RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NISCHQ9Y2I1 1504 aa27.7■■■□□ 2.02
CUX1-214ENST00000550008 DCAF8L2P0C7V8 631 aa26.95■■□□□ 1.91
CUX1-214ENST00000550008 SHROOM4Q9ULL8 1493 aa25.99■■□□□ 1.75
CUX1-214ENST00000550008 SUPT5HO00267 1087 aaKnown RBP25.97■■□□□ 1.75
CUX1-214ENST00000550008 EHMT2Q96KQ7 1210 aa24.86■■□□□ 1.57
CUX1-214ENST00000550008 FAM9AQ8IZU1 332 aaPredicted RBP24.39■■□□□ 1.49
CUX1-214ENST00000550008 PCGF6Q9BYE7 350 aa24.07■■□□□ 1.44
CUX1-214ENST00000550008 TTBK1Q5TCY1 1321 aaPredicted RBP23.93■■□□□ 1.42
CUX1-214ENST00000550008 TRIM41Q8WV44 630 aa23.89■■□□□ 1.42
CUX1-214ENST00000550008 CHIC1Q5VXU3 224 aa23.69■■□□□ 1.38
CUX1-214ENST00000550008 RANGAP1P46060 587 aaPredicted RBP23.65■■□□□ 1.38
CUX1-214ENST00000550008 LOC105371045A0A1W2PR82 267 aa23.62■■□□□ 1.37
CUX1-214ENST00000550008 PPARGC1BQ86YN6 1023 aaKnown RBP23.53■■□□□ 1.36
CUX1-214ENST00000550008 ABCC9O60706 1549 aa23.46■■□□□ 1.35
CUX1-214ENST00000550008 APLP2Q06481 763 aa23.42■■□□□ 1.34
CUX1-214ENST00000550008 UBTFP17480 764 aaKnown RBP23.35■■□□□ 1.33
CUX1-214ENST00000550008 PABPN1Q86U42 306 aaKnown RBP eCLIP23.18■■□□□ 1.3
CUX1-214ENST00000550008 CCER1Q8TC90 406 aaPredicted RBP23.12■■□□□ 1.29
CUX1-214ENST00000550008 ZCCHC6Q5VYS8 1495 aaKnown RBP23.05■■□□□ 1.28
CUX1-214ENST00000550008 ATP1B4Q9UN42 357 aaPredicted RBP23.02■■□□□ 1.28
CUX1-214ENST00000550008 TRIM26Q12899 539 aaPredicted RBP23.01■■□□□ 1.27
CUX1-214ENST00000550008 HRCP23327 699 aa22.96■■□□□ 1.27
CUX1-214ENST00000550008 ZEB1P37275 1124 aaPredicted RBP22.84■■□□□ 1.25
CUX1-214ENST00000550008 SCRIBQ14160 1630 aa22.71■■□□□ 1.23
CUX1-214ENST00000550008 CCDC180Q9P1Z9 1646 aa22.65■■□□□ 1.22
CUX1-214ENST00000550008 HNRNPUL2Q1KMD3 747 aaKnown RBP22.64■■□□□ 1.21
CUX1-214ENST00000550008 ITGAEP38570 1179 aa22.61■■□□□ 1.21
CUX1-214ENST00000550008 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.6■■□□□ 1.21
CUX1-214ENST00000550008 YTHDC1Q96MU7 727 aaKnown RBP22.5■■□□□ 1.19
CUX1-214ENST00000550008 MYO15BQ96JP2 1530 aa22.38■■□□□ 1.17
CUX1-214ENST00000550008 CENPBP07199 599 aaPredicted RBP22.34■■□□□ 1.17
CUX1-214ENST00000550008 PELP1Q8IZL8 1130 aaKnown RBP22.31■■□□□ 1.16
CUX1-214ENST00000550008 CSRNP3Q8WYN3 585 aa22.23■■□□□ 1.15
CUX1-214ENST00000550008 RSF1Q96T23 1441 aaPredicted RBP22.23■■□□□ 1.15
CUX1-214ENST00000550008 P3H3Q8IVL6 736 aa22.03■■□□□ 1.12
CUX1-214ENST00000550008 FAM50AQ14320 339 aaKnown RBP22.01■■□□□ 1.11
CUX1-214ENST00000550008 CECR2Q9BXF3 1484 aa22■■□□□ 1.11
CUX1-214ENST00000550008 DIEXFQ68CQ4 756 aaKnown RBP21.99■■□□□ 1.11
CUX1-214ENST00000550008 DCAF1Q9Y4B6 1507 aa21.91■■□□□ 1.1
CUX1-214ENST00000550008 MYT1Q01538 1121 aa21.9■■□□□ 1.1
CUX1-214ENST00000550008 CNGB1Q14028 1251 aaPredicted RBP21.89■■□□□ 1.09
CUX1-214ENST00000550008 RB1CC1Q8TDY2 1594 aa21.85■■□□□ 1.09
CUX1-214ENST00000550008 ARID3CA6NKF2 412 aa21.85■■□□□ 1.09
CUX1-214ENST00000550008 NEUROD1Q13562 356 aa21.83■■□□□ 1.08
CUX1-214ENST00000550008 POLR3GLQ9BT43 218 aa21.83■■□□□ 1.08
CUX1-214ENST00000550008 NACADO15069 1562 aa21.82■■□□□ 1.08
CUX1-214ENST00000550008 FBLN2P98095 1184 aa21.75■■□□□ 1.07
CUX1-214ENST00000550008 MYT1LQ9UL68 1186 aa21.66■■□□□ 1.06
CUX1-214ENST00000550008 MROH2BQ7Z745 1585 aa21.66■■□□□ 1.06
CUX1-214ENST00000550008 TRIM52Q96A61 297 aa21.65■■□□□ 1.06
CUX1-214ENST00000550008 NEFLP07196 543 aa21.64■■□□□ 1.05
CUX1-214ENST00000550008 ZNF316A6NFI3 1004 aaPredicted RBP21.59■■□□□ 1.05
CUX1-214ENST00000550008 WRNQ14191 1432 aaPredicted RBP eCLIP21.53■■□□□ 1.046e-6■■■□□ 16.7
CUX1-214ENST00000550008 CEP162Q5TB80 1403 aa21.52■■□□□ 1.04
CUX1-214ENST00000550008 BAZ1AQ9NRL2 1556 aaPredicted RBP21.51■■□□□ 1.03
CUX1-214ENST00000550008 CLIP1P30622 1438 aa21.49■■□□□ 1.03
CUX1-214ENST00000550008 GTF3C3Q9Y5Q9 886 aa21.48■■□□□ 1.03
CUX1-214ENST00000550008 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
CUX1-214ENST00000550008 SOGA1O94964 1423 aa21.47■■□□□ 1.03
CUX1-214ENST00000550008 ZNF326Q5BKZ1 582 aaKnown RBP21.43■■□□□ 1.02
CUX1-214ENST00000550008 ABCC8Q09428 1581 aa21.39■■□□□ 1.01
CUX1-214ENST00000550008 CCDC88BA6NC98 1476 aa21.37■■□□□ 1.01
CUX1-214ENST00000550008 ZNF777Q9ULD5 760 aaPredicted RBP21.36■■□□□ 1.01
CUX1-214ENST00000550008 WIZO95785 1651 aa21.35■■□□□ 1.01
CUX1-214ENST00000550008 GOLGA3Q08378 1498 aa21.33■■□□□ 1.01
CUX1-214ENST00000550008 ERICH6Q7L0X2 663 aa21.3■■□□□ 1
CUX1-214ENST00000550008 CHIC2Q9UKJ5 165 aa21.3■■□□□ 1
CUX1-214ENST00000550008 TNIKQ9UKE5 1360 aa21.3■■□□□ 1
CUX1-214ENST00000550008 BCANQ96GW7 911 aa21.29■■□□□ 1
CUX1-214ENST00000550008 EEA1Q15075 1411 aa21.27■■□□□ 1
CUX1-214ENST00000550008 ACIN1Q9UKV3 1341 aaKnown RBP21.27■■□□□ 1
CUX1-214ENST00000550008 HIRIP3Q9BW71 556 aaPredicted RBP21.21■□□□□ 0.99
CUX1-214ENST00000550008 ANP32CO43423 234 aa21.18■□□□□ 0.98
CUX1-214ENST00000550008 CEP164Q9UPV0 1460 aa21.16■□□□□ 0.98
CUX1-214ENST00000550008 DDX10Q13206 875 aaKnown RBP21.15■□□□□ 0.98
CUX1-214ENST00000550008 KIF27Q86VH2 1401 aa21.13■□□□□ 0.97
CUX1-214ENST00000550008 MIER1Q8N108 512 aa21.13■□□□□ 0.97
CUX1-214ENST00000550008 SLC4A1APQ9BWU0 796 aaKnown RBP21.11■□□□□ 0.97
CUX1-214ENST00000550008 MTUS2Q5JR59 1369 aa21.1■□□□□ 0.97
CUX1-214ENST00000550008 CDK11AQ9UQ88 783 aaPredicted RBP21.06■□□□□ 0.96
CUX1-214ENST00000550008 TONSLQ96HA7 1378 aa21.05■□□□□ 0.96
CUX1-214ENST00000550008 RRP7BPQ9NSQ0 103 aa21.05■□□□□ 0.96
CUX1-214ENST00000550008 RUSC2Q8N2Y8 1516 aa21.05■□□□□ 0.96
CUX1-214ENST00000550008 KANK4Q5T7N3 995 aaPredicted RBP21.01■□□□□ 0.95
CUX1-214ENST00000550008 TOP2AP11388 1531 aaKnown RBP21.01■□□□□ 0.95
CUX1-214ENST00000550008 CHMP7Q8WUX9 453 aaPredicted RBP21■□□□□ 0.95
CUX1-214ENST00000550008 SCAF1Q9H7N4 1312 aaKnown RBP21■□□□□ 0.95
CUX1-214ENST00000550008 CUX2O14529 1486 aa20.98■□□□□ 0.95
CUX1-214ENST00000550008 SIN3AQ96ST3 1273 aa20.93■□□□□ 0.94
CUX1-214ENST00000550008 CARMIL1Q5VZK9 1371 aa20.93■□□□□ 0.94
CUX1-214ENST00000550008 SMARCA4P51532 1647 aa20.92■□□□□ 0.94
CUX1-214ENST00000550008 ATAD2BQ9ULI0 1458 aa20.91■□□□□ 0.94
CUX1-214ENST00000550008 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.87■□□□□ 0.931e-6■■□□□ 14.2
CUX1-214ENST00000550008 SMARCA2P51531 1590 aa20.86■□□□□ 0.93
CUX1-214ENST00000550008 VPS8Q8N3P4 1428 aa20.85■□□□□ 0.93
CUX1-214ENST00000550008 RAPGEF2Q9Y4G8 1499 aa20.82■□□□□ 0.92
CUX1-214ENST00000550008 KDM2AQ9Y2K7 1162 aa20.81■□□□□ 0.92
CUX1-214ENST00000550008 TDRD9Q8NDG6 1382 aaKnown RBP20.81■□□□□ 0.92
CUX1-214ENST00000550008 HNRNPUQ00839 825 aaKnown RBP eCLIP20.79■□□□□ 0.92
CUX1-214ENST00000550008 FAM9BQ8IZU0 186 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms