RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, humanhuman

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-205ENST00000544506 AEBP2Q6ZN18 517 aaPredicted RBP27.23■■□□□ 1.95
LEMD3-205ENST00000544506 CHIC1Q5VXU3 224 aa26.74■■□□□ 1.87
LEMD3-205ENST00000544506 PHF23Q9BUL5 403 aaPredicted RBP23.55■■□□□ 1.36
LEMD3-205ENST00000544506 SENP3Q9H4L4 574 aaPredicted RBP23.04■■□□□ 1.28
LEMD3-205ENST00000544506 PLPPR3Q6T4P5 718 aa21.78■■□□□ 1.08
LEMD3-205ENST00000544506 FOXD1Q16676 465 aa21.38■■□□□ 1.01
LEMD3-205ENST00000544506 PPP6R1Q9UPN7 881 aa20.71■□□□□ 0.91
LEMD3-205ENST00000544506 ADRA2BP18089 450 aa20.7■□□□□ 0.9
LEMD3-205ENST00000544506 PIAS4Q8N2W9 510 aaPredicted RBP20.21■□□□□ 0.83
LEMD3-205ENST00000544506 MSH5O43196 834 aa19.63■□□□□ 0.73
LEMD3-205ENST00000544506 PPP4R3CPQ6ZMV5 832 aa19.22■□□□□ 0.67
LEMD3-205ENST00000544506 KCNA4P22459 653 aa18.99■□□□□ 0.63
LEMD3-205ENST00000544506 SCAF1Q9H7N4 1312 aaKnown RBP18.9■□□□□ 0.62
LEMD3-205ENST00000544506 MAPK8IP2Q13387 824 aaPredicted RBP18.74■□□□□ 0.59
LEMD3-205ENST00000544506 NCBP3Q53F19 620 aaKnown RBP18.74■□□□□ 0.59
LEMD3-205ENST00000544506 CNKSR2Q8WXI2 1034 aa18.63■□□□□ 0.57
LEMD3-205ENST00000544506 NPM3O75607 178 aaKnown RBP18.5■□□□□ 0.55
LEMD3-205ENST00000544506 DMRT2Q9Y5R5 561 aa18.43■□□□□ 0.54
LEMD3-205ENST00000544506 RNF216Q9NWF9 866 aaPredicted RBP18.23■□□□□ 0.51
LEMD3-205ENST00000544506 HOXD11P31277 338 aaPredicted RBP18.12■□□□□ 0.49
LEMD3-205ENST00000544506 SLC4A1APQ9BWU0 796 aaKnown RBP18.1■□□□□ 0.49
LEMD3-205ENST00000544506 DNAJC5BQ9UF47 199 aa17.91■□□□□ 0.46
LEMD3-205ENST00000544506 EHMT2Q96KQ7 1210 aa17.81■□□□□ 0.44
LEMD3-205ENST00000544506 DCAF8L1A6NGE4 600 aa17.62■□□□□ 0.41
LEMD3-205ENST00000544506 POTEDQ86YR6 584 aa17.59■□□□□ 0.41
LEMD3-205ENST00000544506 CSRNP3Q8WYN3 585 aa17.51■□□□□ 0.39
LEMD3-205ENST00000544506 ZBTB22O15209 634 aa17.49■□□□□ 0.39
LEMD3-205ENST00000544506 SLC4A2P04920 1241 aa17.43■□□□□ 0.38
LEMD3-205ENST00000544506 FOXD4L1Q9NU39 408 aa17.42■□□□□ 0.38
LEMD3-205ENST00000544506 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.25■□□□□ 0.35
LEMD3-205ENST00000544506 MYCNP04198 464 aaPredicted RBP17.09■□□□□ 0.33
LEMD3-205ENST00000544506 U3KPZ7 1027 aaPredicted RBP17.03■□□□□ 0.32
