RNA–Protein interactions for RNA: ENST00000544278.2

SNRNP70-203, Transcript of small nuclear ribonucleoprotein U1 subunit 70, humanhuman

TSL 1 (best)

Gene SNRNP70, Length 3,221 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP70-203ENST00000544278 NISCHQ9Y2I1 1504 aa32.64■■■□□ 2.82
SNRNP70-203ENST00000544278 SHROOM4Q9ULL8 1493 aa28.69■■■□□ 2.18
SNRNP70-203ENST00000544278 DCAF8L2P0C7V8 631 aa28.26■■■□□ 2.12
SNRNP70-203ENST00000544278 SUPT5HO00267 1087 aaKnown RBP28.03■■■□□ 2.08
SNRNP70-203ENST00000544278 ZCCHC6Q5VYS8 1495 aaKnown RBP27.48■■□□□ 1.99
SNRNP70-203ENST00000544278 CCDC180Q9P1Z9 1646 aa27.37■■□□□ 1.97
SNRNP70-203ENST00000544278 CHIC1Q5VXU3 224 aa26.75■■□□□ 1.87
SNRNP70-203ENST00000544278 MYO15BQ96JP2 1530 aa26.62■■□□□ 1.85
SNRNP70-203ENST00000544278 ABCC9O60706 1549 aa26.49■■□□□ 1.83
SNRNP70-203ENST00000544278 SCRIBQ14160 1630 aa26.37■■□□□ 1.81
SNRNP70-203ENST00000544278 LOC105371045A0A1W2PR82 267 aa26.35■■□□□ 1.81
SNRNP70-203ENST00000544278 DCAF1Q9Y4B6 1507 aa26.3■■□□□ 1.8
SNRNP70-203ENST00000544278 EHMT2Q96KQ7 1210 aa26.26■■□□□ 1.79
SNRNP70-203ENST00000544278 FAM9AQ8IZU1 332 aaPredicted RBP26.09■■□□□ 1.77
SNRNP70-203ENST00000544278 PCGF6Q9BYE7 350 aa26.08■■□□□ 1.77
SNRNP70-203ENST00000544278 RSF1Q96T23 1441 aaPredicted RBP25.95■■□□□ 1.74
SNRNP70-203ENST00000544278 CECR2Q9BXF3 1484 aa25.86■■□□□ 1.73
SNRNP70-203ENST00000544278 TRIM41Q8WV44 630 aa25.8■■□□□ 1.72
SNRNP70-203ENST00000544278 RB1CC1Q8TDY2 1594 aa25.72■■□□□ 1.71
SNRNP70-203ENST00000544278 PPARGC1BQ86YN6 1023 aaKnown RBP25.63■■□□□ 1.69
SNRNP70-203ENST00000544278 PABPN1Q86U42 306 aaKnown RBP eCLIP25.59■■□□□ 1.692e-12■■■■□ 21.8
SNRNP70-203ENST00000544278 MROH2BQ7Z745 1585 aa25.59■■□□□ 1.69
SNRNP70-203ENST00000544278 HRCP23327 699 aa25.54■■□□□ 1.68
SNRNP70-203ENST00000544278 NACADO15069 1562 aa25.53■■□□□ 1.68
SNRNP70-203ENST00000544278 WIZO95785 1651 aa25.44■■□□□ 1.66
SNRNP70-203ENST00000544278 TTBK1Q5TCY1 1321 aaPredicted RBP25.26■■□□□ 1.63
SNRNP70-203ENST00000544278 TRIM26Q12899 539 aaPredicted RBP25.17■■□□□ 1.62
SNRNP70-203ENST00000544278 ABCC8Q09428 1581 aa25.01■■□□□ 1.59
SNRNP70-203ENST00000544278 BAZ1AQ9NRL2 1556 aaPredicted RBP25■■□□□ 1.59
SNRNP70-203ENST00000544278 UNC13AQ9UPW8 1703 aa24.93■■□□□ 1.58
SNRNP70-203ENST00000544278 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
SNRNP70-203ENST00000544278 SMARCA4P51532 1647 aa24.86■■□□□ 1.57
SNRNP70-203ENST00000544278 RANGAP1P46060 587 aaPredicted RBP24.84■■□□□ 1.57
SNRNP70-203ENST00000544278 SOGA1O94964 1423 aa24.77■■□□□ 1.56
SNRNP70-203ENST00000544278 UBTFP17480 764 aaKnown RBP24.75■■□□□ 1.55
SNRNP70-203ENST00000544278 TOP2AP11388 1531 aaKnown RBP24.74■■□□□ 1.55
SNRNP70-203ENST00000544278 RUSC2Q8N2Y8 1516 aa24.72■■□□□ 1.55
SNRNP70-203ENST00000544278 SMARCA2P51531 1590 aa24.72■■□□□ 1.55
SNRNP70-203ENST00000544278 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
SNRNP70-203ENST00000544278 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.68■■□□□ 1.54
SNRNP70-203ENST00000544278 EIF4G1Q04637 1599 aaKnown RBP24.62■■□□□ 1.53
SNRNP70-203ENST00000544278 CSRNP3Q8WYN3 585 aa24.54■■□□□ 1.52
SNRNP70-203ENST00000544278 CCER1Q8TC90 406 aaPredicted RBP24.44■■□□□ 1.5
SNRNP70-203ENST00000544278 CEP162Q5TB80 1403 aa24.41■■□□□ 1.5
SNRNP70-203ENST00000544278 WRNQ14191 1432 aaPredicted RBP eCLIP24.41■■□□□ 1.59e-10■■□□□ 11.7
SNRNP70-203ENST00000544278 ATAD2BQ9ULI0 1458 aa24.39■■□□□ 1.5
SNRNP70-203ENST00000544278 BAZ1BQ9UIG0 1483 aaKnown RBP24.38■■□□□ 1.49
SNRNP70-203ENST00000544278 ZEB1P37275 1124 aaPredicted RBP24.26■■□□□ 1.47
SNRNP70-203ENST00000544278 SYNJ1O43426 1573 aa24.26■■□□□ 1.47
SNRNP70-203ENST00000544278 HNRNPUL2Q1KMD3 747 aaKnown RBP24.24■■□□□ 1.47
SNRNP70-203ENST00000544278 TNIKQ9UKE5 1360 aa24.2■■□□□ 1.46
SNRNP70-203ENST00000544278 PELP1Q8IZL8 1130 aaKnown RBP24.18■■□□□ 1.46
SNRNP70-203ENST00000544278 GOLGA3Q08378 1498 aa24.1■■□□□ 1.45
SNRNP70-203ENST00000544278 RAPGEF2Q9Y4G8 1499 aa24.07■■□□□ 1.44
SNRNP70-203ENST00000544278 PEG3Q9GZU2 1588 aa24.07■■□□□ 1.44
SNRNP70-203ENST00000544278 CLIP1P30622 1438 aa24.01■■□□□ 1.43
SNRNP70-203ENST00000544278 EEA1Q15075 1411 aa24■■□□□ 1.43
SNRNP70-203ENST00000544278 APLP2Q06481 763 aa23.99■■□□□ 1.43
SNRNP70-203ENST00000544278 CEP164Q9UPV0 1460 aa23.94■■□□□ 1.42
SNRNP70-203ENST00000544278 SCAF1Q9H7N4 1312 aaKnown RBP23.93■■□□□ 1.42
SNRNP70-203ENST00000544278 ITGAEP38570 1179 aa23.84■■□□□ 1.41
SNRNP70-203ENST00000544278 KANK4Q5T7N3 995 aaPredicted RBP23.8■■□□□ 1.4
SNRNP70-203ENST00000544278 P3H3Q8IVL6 736 aa23.78■■□□□ 1.4
SNRNP70-203ENST00000544278 NCAPD3P42695 1498 aa23.78■■□□□ 1.4
SNRNP70-203ENST00000544278 CUX1P39880 1505 aa23.77■■□□□ 1.4
SNRNP70-203ENST00000544278 ATP1B4Q9UN42 357 aaPredicted RBP23.75■■□□□ 1.39
SNRNP70-203ENST00000544278 DIEXFQ68CQ4 756 aaKnown RBP23.74■■□□□ 1.39
SNRNP70-203ENST00000544278 TOP2BQ02880 1626 aa23.73■■□□□ 1.39
SNRNP70-203ENST00000544278 VPS8Q8N3P4 1428 aa23.72■■□□□ 1.39
SNRNP70-203ENST00000544278 DNAJC5BQ9UF47 199 aa23.71■■□□□ 1.39
SNRNP70-203ENST00000544278 KIF21BO75037 1637 aa23.7■■□□□ 1.38
SNRNP70-203ENST00000544278 YTHDC1Q96MU7 727 aaKnown RBP23.63■■□□□ 1.37
SNRNP70-203ENST00000544278 CFTRP13569 1480 aa23.61■■□□□ 1.37
SNRNP70-203ENST00000544278 KIF27Q86VH2 1401 aa23.6■■□□□ 1.37
SNRNP70-203ENST00000544278 CUX2O14529 1486 aa23.6■■□□□ 1.37
SNRNP70-203ENST00000544278 HMGXB3Q12766 1538 aa23.59■■□□□ 1.37
SNRNP70-203ENST00000544278 ARAP1Q96P48 1450 aa23.57■■□□□ 1.36
SNRNP70-203ENST00000544278 PRXQ9BXM0 1461 aa23.56■■□□□ 1.36
SNRNP70-203ENST00000544278 NESP48681 1621 aa23.53■■□□□ 1.36
SNRNP70-203ENST00000544278 BIVM-ERCC5R4GMW8 1640 aa23.53■■□□□ 1.36
SNRNP70-203ENST00000544278 CADPSQ9ULU8 1353 aa23.52■■□□□ 1.36
SNRNP70-203ENST00000544278 NEUROD1Q13562 356 aa23.52■■□□□ 1.36
SNRNP70-203ENST00000544278 ZNF316A6NFI3 1004 aaPredicted RBP23.48■■□□□ 1.35
SNRNP70-203ENST00000544278 CC2D2AQ9P2K1 1620 aa23.48■■□□□ 1.35
SNRNP70-203ENST00000544278 IGF1RP08069 1367 aa23.47■■□□□ 1.35
SNRNP70-203ENST00000544278 FGD5Q6ZNL6 1462 aa23.44■■□□□ 1.34
SNRNP70-203ENST00000544278 RAD54L2Q9Y4B4 1467 aa23.44■■□□□ 1.34
SNRNP70-203ENST00000544278 CARMIL1Q5VZK9 1371 aa23.4■■□□□ 1.34
SNRNP70-203ENST00000544278 ARHGAP35Q9NRY4 1499 aa23.39■■□□□ 1.33
SNRNP70-203ENST00000544278 MIER1Q8N108 512 aa23.37■■□□□ 1.33
SNRNP70-203ENST00000544278 FAM50AQ14320 339 aaKnown RBP23.36■■□□□ 1.33
SNRNP70-203ENST00000544278 FANCD2Q9BXW9 1451 aa23.34■■□□□ 1.33
SNRNP70-203ENST00000544278 ERICH3Q5RHP9 1530 aa23.33■■□□□ 1.32
SNRNP70-203ENST00000544278 ACIN1Q9UKV3 1341 aaKnown RBP23.3■■□□□ 1.32
SNRNP70-203ENST00000544278 ARID3CA6NKF2 412 aa23.3■■□□□ 1.32
SNRNP70-203ENST00000544278 TDRD9Q8NDG6 1382 aaKnown RBP23.28■■□□□ 1.32
SNRNP70-203ENST00000544278 GTF3C3Q9Y5Q9 886 aa23.26■■□□□ 1.31
SNRNP70-203ENST00000544278 FHOD3Q2V2M9 1422 aa23.23■■□□□ 1.31
SNRNP70-203ENST00000544278 DHX57Q6P158 1386 aaKnown RBP23.22■■□□□ 1.31
SNRNP70-203ENST00000544278 CCNB3Q8WWL7 1395 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms