RNA–Protein interactions for RNA: ENST00000545266.1

COPA-206, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-206ENST00000545266 AEBP2Q6ZN18 517 aaPredicted RBP28.11■■■□□ 2.09
COPA-206ENST00000545266 CHIC1Q5VXU3 224 aa27.74■■■□□ 2.03
COPA-206ENST00000545266 PHF23Q9BUL5 403 aaPredicted RBP24.44■■□□□ 1.5
COPA-206ENST00000545266 SENP3Q9H4L4 574 aaPredicted RBP23.79■■□□□ 1.4
COPA-206ENST00000545266 PLPPR3Q6T4P5 718 aa22.62■■□□□ 1.21
COPA-206ENST00000545266 FOXD1Q16676 465 aa22.04■■□□□ 1.12
COPA-206ENST00000545266 PPP6R1Q9UPN7 881 aa21.44■■□□□ 1.02
COPA-206ENST00000545266 ADRA2BP18089 450 aa21.39■■□□□ 1.01
COPA-206ENST00000545266 PIAS4Q8N2W9 510 aaPredicted RBP20.78■□□□□ 0.92
COPA-206ENST00000545266 MSH5O43196 834 aa20.21■□□□□ 0.83
COPA-206ENST00000545266 PPP4R3CPQ6ZMV5 832 aa19.95■□□□□ 0.78
COPA-206ENST00000545266 KCNA4P22459 653 aa19.79■□□□□ 0.76
COPA-206ENST00000545266 SCAF1Q9H7N4 1312 aaKnown RBP19.58■□□□□ 0.73
COPA-206ENST00000545266 NCBP3Q53F19 620 aaKnown RBP19.5■□□□□ 0.71
COPA-206ENST00000545266 CNKSR2Q8WXI2 1034 aa19.36■□□□□ 0.69
COPA-206ENST00000545266 MAPK8IP2Q13387 824 aaPredicted RBP19.32■□□□□ 0.68
COPA-206ENST00000545266 NPM3O75607 178 aaKnown RBP19.23■□□□□ 0.67
COPA-206ENST00000545266 DMRT2Q9Y5R5 561 aa19.07■□□□□ 0.64
COPA-206ENST00000545266 RNF216Q9NWF9 866 aaPredicted RBP18.94■□□□□ 0.62
COPA-206ENST00000545266 SLC4A1APQ9BWU0 796 aaKnown RBP18.88■□□□□ 0.61
COPA-206ENST00000545266 DNAJC5BQ9UF47 199 aa18.86■□□□□ 0.61
COPA-206ENST00000545266 HOXD11P31277 338 aaPredicted RBP18.82■□□□□ 0.6
COPA-206ENST00000545266 EHMT2Q96KQ7 1210 aa18.56■□□□□ 0.56
COPA-206ENST00000545266 CSRNP3Q8WYN3 585 aa18.38■□□□□ 0.53
COPA-206ENST00000545266 ZBTB22O15209 634 aa18.26■□□□□ 0.51
COPA-206ENST00000545266 FOXD4L1Q9NU39 408 aa18.15■□□□□ 0.5
COPA-206ENST00000545266 SLC4A2P04920 1241 aa18.13■□□□□ 0.49
COPA-206ENST00000545266 DCAF8L1A6NGE4 600 aa18■□□□□ 0.47
COPA-206ENST00000545266 POTEDQ86YR6 584 aa17.89■□□□□ 0.45
COPA-206ENST00000545266 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.78■□□□□ 0.443e-10■□□□□ 9.1
COPA-206ENST00000545266 MYCNP04198 464 aaPredicted RBP17.76■□□□□ 0.43
COPA-206ENST00000545266 U3KPZ7 1027 aaPredicted RBP17.62■□□□□ 0.41
COPA-206ENST00000545266 ATXN8OSP0DMR3 200 aa17.58■□□□□ 0.4
COPA-206ENST00000545266 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.48■□□□□ 0.39
COPA-206ENST00000545266 HNRNPUL2Q1KMD3 747 aaKnown RBP17.48■□□□□ 0.39
COPA-206ENST00000545266 SAMD1Q6SPF0 538 aaPredicted RBP17.43■□□□□ 0.38
COPA-206ENST00000545266 RNF39Q9H2S5 420 aa17.39■□□□□ 0.37
COPA-206ENST00000545266 ATF5Q9Y2D1 282 aaPredicted RBP17.25■□□□□ 0.35
COPA-206ENST00000545266 APLP2Q06481 763 aa17.21■□□□□ 0.35
COPA-206ENST00000545266 C1QBPQ07021 282 aaKnown RBP17.19■□□□□ 0.34
COPA-206ENST00000545266 SPINK5Q9NQ38 1064 aaPredicted RBP16.99■□□□□ 0.31
COPA-206ENST00000545266 ZNF219Q9P2Y4 722 aaPredicted RBP16.97■□□□□ 0.31
COPA-206ENST00000545266 CAPN15O75808 1086 aa16.84■□□□□ 0.29
COPA-206ENST00000545266 TRHP20396 242 aaPredicted RBP16.82■□□□□ 0.28
COPA-206ENST00000545266 POLA2Q14181 598 aa16.68■□□□□ 0.26
COPA-206ENST00000545266 DSG3P32926 999 aa16.62■□□□□ 0.25
COPA-206ENST00000545266 CACNB1Q02641 598 aaPredicted RBP16.6■□□□□ 0.25
COPA-206ENST00000545266 MKRN4PQ13434 485 aaPredicted RBP16.56■□□□□ 0.24
COPA-206ENST00000545266 ABCB7O75027 752 aa16.53■□□□□ 0.24
COPA-206ENST00000545266 FKBP8Q14318 412 aa16.5■□□□□ 0.23
COPA-206ENST00000545266 FBLN2P98095 1184 aa16.47■□□□□ 0.23
COPA-206ENST00000545266 ZBTB12Q9Y330 459 aaPredicted RBP16.47■□□□□ 0.23
COPA-206ENST00000545266 SPDYE4A6NLX3 237 aa16.26■□□□□ 0.19
COPA-206ENST00000545266 PROM2Q8N271 834 aa16.19■□□□□ 0.18
COPA-206ENST00000545266 OSCARQ8IYS5 282 aa16.09■□□□□ 0.17
COPA-206ENST00000545266 SPDYE2BA6NHP3 402 aa16.07■□□□□ 0.16
COPA-206ENST00000545266 SPDYE6P0CI01 402 aa16.07■□□□□ 0.16
COPA-206ENST00000545266 SPDYE2Q495Y8 402 aa16.07■□□□□ 0.16
COPA-206ENST00000545266 SSUH2Q9Y2M2 353 aa16.01■□□□□ 0.15
COPA-206ENST00000545266 ZNF692Q9BU19 519 aaPredicted RBP15.97■□□□□ 0.15
COPA-206ENST00000545266 FBXO3Q9UK99 471 aa15.89■□□□□ 0.13
COPA-206ENST00000545266 RBM42Q9BTD8 480 aaKnown RBP15.8■□□□□ 0.12
COPA-206ENST00000545266 PABPN1Q86U42 306 aaKnown RBP eCLIP15.78■□□□□ 0.12
COPA-206ENST00000545266 AKT1S1Q96B36 256 aa15.7■□□□□ 0.1
COPA-206ENST00000545266 VASPP50552 380 aaPredicted RBP15.67■□□□□ 0.1
COPA-206ENST00000545266 STAG3Q9UJ98 1225 aa15.65■□□□□ 0.1
COPA-206ENST00000545266 AMER1Q5JTC6 1135 aaPredicted RBP15.58■□□□□ 0.08
COPA-206ENST00000545266 REM2Q8IYK8 340 aaPredicted RBP15.52■□□□□ 0.08
COPA-206ENST00000545266 RTN4Q9NQC3 1192 aaKnown RBP15.52■□□□□ 0.08
COPA-206ENST00000545266 IFNLR1Q8IU57 520 aaPredicted RBP15.5■□□□□ 0.07
COPA-206ENST00000545266 SPDYE1Q8NFV5 336 aaPredicted RBP15.49■□□□□ 0.07
COPA-206ENST00000545266 MIER1Q8N108 512 aa15.34■□□□□ 0.05
COPA-206ENST00000545266 PITPNM1O00562 1244 aa15.32■□□□□ 0.04
COPA-206ENST00000545266 PLCD3Q8N3E9 789 aa15.32■□□□□ 0.04
COPA-206ENST00000545266 CLEC11AQ9Y240 323 aa15.29■□□□□ 0.04
COPA-206ENST00000545266 PRR29P0C7W0 189 aa15.27■□□□□ 0.04
COPA-206ENST00000545266 SPOCK2Q92563 424 aa15.24■□□□□ 0.03
COPA-206ENST00000545266 KLHL34Q8N239 644 aa15.23■□□□□ 0.03
COPA-206ENST00000545266 PLEKHG5O94827 1062 aa15.22■□□□□ 0.03
COPA-206ENST00000545266 ZBTB47Q9UFB7 747 aaPredicted RBP15.22■□□□□ 0.03
COPA-206ENST00000545266 CREBZFQ9NS37 354 aa15.21■□□□□ 0.03
COPA-206ENST00000545266 MNX1P50219 401 aaPredicted RBP15.14■□□□□ 0.01
COPA-206ENST00000545266 PKD2Q13563 968 aa15.11■□□□□ 0.01
COPA-206ENST00000545266 FXR2P51116 673 aaKnown RBP eCLIP15.04■□□□□ -02e-16■■■■□ 24.9
COPA-206ENST00000545266 NUBP1P53384 320 aa15.03■□□□□ -0
COPA-206ENST00000545266 CHRDL2Q6WN34 429 aa15.02■□□□□ -0
COPA-206ENST00000545266 CHADLQ6NUI6 762 aa14.93□□□□□ -0.02
COPA-206ENST00000545266 NPM1P06748 294 aaKnown RBP eCLIP14.91□□□□□ -0.02
COPA-206ENST00000545266 PIP4P2Q8N4L2 257 aa14.91□□□□□ -0.02
COPA-206ENST00000545266 PRKAR2AP13861 404 aaKnown RBP14.9□□□□□ -0.02
COPA-206ENST00000545266 FARP1Q9Y4F1 1045 aaPredicted RBP14.9□□□□□ -0.02
COPA-206ENST00000545266 GSE1Q14687 1217 aa14.89□□□□□ -0.03
COPA-206ENST00000545266 TRIM41Q8WV44 630 aa14.88□□□□□ -0.03
COPA-206ENST00000545266 ECM2O94769 699 aaPredicted RBP14.86□□□□□ -0.03
COPA-206ENST00000545266 RASEFQ8IZ41 740 aa14.86□□□□□ -0.03
COPA-206ENST00000545266 CIZ1Q9ULV3 898 aaPredicted RBP14.86□□□□□ -0.03
COPA-206ENST00000545266 FAM212AQ96EL1 285 aa14.82□□□□□ -0.04
COPA-206ENST00000545266 DCAF8Q5TAQ9 597 aa14.79□□□□□ -0.04
COPA-206ENST00000545266 CHRM1P11229 460 aaPredicted RBP14.77□□□□□ -0.05
COPA-206ENST00000545266 RGL2O15211 777 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms