RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 DCAF8L2P0C7V8 631 aa12.44□□□□□ -0.42
SRGAP1-206ENST00000543397 NISCHQ9Y2I1 1504 aa11.97□□□□□ -0.49
SRGAP1-206ENST00000543397 SLC24A1O60721 1099 aa11.62□□□□□ -0.55
SRGAP1-206ENST00000543397 SUPT5HO00267 1087 aaKnown RBP11.52□□□□□ -0.57
SRGAP1-206ENST00000543397 EHMT2Q96KQ7 1210 aa11.5□□□□□ -0.57
SRGAP1-206ENST00000543397 SHROOM4Q9ULL8 1493 aa11.41□□□□□ -0.58
SRGAP1-206ENST00000543397 MYT1Q01538 1121 aa11.3□□□□□ -0.6
SRGAP1-206ENST00000543397 FAM9AQ8IZU1 332 aaPredicted RBP11□□□□□ -0.65
SRGAP1-206ENST00000543397 APLP2Q06481 763 aa10.96□□□□□ -0.65
SRGAP1-206ENST00000543397 ERICH6Q7L0X2 663 aa10.93□□□□□ -0.66
SRGAP1-206ENST00000543397 RANGAP1P46060 587 aaPredicted RBP10.93□□□□□ -0.66
SRGAP1-206ENST00000543397 PELP1Q8IZL8 1130 aaKnown RBP10.93□□□□□ -0.66
SRGAP1-206ENST00000543397 TTBK1Q5TCY1 1321 aaPredicted RBP10.74□□□□□ -0.69
SRGAP1-206ENST00000543397 TRIM41Q8WV44 630 aa10.71□□□□□ -0.69
SRGAP1-206ENST00000543397 ATP1B4Q9UN42 357 aaPredicted RBP10.68□□□□□ -0.7
SRGAP1-206ENST00000543397 CHIC1Q5VXU3 224 aa10.61□□□□□ -0.71
SRGAP1-206ENST00000543397 UBTFP17480 764 aaKnown RBP10.61□□□□□ -0.71
SRGAP1-206ENST00000543397 ABCC9O60706 1549 aa10.56□□□□□ -0.72
SRGAP1-206ENST00000543397 DAXXQ9UER7 740 aaPredicted RBP10.46□□□□□ -0.74
SRGAP1-206ENST00000543397 PABPN1Q86U42 306 aaKnown RBP eCLIP10.45□□□□□ -0.74
SRGAP1-206ENST00000543397 PCGF6Q9BYE7 350 aa10.44□□□□□ -0.74
SRGAP1-206ENST00000543397 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.41□□□□□ -0.74
SRGAP1-206ENST00000543397 HNRNPUL2Q1KMD3 747 aaKnown RBP10.41□□□□□ -0.74
SRGAP1-206ENST00000543397 MYT1LQ9UL68 1186 aa10.39□□□□□ -0.75
SRGAP1-206ENST00000543397 RTN4Q9NQC3 1192 aaKnown RBP10.38□□□□□ -0.75
SRGAP1-206ENST00000543397 PLPPR3Q6T4P5 718 aa10.35□□□□□ -0.75
SRGAP1-206ENST00000543397 CCER1Q8TC90 406 aaPredicted RBP10.33□□□□□ -0.76
SRGAP1-206ENST00000543397 AMER1Q5JTC6 1135 aaPredicted RBP10.28□□□□□ -0.76
SRGAP1-206ENST00000543397 PPARGC1BQ86YN6 1023 aaKnown RBP10.22□□□□□ -0.77
SRGAP1-206ENST00000543397 ZEB1P37275 1124 aaPredicted RBP10.22□□□□□ -0.77
SRGAP1-206ENST00000543397 PRKCSHP14314 528 aaPredicted RBP10.21□□□□□ -0.77
SRGAP1-206ENST00000543397 ITGAEP38570 1179 aa10.2□□□□□ -0.78
SRGAP1-206ENST00000543397 EIF5BO60841 1220 aaKnown RBP10.17□□□□□ -0.78
SRGAP1-206ENST00000543397 FBLN2P98095 1184 aa10.16□□□□□ -0.78
SRGAP1-206ENST00000543397 NCBP3Q53F19 620 aaKnown RBP10.11□□□□□ -0.79
SRGAP1-206ENST00000543397 HAP1P54257 671 aaPredicted RBP10.1□□□□□ -0.79
SRGAP1-206ENST00000543397 TULP1O00294 542 aaPredicted RBP10.09□□□□□ -0.79
SRGAP1-206ENST00000543397 LOC105371045A0A1W2PR82 267 aa10.07□□□□□ -0.8
SRGAP1-206ENST00000543397 CENPBP07199 599 aaPredicted RBP10.06□□□□□ -0.8
SRGAP1-206ENST00000543397 POLR3GLQ9BT43 218 aa10.05□□□□□ -0.8
SRGAP1-206ENST00000543397 TRIM26Q12899 539 aaPredicted RBP10.03□□□□□ -0.8
SRGAP1-206ENST00000543397 PODXL2Q9NZ53 605 aa10.03□□□□□ -0.8
SRGAP1-206ENST00000543397 HOMEZQ8IX15 550 aa10□□□□□ -0.81
SRGAP1-206ENST00000543397 SCRIBQ14160 1630 aa10□□□□□ -0.81
SRGAP1-206ENST00000543397 FAM50AQ14320 339 aaKnown RBP9.99□□□□□ -0.81
SRGAP1-206ENST00000543397 TPRNQ4KMQ1 711 aa9.99□□□□□ -0.81
SRGAP1-206ENST00000543397 NEFLP07196 543 aa9.97□□□□□ -0.81
SRGAP1-206ENST00000543397 SLC4A1APQ9BWU0 796 aaKnown RBP9.96□□□□□ -0.81
SRGAP1-206ENST00000543397 TRIM52Q96A61 297 aa9.93□□□□□ -0.82
SRGAP1-206ENST00000543397 YTHDC1Q96MU7 727 aaKnown RBP9.91□□□□□ -0.82
SRGAP1-206ENST00000543397 CNGB1Q14028 1251 aaPredicted RBP9.9□□□□□ -0.82
SRGAP1-206ENST00000543397 BCANQ96GW7 911 aa9.89□□□□□ -0.83
SRGAP1-206ENST00000543397 ARID3CA6NKF2 412 aa9.89□□□□□ -0.83
SRGAP1-206ENST00000543397 C14orf37Q86TY3 774 aa9.88□□□□□ -0.83
SRGAP1-206ENST00000543397 P3H3Q8IVL6 736 aa9.88□□□□□ -0.83
SRGAP1-206ENST00000543397 CCDC180Q9P1Z9 1646 aa9.87□□□□□ -0.83
SRGAP1-206ENST00000543397 NPM1P06748 294 aaKnown RBP eCLIP9.87□□□□□ -0.83
SRGAP1-206ENST00000543397 ZCCHC6Q5VYS8 1495 aaKnown RBP9.86□□□□□ -0.83
SRGAP1-206ENST00000543397 ARXQ96QS3 562 aa9.86□□□□□ -0.83
SRGAP1-206ENST00000543397 CSRNP3Q8WYN3 585 aa9.85□□□□□ -0.83
SRGAP1-206ENST00000543397 CDK11AQ9UQ88 783 aaPredicted RBP9.85□□□□□ -0.83
SRGAP1-206ENST00000543397 RB1CC1Q8TDY2 1594 aa9.84□□□□□ -0.83
SRGAP1-206ENST00000543397 ESF1Q9H501 851 aaKnown RBP9.82□□□□□ -0.84
SRGAP1-206ENST00000543397 ZNF777Q9ULD5 760 aaPredicted RBP9.81□□□□□ -0.84
SRGAP1-206ENST00000543397 KCNA4P22459 653 aa9.81□□□□□ -0.84
SRGAP1-206ENST00000543397 ZNF326Q5BKZ1 582 aaKnown RBP9.79□□□□□ -0.84
SRGAP1-206ENST00000543397 NEUROD1Q13562 356 aa9.78□□□□□ -0.84
SRGAP1-206ENST00000543397 NPM2Q86SE8 214 aaKnown RBP9.76□□□□□ -0.85
SRGAP1-206ENST00000543397 CHMP7Q8WUX9 453 aaPredicted RBP9.75□□□□□ -0.85
SRGAP1-206ENST00000543397 HRCP23327 699 aa9.74□□□□□ -0.85
SRGAP1-206ENST00000543397 TIMELESSQ9UNS1 1208 aa9.74□□□□□ -0.85
SRGAP1-206ENST00000543397 NACADO15069 1562 aa9.7□□□□□ -0.86
SRGAP1-206ENST00000543397 TAOK2Q9UL54 1235 aa9.7□□□□□ -0.86
SRGAP1-206ENST00000543397 STAG3Q9UJ98 1225 aa9.69□□□□□ -0.86
SRGAP1-206ENST00000543397 CHGAP10645 457 aaKnown RBP9.65□□□□□ -0.86
SRGAP1-206ENST00000543397 AEBP2Q6ZN18 517 aaPredicted RBP9.63□□□□□ -0.87
SRGAP1-206ENST00000543397 CDK11BP21127 795 aaKnown RBP9.63□□□□□ -0.87
SRGAP1-206ENST00000543397 ERCC6Q03468 1493 aa9.62□□□□□ -0.87
SRGAP1-206ENST00000543397 BAZ1BQ9UIG0 1483 aaKnown RBP9.62□□□□□ -0.87
SRGAP1-206ENST00000543397 NEFMP07197 916 aa9.61□□□□□ -0.87
SRGAP1-206ENST00000543397 ARID3AQ99856 593 aa9.6□□□□□ -0.87
SRGAP1-206ENST00000543397 TSPY4P0CV99 314 aa9.6□□□□□ -0.87
SRGAP1-206ENST00000543397 TSPY10P0CW01 314 aa9.6□□□□□ -0.87
SRGAP1-206ENST00000543397 CLSPNQ9HAW4 1339 aa9.59□□□□□ -0.87
SRGAP1-206ENST00000543397 GTF3C3Q9Y5Q9 886 aa9.58□□□□□ -0.88
SRGAP1-206ENST00000543397 DIEXFQ68CQ4 756 aaKnown RBP9.57□□□□□ -0.88
SRGAP1-206ENST00000543397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.57□□□□□ -0.88
SRGAP1-206ENST00000543397 ANP32CO43423 234 aa9.56□□□□□ -0.88
SRGAP1-206ENST00000543397 MTUS2Q5JR59 1369 aa9.56□□□□□ -0.88
SRGAP1-206ENST00000543397 KCNH8Q96L42 1107 aa9.56□□□□□ -0.88
SRGAP1-206ENST00000543397 CHIC2Q9UKJ5 165 aa9.54□□□□□ -0.88
SRGAP1-206ENST00000543397 PLEKHD1A6NEE1 506 aa9.53□□□□□ -0.88
SRGAP1-206ENST00000543397 ZBTB47Q9UFB7 747 aaPredicted RBP9.53□□□□□ -0.88
SRGAP1-206ENST00000543397 RSF1Q96T23 1441 aaPredicted RBP9.53□□□□□ -0.88
SRGAP1-206ENST00000543397 KLHL34Q8N239 644 aa9.51□□□□□ -0.89
SRGAP1-206ENST00000543397 TONSLQ96HA7 1378 aa9.5□□□□□ -0.89
SRGAP1-206ENST00000543397 NBR1Q14596 966 aa9.5□□□□□ -0.89
SRGAP1-206ENST00000543397 WRNQ14191 1432 aaPredicted RBP eCLIP9.49□□□□□ -0.89
SRGAP1-206ENST00000543397 ARID4BQ4LE39 1312 aaPredicted RBP9.48□□□□□ -0.89
SRGAP1-206ENST00000543397 BAZ1AQ9NRL2 1556 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms