RNA–Protein interactions for RNA: ENST00000543322.5

PTCD2-212, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 2 BASIC

Gene PTCD2, Length 2,029 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-212ENST00000543322 NISCHQ9Y2I1 1504 aa26.65■■□□□ 1.86
PTCD2-212ENST00000543322 CCDC180Q9P1Z9 1646 aa22.72■■□□□ 1.23
PTCD2-212ENST00000543322 ZCCHC6Q5VYS8 1495 aaKnown RBP22.63■■□□□ 1.21
PTCD2-212ENST00000543322 SHROOM4Q9ULL8 1493 aa22.6■■□□□ 1.21
PTCD2-212ENST00000543322 SUPT5HO00267 1087 aaKnown RBP22.19■■□□□ 1.14
PTCD2-212ENST00000543322 DCAF1Q9Y4B6 1507 aa21.98■■□□□ 1.11
PTCD2-212ENST00000543322 MYO15BQ96JP2 1530 aa21.83■■□□□ 1.08
PTCD2-212ENST00000543322 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
PTCD2-212ENST00000543322 DCAF8L2P0C7V8 631 aa21.68■■□□□ 1.06
PTCD2-212ENST00000543322 ABCC9O60706 1549 aa21.43■■□□□ 1.02
PTCD2-212ENST00000543322 HRCP23327 699 aa21.41■■□□□ 1.02
PTCD2-212ENST00000543322 PCGF6Q9BYE7 350 aa21.17■□□□□ 0.98
PTCD2-212ENST00000543322 SCRIBQ14160 1630 aa21.16■□□□□ 0.98
PTCD2-212ENST00000543322 RSF1Q96T23 1441 aaPredicted RBP21.1■□□□□ 0.97
PTCD2-212ENST00000543322 LOC105371045A0A1W2PR82 267 aa21.04■□□□□ 0.96
PTCD2-212ENST00000543322 RB1CC1Q8TDY2 1594 aa20.98■□□□□ 0.95
PTCD2-212ENST00000543322 NACADO15069 1562 aa20.89■□□□□ 0.93
PTCD2-212ENST00000543322 TRIM26Q12899 539 aaPredicted RBP20.83■□□□□ 0.93
PTCD2-212ENST00000543322 PPARGC1BQ86YN6 1023 aaKnown RBP20.82■□□□□ 0.92
PTCD2-212ENST00000543322 TRIM41Q8WV44 630 aa20.72■□□□□ 0.91
PTCD2-212ENST00000543322 CECR2Q9BXF3 1484 aa20.69■□□□□ 0.9
PTCD2-212ENST00000543322 MROH2BQ7Z745 1585 aa20.69■□□□□ 0.9
PTCD2-212ENST00000543322 WIZO95785 1651 aa20.6■□□□□ 0.89
PTCD2-212ENST00000543322 BAZ1AQ9NRL2 1556 aaPredicted RBP20.59■□□□□ 0.89
PTCD2-212ENST00000543322 EIF4G1Q04637 1599 aaKnown RBP20.55■□□□□ 0.88
PTCD2-212ENST00000543322 ZEB1P37275 1124 aaPredicted RBP20.49■□□□□ 0.87
PTCD2-212ENST00000543322 FAM9AQ8IZU1 332 aaPredicted RBP20.46■□□□□ 0.87
PTCD2-212ENST00000543322 TOP2AP11388 1531 aaKnown RBP20.35■□□□□ 0.85
PTCD2-212ENST00000543322 SMARCA4P51532 1647 aa20.3■□□□□ 0.84
PTCD2-212ENST00000543322 UNC13AQ9UPW8 1703 aa20.25■□□□□ 0.83
PTCD2-212ENST00000543322 SMARCA2P51531 1590 aa20.22■□□□□ 0.83
PTCD2-212ENST00000543322 EHMT2Q96KQ7 1210 aa20.2■□□□□ 0.82
PTCD2-212ENST00000543322 CCDC88BA6NC98 1476 aa20.18■□□□□ 0.82
PTCD2-212ENST00000543322 ABCC8Q09428 1581 aa20.16■□□□□ 0.82
PTCD2-212ENST00000543322 WRNQ14191 1432 aaPredicted RBP eCLIP20.1■□□□□ 0.81
PTCD2-212ENST00000543322 EEA1Q15075 1411 aa20.02■□□□□ 0.79
PTCD2-212ENST00000543322 CEP162Q5TB80 1403 aa20■□□□□ 0.79
PTCD2-212ENST00000543322 TNIKQ9UKE5 1360 aa19.97■□□□□ 0.79
PTCD2-212ENST00000543322 SOGA1O94964 1423 aa19.97■□□□□ 0.79
PTCD2-212ENST00000543322 PEG3Q9GZU2 1588 aa19.97■□□□□ 0.79
PTCD2-212ENST00000543322 BICRAQ9NZM4 1560 aa19.94■□□□□ 0.78
PTCD2-212ENST00000543322 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.88■□□□□ 0.77
PTCD2-212ENST00000543322 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
PTCD2-212ENST00000543322 CCER1Q8TC90 406 aaPredicted RBP19.85■□□□□ 0.77
PTCD2-212ENST00000543322 GOLGA3Q08378 1498 aa19.85■□□□□ 0.77
PTCD2-212ENST00000543322 CSRNP3Q8WYN3 585 aa19.83■□□□□ 0.76
PTCD2-212ENST00000543322 SCAF1Q9H7N4 1312 aaKnown RBP19.79■□□□□ 0.76
PTCD2-212ENST00000543322 KIF21BO75037 1637 aa19.79■□□□□ 0.76
PTCD2-212ENST00000543322 SYNJ1O43426 1573 aa19.77■□□□□ 0.75
PTCD2-212ENST00000543322 CEP164Q9UPV0 1460 aa19.73■□□□□ 0.75
PTCD2-212ENST00000543322 UBTFP17480 764 aaKnown RBP19.68■□□□□ 0.74
PTCD2-212ENST00000543322 ATAD2BQ9ULI0 1458 aa19.67■□□□□ 0.74
PTCD2-212ENST00000543322 PABPN1Q86U42 306 aaKnown RBP eCLIP19.67■□□□□ 0.74
PTCD2-212ENST00000543322 PELP1Q8IZL8 1130 aaKnown RBP19.65■□□□□ 0.74
PTCD2-212ENST00000543322 BAZ1BQ9UIG0 1483 aaKnown RBP19.64■□□□□ 0.73
PTCD2-212ENST00000543322 TTBK1Q5TCY1 1321 aaPredicted RBP19.64■□□□□ 0.73
PTCD2-212ENST00000543322 DIEXFQ68CQ4 756 aaKnown RBP19.58■□□□□ 0.73
PTCD2-212ENST00000543322 CLIP1P30622 1438 aa19.58■□□□□ 0.72
PTCD2-212ENST00000543322 ACIN1Q9UKV3 1341 aaKnown RBP19.57■□□□□ 0.72
PTCD2-212ENST00000543322 VPS8Q8N3P4 1428 aa19.56■□□□□ 0.72
PTCD2-212ENST00000543322 TOP2BQ02880 1626 aa19.55■□□□□ 0.72
PTCD2-212ENST00000543322 BIVM-ERCC5R4GMW8 1640 aa19.52■□□□□ 0.72
PTCD2-212ENST00000543322 RAPGEF2Q9Y4G8 1499 aa19.51■□□□□ 0.71
PTCD2-212ENST00000543322 NEUROD1Q13562 356 aa19.49■□□□□ 0.71
PTCD2-212ENST00000543322 ZNF316A6NFI3 1004 aaPredicted RBP19.43■□□□□ 0.7
PTCD2-212ENST00000543322 ERICH3Q5RHP9 1530 aa19.43■□□□□ 0.7
PTCD2-212ENST00000543322 CENPBP07199 599 aaPredicted RBP19.42■□□□□ 0.7
PTCD2-212ENST00000543322 HMGXB3Q12766 1538 aa19.37■□□□□ 0.69
PTCD2-212ENST00000543322 PRXQ9BXM0 1461 aa19.36■□□□□ 0.69
PTCD2-212ENST00000543322 HNRNPUL2Q1KMD3 747 aaKnown RBP19.33■□□□□ 0.68
PTCD2-212ENST00000543322 ARAP1Q96P48 1450 aa19.31■□□□□ 0.68
PTCD2-212ENST00000543322 APLP2Q06481 763 aa19.29■□□□□ 0.68
PTCD2-212ENST00000543322 GTF3C3Q9Y5Q9 886 aa19.29■□□□□ 0.68
PTCD2-212ENST00000543322 NCAPD3P42695 1498 aa19.28■□□□□ 0.68
PTCD2-212ENST00000543322 CUX1P39880 1505 aa19.28■□□□□ 0.68
PTCD2-212ENST00000543322 PRDM2Q13029 1718 aa19.2■□□□□ 0.66
PTCD2-212ENST00000543322 CLSPNQ9HAW4 1339 aa19.19■□□□□ 0.66
PTCD2-212ENST00000543322 KIF27Q86VH2 1401 aa19.18■□□□□ 0.66
PTCD2-212ENST00000543322 CFTRP13569 1480 aa19.17■□□□□ 0.66
PTCD2-212ENST00000543322 RRBP1Q9P2E9 1410 aaKnown RBP19.15■□□□□ 0.66
PTCD2-212ENST00000543322 DHX57Q6P158 1386 aaKnown RBP19.14■□□□□ 0.66
PTCD2-212ENST00000543322 RANGAP1P46060 587 aaPredicted RBP19.13■□□□□ 0.65
PTCD2-212ENST00000543322 MIER1Q8N108 512 aa19.13■□□□□ 0.65
PTCD2-212ENST00000543322 CUX2O14529 1486 aa19.12■□□□□ 0.65
PTCD2-212ENST00000543322 ARHGAP35Q9NRY4 1499 aa19.09■□□□□ 0.65
PTCD2-212ENST00000543322 KANK4Q5T7N3 995 aaPredicted RBP19.07■□□□□ 0.64
PTCD2-212ENST00000543322 YTHDC1Q96MU7 727 aaKnown RBP19.03■□□□□ 0.64
PTCD2-212ENST00000543322 MAP3K1Q13233 1512 aa18.99■□□□□ 0.63
PTCD2-212ENST00000543322 CCNB3Q8WWL7 1395 aa18.99■□□□□ 0.63
PTCD2-212ENST00000543322 TIAM1Q13009 1591 aa18.96■□□□□ 0.63
PTCD2-212ENST00000543322 IGF1RP08069 1367 aa18.92■□□□□ 0.62
PTCD2-212ENST00000543322 CFAP43Q8NDM7 1665 aa18.89■□□□□ 0.61
PTCD2-212ENST00000543322 FGD5Q6ZNL6 1462 aa18.88■□□□□ 0.61
PTCD2-212ENST00000543322 CADPSQ9ULU8 1353 aa18.87■□□□□ 0.61
PTCD2-212ENST00000543322 MAPKBP1O60336 1514 aa18.86■□□□□ 0.61
PTCD2-212ENST00000543322 LRRC9Q6ZRR7 1453 aa18.84■□□□□ 0.61
PTCD2-212ENST00000543322 CARMIL1Q5VZK9 1371 aa18.84■□□□□ 0.61
PTCD2-212ENST00000543322 RAB3GAP2Q9H2M9 1393 aa18.82■□□□□ 0.6
PTCD2-212ENST00000543322 PCF11O94913 1555 aaKnown RBP18.8■□□□□ 0.6
PTCD2-212ENST00000543322 FHAD1B1AJZ9 1412 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 189 ms