RNA–Protein interactions for RNA: ENST00000540013.5

MRE11-209, Transcript of MRE11 homolog, double strand break repair nuclease, humanhuman

TSL 1 (best) BASIC

Gene MRE11, Length 1,212 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11-209ENST00000540013 AEBP2Q6ZN18 517 aaPredicted RBP26.01■■□□□ 1.75
MRE11-209ENST00000540013 CHIC1Q5VXU3 224 aa24.91■■□□□ 1.58
MRE11-209ENST00000540013 SENP3Q9H4L4 574 aaPredicted RBP22.35■■□□□ 1.17
MRE11-209ENST00000540013 PHF23Q9BUL5 403 aaPredicted RBP21.92■■□□□ 1.1
MRE11-209ENST00000540013 POTEDQ86YR6 584 aa21.04■□□□□ 0.96
MRE11-209ENST00000540013 FOXD1Q16676 465 aa20.93■□□□□ 0.94
MRE11-209ENST00000540013 PLPPR3Q6T4P5 718 aa20.35■□□□□ 0.85
MRE11-209ENST00000540013 MSH5O43196 834 aa19.95■□□□□ 0.78
MRE11-209ENST00000540013 PIAS4Q8N2W9 510 aaPredicted RBP19.37■□□□□ 0.69
MRE11-209ENST00000540013 ADRA2BP18089 450 aa19.2■□□□□ 0.66
MRE11-209ENST00000540013 PPP6R1Q9UPN7 881 aa19.18■□□□□ 0.66
MRE11-209ENST00000540013 PPP4R3CPQ6ZMV5 832 aa17.87■□□□□ 0.45
MRE11-209ENST00000540013 SCAF1Q9H7N4 1312 aaKnown RBP17.8■□□□□ 0.44
MRE11-209ENST00000540013 CACNB1Q02641 598 aaPredicted RBP17.71■□□□□ 0.43
MRE11-209ENST00000540013 NCBP3Q53F19 620 aaKnown RBP17.56■□□□□ 0.4
MRE11-209ENST00000540013 DMRT2Q9Y5R5 561 aa17.56■□□□□ 0.4
MRE11-209ENST00000540013 MAPK8IP2Q13387 824 aaPredicted RBP17.52■□□□□ 0.4
MRE11-209ENST00000540013 KCNA4P22459 653 aa17.51■□□□□ 0.39
MRE11-209ENST00000540013 CNKSR2Q8WXI2 1034 aa17.41■□□□□ 0.38
MRE11-209ENST00000540013 NPM3O75607 178 aaKnown RBP17.15■□□□□ 0.34
MRE11-209ENST00000540013 RNF216Q9NWF9 866 aaPredicted RBP17.04■□□□□ 0.32
MRE11-209ENST00000540013 DCAF8L1A6NGE4 600 aa16.98■□□□□ 0.31
MRE11-209ENST00000540013 RNF39Q9H2S5 420 aa16.93■□□□□ 0.3
MRE11-209ENST00000540013 HOXD11P31277 338 aaPredicted RBP16.92■□□□□ 0.3
MRE11-209ENST00000540013 SLC4A1APQ9BWU0 796 aaKnown RBP16.78■□□□□ 0.28
MRE11-209ENST00000540013 DNAJC5BQ9UF47 199 aa16.76■□□□□ 0.27
MRE11-209ENST00000540013 C1QBPQ07021 282 aaKnown RBP16.63■□□□□ 0.25
MRE11-209ENST00000540013 EHMT2Q96KQ7 1210 aa16.35■□□□□ 0.21
MRE11-209ENST00000540013 POTEHQ6S545 545 aa16.32■□□□□ 0.2
MRE11-209ENST00000540013 FOXD4L1Q9NU39 408 aa16.19■□□□□ 0.18
MRE11-209ENST00000540013 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.14■□□□□ 0.17
MRE11-209ENST00000540013 SLC4A2P04920 1241 aa16.13■□□□□ 0.17
MRE11-209ENST00000540013 CSRNP3Q8WYN3 585 aa16.11■□□□□ 0.17
MRE11-209ENST00000540013 ZBTB22O15209 634 aa16.06■□□□□ 0.16
MRE11-209ENST00000540013 MYCNP04198 464 aaPredicted RBP15.94■□□□□ 0.14
MRE11-209ENST00000540013 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.86■□□□□ 0.13
MRE11-209ENST00000540013 HNRNPUL2Q1KMD3 747 aaKnown RBP15.86■□□□□ 0.13
MRE11-209ENST00000540013 U3KPZ7 1027 aaPredicted RBP15.82■□□□□ 0.12
MRE11-209ENST00000540013 SAMD1Q6SPF0 538 aaPredicted RBP15.75■□□□□ 0.11
MRE11-209ENST00000540013 APLP2Q06481 763 aa15.71■□□□□ 0.11
MRE11-209ENST00000540013 ATXN8OSP0DMR3 200 aa15.68■□□□□ 0.1
MRE11-209ENST00000540013 DSG3P32926 999 aa15.55■□□□□ 0.08
MRE11-209ENST00000540013 CAPN15O75808 1086 aa15.47■□□□□ 0.07
MRE11-209ENST00000540013 SPINK5Q9NQ38 1064 aaPredicted RBP15.43■□□□□ 0.06
MRE11-209ENST00000540013 ZNF219Q9P2Y4 722 aaPredicted RBP15.38■□□□□ 0.05
MRE11-209ENST00000540013 ATF5Q9Y2D1 282 aaPredicted RBP15.32■□□□□ 0.04
MRE11-209ENST00000540013 TRHP20396 242 aaPredicted RBP15.26■□□□□ 0.03
MRE11-209ENST00000540013 POLA2Q14181 598 aa15.04■□□□□ -0
MRE11-209ENST00000540013 ABCB7O75027 752 aa15.03■□□□□ -0
MRE11-209ENST00000540013 ZBTB12Q9Y330 459 aaPredicted RBP14.96□□□□□ -0.01
MRE11-209ENST00000540013 CHRDL2Q6WN34 429 aa14.92□□□□□ -0.02
MRE11-209ENST00000540013 FBLN2P98095 1184 aa14.9□□□□□ -0.02
MRE11-209ENST00000540013 RBM42Q9BTD8 480 aaKnown RBP14.87□□□□□ -0.03
MRE11-209ENST00000540013 SP7Q8TDD2 431 aaPredicted RBP14.86□□□□□ -0.03
MRE11-209ENST00000540013 MKRN4PQ13434 485 aaPredicted RBP14.7□□□□□ -0.06
MRE11-209ENST00000540013 FKBP8Q14318 412 aa14.6□□□□□ -0.07
MRE11-209ENST00000540013 SPDYE4A6NLX3 237 aa14.52□□□□□ -0.09
MRE11-209ENST00000540013 SPDYE2BA6NHP3 402 aa14.5□□□□□ -0.09
MRE11-209ENST00000540013 SPDYE6P0CI01 402 aa14.5□□□□□ -0.09
MRE11-209ENST00000540013 SPDYE2Q495Y8 402 aa14.5□□□□□ -0.09
MRE11-209ENST00000540013 OSCARQ8IYS5 282 aa14.5□□□□□ -0.09
MRE11-209ENST00000540013 ZNF692Q9BU19 519 aaPredicted RBP14.41□□□□□ -0.1
MRE11-209ENST00000540013 HAX1O00165 279 aa14.38□□□□□ -0.11
MRE11-209ENST00000540013 PIP4P2Q8N4L2 257 aa14.36□□□□□ -0.11
MRE11-209ENST00000540013 SSUH2Q9Y2M2 353 aa14.33□□□□□ -0.12
MRE11-209ENST00000540013 AKT1S1Q96B36 256 aa14.32□□□□□ -0.12
MRE11-209ENST00000540013 PROM2Q8N271 834 aa14.28□□□□□ -0.12
MRE11-209ENST00000540013 PABPN1Q86U42 306 aaKnown RBP eCLIP14.2□□□□□ -0.14
MRE11-209ENST00000540013 REM2Q8IYK8 340 aaPredicted RBP14.2□□□□□ -0.14
MRE11-209ENST00000540013 FBXO3Q9UK99 471 aa14.2□□□□□ -0.14
MRE11-209ENST00000540013 STAG3Q9UJ98 1225 aa14.11□□□□□ -0.15
MRE11-209ENST00000540013 FXR2P51116 673 aaKnown RBP eCLIP14.1□□□□□ -0.15
MRE11-209ENST00000540013 EVX2Q03828 476 aa14.1□□□□□ -0.15
MRE11-209ENST00000540013 PITPNM1O00562 1244 aa14.07□□□□□ -0.16
MRE11-209ENST00000540013 SPDYE1Q8NFV5 336 aaPredicted RBP14.05□□□□□ -0.16
MRE11-209ENST00000540013 LHX8Q68G74 356 aa13.93□□□□□ -0.18
MRE11-209ENST00000540013 CLEC11AQ9Y240 323 aa13.91□□□□□ -0.18
MRE11-209ENST00000540013 VASPP50552 380 aaPredicted RBP13.9□□□□□ -0.18
MRE11-209ENST00000540013 PLSCR2Q9NRY7 297 aa13.87□□□□□ -0.19
MRE11-209ENST00000540013 PLEKHG5O94827 1062 aa13.84□□□□□ -0.19
MRE11-209ENST00000540013 PRR29P0C7W0 189 aa13.84□□□□□ -0.19
MRE11-209ENST00000540013 PLCD3Q8N3E9 789 aa13.8□□□□□ -0.2
MRE11-209ENST00000540013 MIER1Q8N108 512 aa13.78□□□□□ -0.2
MRE11-209ENST00000540013 ZBTB47Q9UFB7 747 aaPredicted RBP13.75□□□□□ -0.21
MRE11-209ENST00000540013 GABBR2O75899 941 aa13.73□□□□□ -0.21
MRE11-209ENST00000540013 PRKAR2AP13861 404 aaKnown RBP13.7□□□□□ -0.22
MRE11-209ENST00000540013 C19orf67A6NJJ6 358 aa13.69□□□□□ -0.22
MRE11-209ENST00000540013 KLHL34Q8N239 644 aa13.66□□□□□ -0.22
MRE11-209ENST00000540013 IFNLR1Q8IU57 520 aaPredicted RBP13.65□□□□□ -0.22
MRE11-209ENST00000540013 CREBZFQ9NS37 354 aa13.61□□□□□ -0.23
MRE11-209ENST00000540013 AMER1Q5JTC6 1135 aaPredicted RBP13.6□□□□□ -0.23
MRE11-209ENST00000540013 SPOCK2Q92563 424 aa13.57□□□□□ -0.24
MRE11-209ENST00000540013 NPM1P06748 294 aaKnown RBP eCLIP13.53□□□□□ -0.24
MRE11-209ENST00000540013 SLC24A1O60721 1099 aa13.51□□□□□ -0.25
MRE11-209ENST00000540013 CHADLQ6NUI6 762 aa13.48□□□□□ -0.25
MRE11-209ENST00000540013 MNX1P50219 401 aaPredicted RBP13.46□□□□□ -0.25
MRE11-209ENST00000540013 FARP1Q9Y4F1 1045 aaPredicted RBP13.45□□□□□ -0.26
MRE11-209ENST00000540013 POTEIP0CG38 1075 aa13.42□□□□□ -0.26
MRE11-209ENST00000540013 RTN4Q9NQC3 1192 aaKnown RBP13.4□□□□□ -0.26
MRE11-209ENST00000540013 NUBP1P53384 320 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms