RNA–Protein interactions for RNA: ENST00000544278.2

SNRNP70-203, Transcript of small nuclear ribonucleoprotein U1 subunit 70, humanhuman

TSL 1 (best)

Gene SNRNP70, Length 3,221 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP70-203ENST00000544278 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.75■□□□□ 0.277e-66■■■■□ 25.2
SNRNP70-203ENST00000544278 SF3A3Q12874 501 aaKnown RBP eCLIP17.23■□□□□ 0.357e-56■■■□□ 17.6
SNRNP70-203ENST00000544278 EIF4G2P78344 907 aaKnown RBP eCLIP22.08■■□□□ 1.133e-49■■□□□ 13.3
SNRNP70-203ENST00000544278 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.83□□□□□ -0.364e-41■■□□□ 13.1
SNRNP70-203ENST00000544278 EWSR1Q01844 656 aaKnown RBP eCLIP13.4□□□□□ -0.263e-24■■□□□ 13
SNRNP70-203ENST00000544278 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.21■□□□□ 0.033e-21■■■□□ 15.8
SNRNP70-203ENST00000544278 PPIGQ13427 754 aaKnown RBP eCLIP15.06■□□□□ 05e-20■■□□□ 12
SNRNP70-203ENST00000544278 NKRFO15226 690 aaKnown RBP eCLIP17.89■□□□□ 0.452e-18■■□□□ 13.7
SNRNP70-203ENST00000544278 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.53■□□□□ 0.249e-18■□□□□ 9.9
SNRNP70-203ENST00000544278 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.43■□□□□ 0.383e-17■□□□□ 8.1
SNRNP70-203ENST00000544278 SRSF1Q07955 248 aaKnown RBP eCLIP11.88□□□□□ -0.514e-16■■□□□ 11.7
SNRNP70-203ENST00000544278 AQRO60306 1485 aaKnown RBP eCLIP22.87■■□□□ 1.255e-16■■■□□ 15.5
SNRNP70-203ENST00000544278 FTOQ9C0B1 505 aaKnown RBP eCLIP18.81■□□□□ 0.69e-16■□□□□ 8.5
SNRNP70-203ENST00000544278 SF3B4Q15427 424 aaKnown RBP eCLIP15.1■□□□□ 0.013e-15■■■■□ 26.3
SNRNP70-203ENST00000544278 PRPF4O43172 522 aaKnown RBP eCLIP16.31■□□□□ 0.23e-15■■■□□ 17.7
SNRNP70-203ENST00000544278 RBFOX2O43251 390 aaKnown RBP eCLIP12.87□□□□□ -0.359e-14■■■□□ 15.2
SNRNP70-203ENST00000544278 PUM1Q14671 1186 aaKnown RBP eCLIP15.02□□□□□ -0.011e-13■□□□□ 11.1
SNRNP70-203ENST00000544278 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.09■□□□□ 0.173e-13■■■■■ 36.2
SNRNP70-203ENST00000544278 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.28■□□□□ 0.527e-13■□□□□ 10.5
SNRNP70-203ENST00000544278 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.01□□□□□ -0.011e-12■■■■□ 25.3
SNRNP70-203ENST00000544278 RBM15Q96T37 977 aaKnown RBP eCLIP16.67■□□□□ 0.262e-12■□□□□ 11.1
SNRNP70-203ENST00000544278 PABPN1Q86U42 306 aaKnown RBP eCLIP25.59■■□□□ 1.692e-12■■■■□ 21.8
SNRNP70-203ENST00000544278 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.6■□□□□ 0.096e-12■■■□□ 17.1
SNRNP70-203ENST00000544278 TROVE2P10155 538 aaKnown RBP eCLIP16.26■□□□□ 0.192e-11■□□□□ 9.4
SNRNP70-203ENST00000544278 PCBP1Q15365 356 aaKnown RBP eCLIP15.94■□□□□ 0.142e-11■■□□□ 12.1
SNRNP70-203ENST00000544278 LSM11P83369 360 aaKnown RBP eCLIP15.11■□□□□ 0.012e-11■■■■□ 19.5
SNRNP70-203ENST00000544278 SMNDC1O75940 238 aaKnown RBP eCLIP16.13■□□□□ 0.177e-11■■■■■ 31.9
SNRNP70-203ENST00000544278 TIAL1Q01085 375 aaKnown RBP eCLIP15.77■□□□□ 0.117e-11■■□□□ 11.9
SNRNP70-203ENST00000544278 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.99■■□□□ 1.111e-10■□□□□ 11.1
SNRNP70-203ENST00000544278 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.26■□□□□ 0.031e-10■□□□□ 11
SNRNP70-203ENST00000544278 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.17■□□□□ 0.021e-10■■□□□ 12.8
SNRNP70-203ENST00000544278 EFTUD2Q15029 972 aaKnown RBP eCLIP16.67■□□□□ 0.262e-10■□□□□ 10.8
SNRNP70-203ENST00000544278 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.27□□□□□ -0.122e-10■□□□□ 10.6
SNRNP70-203ENST00000544278 AATFQ9NY61 560 aaKnown RBP eCLIP18.26■□□□□ 0.513e-10■■□□□ 14
SNRNP70-203ENST00000544278 FKBP4Q02790 459 aaKnown RBP eCLIP18.87■□□□□ 0.613e-10■□□□□ 9.7
SNRNP70-203ENST00000544278 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.42■□□□□ 0.545e-10■■■□□ 15.2
SNRNP70-203ENST00000544278 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.82■□□□□ 0.446e-10■■□□□ 14.1
SNRNP70-203ENST00000544278 WRNQ14191 1432 aaPredicted RBP eCLIP24.41■■□□□ 1.59e-10■■□□□ 11.7
SNRNP70-203ENST00000544278 FXR2P51116 673 aaKnown RBP eCLIP17.47■□□□□ 0.391e-9■□□□□ 10
SNRNP70-203ENST00000544278 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.54□□□□□ -0.082e-9■□□□□ 10.4
SNRNP70-203ENST00000544278 PABPC4Q13310 644 aaKnown RBP eCLIP17.57■□□□□ 0.44e-9■■■□□ 19.1
SNRNP70-203ENST00000544278 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.04■□□□□ 0.324e-9■■□□□ 13.8
SNRNP70-203ENST00000544278 HNRNPUQ00839 825 aaKnown RBP eCLIP22.08■■□□□ 1.134e-9■■□□□ 13
SNRNP70-203ENST00000544278 RPS11P62280 158 aaKnown RBP eCLIP14.36□□□□□ -0.115e-9■■■□□ 15.4
SNRNP70-203ENST00000544278 NCBP2P52298 156 aaKnown RBP eCLIP14.95□□□□□ -0.021e-8■■□□□ 11.9
SNRNP70-203ENST00000544278 DDX6P26196 483 aaKnown RBP eCLIP14.99□□□□□ -0.011e-8■■□□□ 14.4
SNRNP70-203ENST00000544278 TARDBPQ13148 414 aaKnown RBP eCLIP14.94□□□□□ -0.022e-8■□□□□ 10.8
SNRNP70-203ENST00000544278 SSBP05455 408 aaKnown RBP eCLIP17.78■□□□□ 0.442e-8■□□□□ 9.6
SNRNP70-203ENST00000544278 TIA1P31483 386 aaKnown RBP eCLIP15.12■□□□□ 0.013e-8■■□□□ 11.4
SNRNP70-203ENST00000544278 HNRNPMP52272 730 aaKnown RBP eCLIP22.09■■□□□ 1.133e-8■■□□□ 13.9
SNRNP70-203ENST00000544278 GTF2F1P35269 517 aaKnown RBP eCLIP17.95■□□□□ 0.464e-8■■■■□ 24.8
SNRNP70-203ENST00000544278 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.28■□□□□ 0.24e-8■□□□□ 9.6
SNRNP70-203ENST00000544278 HNRNPKP61978 463 aaKnown RBP eCLIP14.27□□□□□ -0.134e-8■■■□□ 16.5
SNRNP70-203ENST00000544278 RBM22Q9NW64 420 aaKnown RBP eCLIP16.05■□□□□ 0.164e-8■■□□□ 12.6
SNRNP70-203ENST00000544278 ZC3H11AO75152 810 aaKnown RBP eCLIP16.63■□□□□ 0.254e-8■□□□□ 11
SNRNP70-203ENST00000544278 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.42■■□□□ 1.025e-8■■□□□ 12.5
SNRNP70-203ENST00000544278 CDC40O60508 579 aaKnown RBP eCLIP14.43□□□□□ -0.15e-8■■□□□ 12.7
SNRNP70-203ENST00000544278 PCBP2Q15366 365 aaKnown RBP eCLIP15.39■□□□□ 0.055e-8■■□□□ 13.6
SNRNP70-203ENST00000544278 NONOQ15233 471 aaKnown RBP eCLIP17.73■□□□□ 0.435e-8■■□□□ 13.1
SNRNP70-203ENST00000544278 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.46■□□□□ 0.076e-8■■■■□ 23.7
SNRNP70-203ENST00000544278 FUSP35637 526 aaKnown RBP eCLIP10.24□□□□□ -0.776e-8■■□□□ 12.7
SNRNP70-203ENST00000544278 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.25■■□□□ 1.157e-8■□□□□ 10.2
SNRNP70-203ENST00000544278 G3BP1Q13283 466 aaKnown RBP eCLIP19.09■□□□□ 0.651e-7■□□□□ 8.5
SNRNP70-203ENST00000544278 LARP4Q71RC2 724 aaKnown RBP eCLIP15.68■□□□□ 0.12e-7■■□□□ 12
SNRNP70-203ENST00000544278 XRCC6P12956 609 aaKnown RBP eCLIP19.4■□□□□ 0.72e-7■■■□□ 15.7
SNRNP70-203ENST00000544278 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.26■□□□□ 0.352e-7■□□□□ 9.6
SNRNP70-203ENST00000544278 PTBP1P26599 531 aaKnown RBP eCLIP14.12□□□□□ -0.152e-7■□□□□ 10.9
SNRNP70-203ENST00000544278 ZRANB2O95218 330 aaKnown RBP eCLIP17.53■□□□□ 0.43e-7■■■□□ 16.7
SNRNP70-203ENST00000544278 DDX51Q8N8A6 666 aaKnown RBP eCLIP16■□□□□ 0.153e-7■□□□□ 9.3
SNRNP70-203ENST00000544278 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.61□□□□□ -0.233e-7■■□□□ 14.4
SNRNP70-203ENST00000544278 RPS3P23396 243 aaKnown RBP eCLIP15.3■□□□□ 0.044e-7■■■□□ 17.3
SNRNP70-203ENST00000544278 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.96■□□□□ 0.157e-7■■■■■ 43.5
SNRNP70-203ENST00000544278 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.53■□□□□ 0.47e-7■■■■■ 37.1
SNRNP70-203ENST00000544278 WDR43Q15061 677 aaKnown RBP eCLIP20.99■□□□□ 0.957e-7■■■□□ 16.9
SNRNP70-203ENST00000544278 SF3B1O75533 1304 aaKnown RBP eCLIP15.9■□□□□ 0.149e-7■■■■□ 23
SNRNP70-203ENST00000544278 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.66■□□□□ 0.261e-6■■■■■ 51.7
SNRNP70-203ENST00000544278 AARSP49588 968 aaKnown RBP eCLIP17.06■□□□□ 0.321e-6■□□□□ 8.7
SNRNP70-203ENST00000544278 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.07■□□□□ 02e-6■□□□□ 8.6
SNRNP70-203ENST00000544278 PUS1Q9Y606 427 aaKnown RBP eCLIP13.36□□□□□ -0.273e-6■■□□□ 11.9
SNRNP70-203ENST00000544278 NIPBLQ6KC79 2804 aaeCLIP12.2□□□□□ -0.463e-6■□□□□ 11.1
Retrieved 80 of 80 RNA–protein pairs in 13.1 ms