LEMD3-205ENST00000544506 RNF39Q9H2S5 420 aa16.85■□□□□ 0.29
LEMD3-205ENST00000544506 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.82■□□□□ 0.28
LEMD3-205ENST00000544506 HNRNPUL2Q1KMD3 747 aaKnown RBP16.82■□□□□ 0.28
LEMD3-205ENST00000544506 SAMD1Q6SPF0 538 aaPredicted RBP16.78■□□□□ 0.28
LEMD3-205ENST00000544506 ATXN8OSP0DMR3 200 aa16.76■□□□□ 0.27
LEMD3-205ENST00000544506 C1QBPQ07021 282 aaKnown RBP16.64■□□□□ 0.25
LEMD3-205ENST00000544506 ATF5Q9Y2D1 282 aaPredicted RBP16.64■□□□□ 0.25
LEMD3-205ENST00000544506 APLP2Q06481 763 aa16.6■□□□□ 0.25
LEMD3-205ENST00000544506 SPINK5Q9NQ38 1064 aaPredicted RBP16.5■□□□□ 0.23
LEMD3-205ENST00000544506 CAPN15O75808 1086 aa16.41■□□□□ 0.22
LEMD3-205ENST00000544506 TRHP20396 242 aaPredicted RBP16.38■□□□□ 0.21
LEMD3-205ENST00000544506 ZNF219Q9P2Y4 722 aaPredicted RBP16.37■□□□□ 0.21
LEMD3-205ENST00000544506 CACNB1Q02641 598 aaPredicted RBP16.28■□□□□ 0.2
LEMD3-205ENST00000544506 POLA2Q14181 598 aa16.14■□□□□ 0.17
LEMD3-205ENST00000544506 ABCB7O75027 752 aa16.13■□□□□ 0.17
LEMD3-205ENST00000544506 DSG3P32926 999 aa16.1■□□□□ 0.17
LEMD3-205ENST00000544506 MKRN4PQ13434 485 aaPredicted RBP15.92■□□□□ 0.14
LEMD3-205ENST00000544506 FBLN2P98095 1184 aa15.88■□□□□ 0.13
LEMD3-205ENST00000544506 ZBTB12Q9Y330 459 aaPredicted RBP15.87■□□□□ 0.13
LEMD3-205ENST00000544506 FKBP8Q14318 412 aa15.82■□□□□ 0.12
LEMD3-205ENST00000544506 SPDYE4A6NLX3 237 aa15.63■□□□□ 0.09
LEMD3-205ENST00000544506 OSCARQ8IYS5 282 aa15.62■□□□□ 0.09
LEMD3-205ENST00000544506 SPDYE2BA6NHP3 402 aa15.47■□□□□ 0.07
LEMD3-205ENST00000544506 SPDYE6P0CI01 402 aa15.47■□□□□ 0.07
LEMD3-205ENST00000544506 SPDYE2Q495Y8 402 aa15.47■□□□□ 0.07
LEMD3-205ENST00000544506 ZNF692Q9BU19 519 aaPredicted RBP15.43■□□□□ 0.06
LEMD3-205ENST00000544506 PROM2Q8N271 834 aa15.4■□□□□ 0.06
LEMD3-205ENST00000544506 SSUH2Q9Y2M2 353 aa15.39■□□□□ 0.05
LEMD3-205ENST00000544506 RBM42Q9BTD8 480 aaKnown RBP15.31■□□□□ 0.04
LEMD3-205ENST00000544506 PABPN1Q86U42 306 aaKnown RBP eCLIP15.25■□□□□ 0.03
LEMD3-205ENST00000544506 FBXO3Q9UK99 471 aa15.17■□□□□ 0.02
LEMD3-205ENST00000544506 AKT1S1Q96B36 256 aa15.16■□□□□ 0.02
LEMD3-205ENST00000544506 REM2Q8IYK8 340 aaPredicted RBP15.03■□□□□ -0
LEMD3-205ENST00000544506 VASPP50552 380 aaPredicted RBP15□□□□□ -0.01
LEMD3-205ENST00000544506 STAG3Q9UJ98 1225 aa15□□□□□ -0.01
LEMD3-205ENST00000544506 SPDYE1Q8NFV5 336 aaPredicted RBP14.97□□□□□ -0.01
LEMD3-205ENST00000544506 CLEC11AQ9Y240 323 aa14.91□□□□□ -0.02
LEMD3-205ENST00000544506 PITPNM1O00562 1244 aa14.88□□□□□ -0.03
LEMD3-205ENST00000544506 IFNLR1Q8IU57 520 aaPredicted RBP14.81□□□□□ -0.04
LEMD3-205ENST00000544506 PLCD3Q8N3E9 789 aa14.79□□□□□ -0.04
LEMD3-205ENST00000544506 PRR29P0C7W0 189 aa14.78□□□□□ -0.04
LEMD3-205ENST00000544506 MIER1Q8N108 512 aa14.78□□□□□ -0.04
LEMD3-205ENST00000544506 AMER1Q5JTC6 1135 aaPredicted RBP14.71□□□□□ -0.05
LEMD3-205ENST00000544506 RTN4Q9NQC3 1192 aaKnown RBP14.69□□□□□ -0.06
LEMD3-205ENST00000544506 PLEKHG5O94827 1062 aa14.68□□□□□ -0.06
LEMD3-205ENST00000544506 KLHL34Q8N239 644 aa14.68□□□□□ -0.06
LEMD3-205ENST00000544506 CREBZFQ9NS37 354 aa14.66□□□□□ -0.06
LEMD3-205ENST00000544506 CHRDL2Q6WN34 429 aa14.62□□□□□ -0.07
LEMD3-205ENST00000544506 ZBTB47Q9UFB7 747 aaPredicted RBP14.6□□□□□ -0.07
LEMD3-205ENST00000544506 SPOCK2Q92563 424 aa14.59□□□□□ -0.07
LEMD3-205ENST00000544506 CHADLQ6NUI6 762 aa14.55□□□□□ -0.08
LEMD3-205ENST00000544506 FXR2P51116 673 aaKnown RBP eCLIP14.54□□□□□ -0.08
LEMD3-205ENST00000544506 MNX1P50219 401 aaPredicted RBP14.53□□□□□ -0.08
LEMD3-205ENST00000544506 PRKAR2AP13861 404 aaKnown RBP14.49□□□□□ -0.09
LEMD3-205ENST00000544506 PIP4P2Q8N4L2 257 aa14.49□□□□□ -0.09
LEMD3-205ENST00000544506 NUBP1P53384 320 aa14.42□□□□□ -0.1
LEMD3-205ENST00000544506 FARP1Q9Y4F1 1045 aaPredicted RBP14.4□□□□□ -0.1
LEMD3-205ENST00000544506 NPM1P06748 294 aaKnown RBP eCLIP14.39□□□□□ -0.11
LEMD3-205ENST00000544506 PKD2Q13563 968 aa14.38□□□□□ -0.11
LEMD3-205ENST00000544506 CIZ1Q9ULV3 898 aaPredicted RBP14.34□□□□□ -0.11
LEMD3-205ENST00000544506 RASEFQ8IZ41 740 aa14.32□□□□□ -0.12
LEMD3-205ENST00000544506 GSE1Q14687 1217 aa14.28□□□□□ -0.12
LEMD3-205ENST00000544506 FAM212AQ96EL1 285 aa14.28□□□□□ -0.12
LEMD3-205ENST00000544506 DCAF8Q5TAQ9 597 aa14.27□□□□□ -0.13
LEMD3-205ENST00000544506 ECM2O94769 699 aaPredicted RBP14.26□□□□□ -0.13
LEMD3-205ENST00000544506 TSPYL2Q9H2G4 693 aaPredicted RBP14.19□□□□□ -0.14
LEMD3-205ENST00000544506 TRIM41Q8WV44 630 aa14.18□□□□□ -0.14
LEMD3-205ENST00000544506 RGL2O15211 777 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms