RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 AEBP2Q6ZN18 517 aaPredicted RBP19.41■□□□□ 0.7
CHMP4A-210ENST00000552620 CHIC1Q5VXU3 224 aa18.73■□□□□ 0.59
CHMP4A-210ENST00000552620 SENP3Q9H4L4 574 aaPredicted RBP16.53■□□□□ 0.24
CHMP4A-210ENST00000552620 PHF23Q9BUL5 403 aaPredicted RBP16.44■□□□□ 0.22
CHMP4A-210ENST00000552620 FOXD1Q16676 465 aa15.36■□□□□ 0.05
CHMP4A-210ENST00000552620 PLPPR3Q6T4P5 718 aa15.19■□□□□ 0.02
CHMP4A-210ENST00000552620 PPP6R1Q9UPN7 881 aa14.58□□□□□ -0.08
CHMP4A-210ENST00000552620 ADRA2BP18089 450 aa14.56□□□□□ -0.08
CHMP4A-210ENST00000552620 PIAS4Q8N2W9 510 aaPredicted RBP14.43□□□□□ -0.1
CHMP4A-210ENST00000552620 MSH5O43196 834 aa14.28□□□□□ -0.12
CHMP4A-210ENST00000552620 KCNA4P22459 653 aa13.6□□□□□ -0.23
CHMP4A-210ENST00000552620 POTEDQ86YR6 584 aa13.54□□□□□ -0.24
CHMP4A-210ENST00000552620 PPP4R3CPQ6ZMV5 832 aa13.41□□□□□ -0.26
CHMP4A-210ENST00000552620 SCAF1Q9H7N4 1312 aaKnown RBP13.35□□□□□ -0.27
CHMP4A-210ENST00000552620 MAPK8IP2Q13387 824 aaPredicted RBP13.29□□□□□ -0.28
CHMP4A-210ENST00000552620 NCBP3Q53F19 620 aaKnown RBP13.27□□□□□ -0.29
CHMP4A-210ENST00000552620 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
CHMP4A-210ENST00000552620 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
CHMP4A-210ENST00000552620 SLC4A1APQ9BWU0 796 aaKnown RBP13.09□□□□□ -0.31
CHMP4A-210ENST00000552620 NPM3O75607 178 aaKnown RBP12.99□□□□□ -0.33
CHMP4A-210ENST00000552620 CNKSR2Q8WXI2 1034 aa12.97□□□□□ -0.33
CHMP4A-210ENST00000552620 CSRNP3Q8WYN3 585 aa12.82□□□□□ -0.36
CHMP4A-210ENST00000552620 HOXD11P31277 338 aaPredicted RBP12.79□□□□□ -0.36
CHMP4A-210ENST00000552620 RNF216Q9NWF9 866 aaPredicted RBP12.77□□□□□ -0.37
CHMP4A-210ENST00000552620 DCAF8L1A6NGE4 600 aa12.6□□□□□ -0.39
CHMP4A-210ENST00000552620 DNAJC5BQ9UF47 199 aa12.57□□□□□ -0.4
CHMP4A-210ENST00000552620 ZBTB22O15209 634 aa12.49□□□□□ -0.41
CHMP4A-210ENST00000552620 FOXD4L1Q9NU39 408 aa12.44□□□□□ -0.42
CHMP4A-210ENST00000552620 RNF39Q9H2S5 420 aa12.2□□□□□ -0.46
CHMP4A-210ENST00000552620 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.19□□□□□ -0.462e-7■■■■□ 23.3
CHMP4A-210ENST00000552620 NISCHQ9Y2I1 1504 aa12.16□□□□□ -0.46
CHMP4A-210ENST00000552620 SLC4A2P04920 1241 aa12.12□□□□□ -0.47
CHMP4A-210ENST00000552620 CACNB1Q02641 598 aaPredicted RBP12.08□□□□□ -0.48
CHMP4A-210ENST00000552620 MYCNP04198 464 aaPredicted RBP12.05□□□□□ -0.48
CHMP4A-210ENST00000552620 C1QBPQ07021 282 aaKnown RBP12.05□□□□□ -0.48
CHMP4A-210ENST00000552620 ATXN8OSP0DMR3 200 aa11.99□□□□□ -0.49
CHMP4A-210ENST00000552620 U3KPZ7 1027 aaPredicted RBP11.95□□□□□ -0.5
CHMP4A-210ENST00000552620 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.77□□□□□ -0.53
CHMP4A-210ENST00000552620 HNRNPUL2Q1KMD3 747 aaKnown RBP11.77□□□□□ -0.53
CHMP4A-210ENST00000552620 SAMD1Q6SPF0 538 aaPredicted RBP11.73□□□□□ -0.53
CHMP4A-210ENST00000552620 SPINK5Q9NQ38 1064 aaPredicted RBP11.69□□□□□ -0.54
CHMP4A-210ENST00000552620 APLP2Q06481 763 aa11.68□□□□□ -0.54
CHMP4A-210ENST00000552620 CAPN15O75808 1086 aa11.67□□□□□ -0.54
CHMP4A-210ENST00000552620 FKBP8Q14318 412 aa11.61□□□□□ -0.55
CHMP4A-210ENST00000552620 ATF5Q9Y2D1 282 aaPredicted RBP11.59□□□□□ -0.55
CHMP4A-210ENST00000552620 TRHP20396 242 aaPredicted RBP11.55□□□□□ -0.56
CHMP4A-210ENST00000552620 ZNF219Q9P2Y4 722 aaPredicted RBP11.54□□□□□ -0.56
CHMP4A-210ENST00000552620 DSG3P32926 999 aa11.52□□□□□ -0.57
CHMP4A-210ENST00000552620 AMER1Q5JTC6 1135 aaPredicted RBP11.45□□□□□ -0.58
CHMP4A-210ENST00000552620 ABCB7O75027 752 aa11.41□□□□□ -0.58
CHMP4A-210ENST00000552620 RTN4Q9NQC3 1192 aaKnown RBP11.35□□□□□ -0.59
CHMP4A-210ENST00000552620 POLA2Q14181 598 aa11.3□□□□□ -0.6
CHMP4A-210ENST00000552620 FBLN2P98095 1184 aa11.2□□□□□ -0.62
CHMP4A-210ENST00000552620 SPDYE4A6NLX3 237 aa11.17□□□□□ -0.62
CHMP4A-210ENST00000552620 FBXO3Q9UK99 471 aa11.14□□□□□ -0.63
CHMP4A-210ENST00000552620 MKRN4PQ13434 485 aaPredicted RBP11.13□□□□□ -0.63
CHMP4A-210ENST00000552620 ZBTB12Q9Y330 459 aaPredicted RBP11.1□□□□□ -0.63
CHMP4A-210ENST00000552620 SLC24A1O60721 1099 aa11.07□□□□□ -0.64
CHMP4A-210ENST00000552620 PROM2Q8N271 834 aa11.01□□□□□ -0.65
CHMP4A-210ENST00000552620 RBM42Q9BTD8 480 aaKnown RBP11□□□□□ -0.65
CHMP4A-210ENST00000552620 VASPP50552 380 aaPredicted RBP10.92□□□□□ -0.66
CHMP4A-210ENST00000552620 OSCARQ8IYS5 282 aa10.92□□□□□ -0.66
CHMP4A-210ENST00000552620 AKT1S1Q96B36 256 aa10.81□□□□□ -0.68
CHMP4A-210ENST00000552620 SPDYE2BA6NHP3 402 aa10.78□□□□□ -0.68
CHMP4A-210ENST00000552620 SPDYE6P0CI01 402 aa10.78□□□□□ -0.68
CHMP4A-210ENST00000552620 SPDYE2Q495Y8 402 aa10.78□□□□□ -0.68
CHMP4A-210ENST00000552620 ZNF692Q9BU19 519 aaPredicted RBP10.78□□□□□ -0.68
CHMP4A-210ENST00000552620 IFNLR1Q8IU57 520 aaPredicted RBP10.76□□□□□ -0.69
CHMP4A-210ENST00000552620 STAG3Q9UJ98 1225 aa10.71□□□□□ -0.69
CHMP4A-210ENST00000552620 REM2Q8IYK8 340 aaPredicted RBP10.7□□□□□ -0.7
CHMP4A-210ENST00000552620 SSUH2Q9Y2M2 353 aa10.69□□□□□ -0.7
CHMP4A-210ENST00000552620 KLHL34Q8N239 644 aa10.66□□□□□ -0.7
CHMP4A-210ENST00000552620 PABPN1Q86U42 306 aaKnown RBP eCLIP10.64□□□□□ -0.71
CHMP4A-210ENST00000552620 CHRDL2Q6WN34 429 aa10.63□□□□□ -0.71
CHMP4A-210ENST00000552620 DCAF8L2P0C7V8 631 aa10.62□□□□□ -0.71
CHMP4A-210ENST00000552620 SPOCK2Q92563 424 aa10.62□□□□□ -0.71
CHMP4A-210ENST00000552620 PLCD3Q8N3E9 789 aa10.61□□□□□ -0.71
CHMP4A-210ENST00000552620 POTEHQ6S545 545 aa10.59□□□□□ -0.71
CHMP4A-210ENST00000552620 PKD2Q13563 968 aa10.58□□□□□ -0.72
CHMP4A-210ENST00000552620 PITPNM1O00562 1244 aa10.57□□□□□ -0.72
CHMP4A-210ENST00000552620 MIER1Q8N108 512 aa10.56□□□□□ -0.72
CHMP4A-210ENST00000552620 PLEKHG5O94827 1062 aa10.54□□□□□ -0.72
CHMP4A-210ENST00000552620 PLCB2Q00722 1185 aa10.54□□□□□ -0.72
CHMP4A-210ENST00000552620 SPDYE1Q8NFV5 336 aaPredicted RBP10.53□□□□□ -0.72
CHMP4A-210ENST00000552620 ZBTB47Q9UFB7 747 aaPredicted RBP10.51□□□□□ -0.73
CHMP4A-210ENST00000552620 CLEC11AQ9Y240 323 aa10.5□□□□□ -0.73
CHMP4A-210ENST00000552620 ECM2O94769 699 aaPredicted RBP10.49□□□□□ -0.73
CHMP4A-210ENST00000552620 PIP4P2Q8N4L2 257 aa10.44□□□□□ -0.74
CHMP4A-210ENST00000552620 FXR2P51116 673 aaKnown RBP eCLIP10.43□□□□□ -0.742e-8■■□□□ 13.1
CHMP4A-210ENST00000552620 HAP1P54257 671 aaPredicted RBP10.4□□□□□ -0.74
CHMP4A-210ENST00000552620 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.39□□□□□ -0.75
CHMP4A-210ENST00000552620 PRR29P0C7W0 189 aa10.37□□□□□ -0.75
CHMP4A-210ENST00000552620 CIZ1Q9ULV3 898 aaPredicted RBP10.37□□□□□ -0.75
CHMP4A-210ENST00000552620 BBXQ8WY36 941 aaPredicted RBP10.35□□□□□ -0.75
CHMP4A-210ENST00000552620 CCDC180Q9P1Z9 1646 aa10.35□□□□□ -0.75
CHMP4A-210ENST00000552620 TRIM41Q8WV44 630 aa10.34□□□□□ -0.75
CHMP4A-210ENST00000552620 RGL2O15211 777 aa10.32□□□□□ -0.76
CHMP4A-210ENST00000552620 PRKAR2AP13861 404 aaKnown RBP10.31□□□□□ -0.76
CHMP4A-210ENST00000552620 ZCCHC6Q5VYS8 1495 aaKnown RBP10.29□□□□□ -0.76
CHMP4A-210ENST00000552620 GSE1Q14687 1217 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms