553704 CADPSQ9ULU8 1353 aa10.23□□□□□ -0.77
LINC-ROR-201ENST00000553704 CLSPNQ9HAW4 1339 aa10.22□□□□□ -0.77
LINC-ROR-201ENST00000553704 CC2D2AQ9P2K1 1620 aa10.21□□□□□ -0.77
LINC-ROR-201ENST00000553704 PCF11O94913 1555 aaKnown RBP10.21□□□□□ -0.78
LINC-ROR-201ENST00000553704 CFAP43Q8NDM7 1665 aa10.2□□□□□ -0.78
LINC-ROR-201ENST00000553704 CARMIL1Q5VZK9 1371 aa10.2□□□□□ -0.78
LINC-ROR-201ENST00000553704 ITGAEP38570 1179 aa10.2□□□□□ -0.78
LINC-ROR-201ENST00000553704 MAPKBP1O60336 1514 aa10.19□□□□□ -0.78
LINC-ROR-201ENST00000553704 MAP3K1Q13233 1512 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms