RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 NISCHQ9Y2I1 1504 aa11.32□□□□□ -0.6
LIMA1-215ENST00000552823 DCAF8L2P0C7V8 631 aa10.24□□□□□ -0.77
LIMA1-215ENST00000552823 SHROOM4Q9ULL8 1493 aa10.2□□□□□ -0.78
LIMA1-215ENST00000552823 SUPT5HO00267 1087 aaKnown RBP10.01□□□□□ -0.81
LIMA1-215ENST00000552823 EHMT2Q96KQ7 1210 aa9.5□□□□□ -0.89
LIMA1-215ENST00000552823 ZCCHC6Q5VYS8 1495 aaKnown RBP9.48□□□□□ -0.89
LIMA1-215ENST00000552823 CHIC1Q5VXU3 224 aa9.46□□□□□ -0.89
LIMA1-215ENST00000552823 AEBP2Q6ZN18 517 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-215ENST00000552823 ABCC9O60706 1549 aa9.4□□□□□ -0.9
LIMA1-215ENST00000552823 CCDC180Q9P1Z9 1646 aa9.37□□□□□ -0.91
LIMA1-215ENST00000552823 FAM9AQ8IZU1 332 aaPredicted RBP9.36□□□□□ -0.91
LIMA1-215ENST00000552823 LOC105371045A0A1W2PR82 267 aa9.34□□□□□ -0.91
LIMA1-215ENST00000552823 PCGF6Q9BYE7 350 aa9.23□□□□□ -0.93
LIMA1-215ENST00000552823 MYO15BQ96JP2 1530 aa9.23□□□□□ -0.93
LIMA1-215ENST00000552823 SCRIBQ14160 1630 aa9.21□□□□□ -0.93
LIMA1-215ENST00000552823 PABPN1Q86U42 306 aaKnown RBP eCLIP9.18□□□□□ -0.94
LIMA1-215ENST00000552823 TRIM41Q8WV44 630 aa9.16□□□□□ -0.94
LIMA1-215ENST00000552823 PPARGC1BQ86YN6 1023 aaKnown RBP9.14□□□□□ -0.95
LIMA1-215ENST00000552823 TTBK1Q5TCY1 1321 aaPredicted RBP9.11□□□□□ -0.95
LIMA1-215ENST00000552823 CECR2Q9BXF3 1484 aa9.05□□□□□ -0.96
LIMA1-215ENST00000552823 RSF1Q96T23 1441 aaPredicted RBP9.04□□□□□ -0.96
LIMA1-215ENST00000552823 DCAF1Q9Y4B6 1507 aa9.01□□□□□ -0.97
LIMA1-215ENST00000552823 RANGAP1P46060 587 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-215ENST00000552823 MROH2BQ7Z745 1585 aa8.91□□□□□ -0.98
LIMA1-215ENST00000552823 HRCP23327 699 aa8.91□□□□□ -0.98
LIMA1-215ENST00000552823 RB1CC1Q8TDY2 1594 aa8.91□□□□□ -0.98
LIMA1-215ENST00000552823 NACADO15069 1562 aa8.85□□□□□ -0.99
LIMA1-215ENST00000552823 UBTFP17480 764 aaKnown RBP8.85□□□□□ -0.99
LIMA1-215ENST00000552823 TRIM26Q12899 539 aaPredicted RBP8.83□□□□□ -1
LIMA1-215ENST00000552823 WIZO95785 1651 aa8.83□□□□□ -1
LIMA1-215ENST00000552823 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-215ENST00000552823 ABCC8Q09428 1581 aa8.72□□□□□ -1.01
LIMA1-215ENST00000552823 CCDC88BA6NC98 1476 aa8.7□□□□□ -1.02
LIMA1-215ENST00000552823 CCER1Q8TC90 406 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-215ENST00000552823 SOGA1O94964 1423 aa8.68□□□□□ -1.02
LIMA1-215ENST00000552823 CSRNP3Q8WYN3 585 aa8.67□□□□□ -1.02
LIMA1-215ENST00000552823 BAZ1AQ9NRL2 1556 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-215ENST00000552823 HNRNPUL2Q1KMD3 747 aaKnown RBP8.65□□□□□ -1.02
LIMA1-215ENST00000552823 RUSC2Q8N2Y8 1516 aa8.65□□□□□ -1.02
LIMA1-215ENST00000552823 SMARCA4P51532 1647 aa8.6□□□□□ -1.03
LIMA1-215ENST00000552823 ATP1B4Q9UN42 357 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-215ENST00000552823 APLP2Q06481 763 aa8.59□□□□□ -1.03
LIMA1-215ENST00000552823 ITGAEP38570 1179 aa8.57□□□□□ -1.04
LIMA1-215ENST00000552823 TOP2AP11388 1531 aaKnown RBP8.56□□□□□ -1.04
LIMA1-215ENST00000552823 UNC13AQ9UPW8 1703 aa8.55□□□□□ -1.04
LIMA1-215ENST00000552823 SMARCA2P51531 1590 aa8.55□□□□□ -1.04
LIMA1-215ENST00000552823 BICRAQ9NZM4 1560 aa8.55□□□□□ -1.04
LIMA1-215ENST00000552823 WRNQ14191 1432 aaPredicted RBP eCLIP8.54□□□□□ -1.04
LIMA1-215ENST00000552823 BAZ1BQ9UIG0 1483 aaKnown RBP8.54□□□□□ -1.04
LIMA1-215ENST00000552823 P3H3Q8IVL6 736 aa8.53□□□□□ -1.04
LIMA1-215ENST00000552823 CEP162Q5TB80 1403 aa8.52□□□□□ -1.05
LIMA1-215ENST00000552823 ATAD2BQ9ULI0 1458 aa8.52□□□□□ -1.05
LIMA1-215ENST00000552823 ZEB1P37275 1124 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-215ENST00000552823 DNAJC5BQ9UF47 199 aa8.47□□□□□ -1.05
LIMA1-215ENST00000552823 PHF23Q9BUL5 403 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-215ENST00000552823 TNIKQ9UKE5 1360 aa8.43□□□□□ -1.06
LIMA1-215ENST00000552823 YTHDC1Q96MU7 727 aaKnown RBP8.43□□□□□ -1.06
LIMA1-215ENST00000552823 CLIP1P30622 1438 aa8.42□□□□□ -1.06
LIMA1-215ENST00000552823 ARID3CA6NKF2 412 aa8.41□□□□□ -1.06
LIMA1-215ENST00000552823 RAPGEF2Q9Y4G8 1499 aa8.41□□□□□ -1.06
LIMA1-215ENST00000552823 GOLGA3Q08378 1498 aa8.4□□□□□ -1.06
LIMA1-215ENST00000552823 SYNJ1O43426 1573 aa8.4□□□□□ -1.06
LIMA1-215ENST00000552823 KANK4Q5T7N3 995 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-215ENST00000552823 EIF4G1Q04637 1599 aaKnown RBP8.37□□□□□ -1.07
LIMA1-215ENST00000552823 DIEXFQ68CQ4 756 aaKnown RBP8.36□□□□□ -1.07
LIMA1-215ENST00000552823 FAM50AQ14320 339 aaKnown RBP8.35□□□□□ -1.07
LIMA1-215ENST00000552823 CEP164Q9UPV0 1460 aa8.34□□□□□ -1.08
LIMA1-215ENST00000552823 EEA1Q15075 1411 aa8.33□□□□□ -1.08
LIMA1-215ENST00000552823 CUX2O14529 1486 aa8.31□□□□□ -1.08
LIMA1-215ENST00000552823 NEUROD1Q13562 356 aa8.3□□□□□ -1.08
LIMA1-215ENST00000552823 NCAPD3P42695 1498 aa8.29□□□□□ -1.08
LIMA1-215ENST00000552823 NESP48681 1621 aa8.28□□□□□ -1.08
LIMA1-215ENST00000552823 KIF27Q86VH2 1401 aa8.28□□□□□ -1.08
LIMA1-215ENST00000552823 CADPSQ9ULU8 1353 aa8.27□□□□□ -1.09
LIMA1-215ENST00000552823 TDRD9Q8NDG6 1382 aaKnown RBP8.26□□□□□ -1.09
LIMA1-215ENST00000552823 VPS8Q8N3P4 1428 aa8.26□□□□□ -1.09
LIMA1-215ENST00000552823 CUX1P39880 1505 aa8.26□□□□□ -1.09
LIMA1-215ENST00000552823 ZNF316A6NFI3 1004 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-215ENST00000552823 FBLN2P98095 1184 aa8.26□□□□□ -1.09
LIMA1-215ENST00000552823 RAD54L2Q9Y4B4 1467 aa8.25□□□□□ -1.09
LIMA1-215ENST00000552823 HIRIP3Q9BW71 556 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-215ENST00000552823 CARMIL1Q5VZK9 1371 aa8.25□□□□□ -1.09
LIMA1-215ENST00000552823 PEG3Q9GZU2 1588 aa8.24□□□□□ -1.09
LIMA1-215ENST00000552823 SCAF1Q9H7N4 1312 aaKnown RBP8.23□□□□□ -1.09
LIMA1-215ENST00000552823 IGF1RP08069 1367 aa8.23□□□□□ -1.09
LIMA1-215ENST00000552823 MIER1Q8N108 512 aa8.23□□□□□ -1.09
LIMA1-215ENST00000552823 CFTRP13569 1480 aa8.21□□□□□ -1.09
LIMA1-215ENST00000552823 KIF21BO75037 1637 aa8.21□□□□□ -1.1
LIMA1-215ENST00000552823 CC2D2AQ9P2K1 1620 aa8.2□□□□□ -1.1
LIMA1-215ENST00000552823 ARAP1Q96P48 1450 aa8.2□□□□□ -1.1
LIMA1-215ENST00000552823 SIN3AQ96ST3 1273 aa8.2□□□□□ -1.1
LIMA1-215ENST00000552823 CHIC2Q9UKJ5 165 aa8.2□□□□□ -1.1
LIMA1-215ENST00000552823 FGD5Q6ZNL6 1462 aa8.2□□□□□ -1.1
LIMA1-215ENST00000552823 FANCD2Q9BXW9 1451 aa8.19□□□□□ -1.1
LIMA1-215ENST00000552823 TOP2BQ02880 1626 aa8.19□□□□□ -1.1
LIMA1-215ENST00000552823 GTF3C3Q9Y5Q9 886 aa8.18□□□□□ -1.1
LIMA1-215ENST00000552823 CNGB1Q14028 1251 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-215ENST00000552823 FHOD3Q2V2M9 1422 aa8.18□□□□□ -1.1
LIMA1-215ENST00000552823 PRXQ9BXM0 1461 aa8.17□□□□□ -1.1
LIMA1-215ENST00000552823 CENPBP07199 599 aaPredicted RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms