RNA–Protein interactions for RNA: ENST00000537047.5

CCDC7-208, Transcript of coiled-coil domain containing 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC7, Length 657 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-208ENST00000537047 AEBP2Q6ZN18 517 aaPredicted RBP37.65■■■■□ 3.62
CCDC7-208ENST00000537047 CHIC1Q5VXU3 224 aa35.82■■■■□ 3.32
CCDC7-208ENST00000537047 SENP3Q9H4L4 574 aaPredicted RBP32■■■□□ 2.71
CCDC7-208ENST00000537047 PHF23Q9BUL5 403 aaPredicted RBP31.66■■■□□ 2.66
CCDC7-208ENST00000537047 FOXD1Q16676 465 aa29.88■■■□□ 2.37
CCDC7-208ENST00000537047 PLPPR3Q6T4P5 718 aa28.64■■■□□ 2.18
CCDC7-208ENST00000537047 PPP6R1Q9UPN7 881 aa28.07■■■□□ 2.08
CCDC7-208ENST00000537047 ADRA2BP18089 450 aa27.97■■■□□ 2.07
CCDC7-208ENST00000537047 PIAS4Q8N2W9 510 aaPredicted RBP27.9■■■□□ 2.06
CCDC7-208ENST00000537047 MSH5O43196 834 aa27.83■■■□□ 2.05
CCDC7-208ENST00000537047 POTEDQ86YR6 584 aa27.02■■□□□ 1.92
CCDC7-208ENST00000537047 MAPK8IP2Q13387 824 aaPredicted RBP25.67■■□□□ 1.7
CCDC7-208ENST00000537047 SCAF1Q9H7N4 1312 aaKnown RBP25.48■■□□□ 1.67
CCDC7-208ENST00000537047 DMRT2Q9Y5R5 561 aa25.42■■□□□ 1.66
CCDC7-208ENST00000537047 PPP4R3CPQ6ZMV5 832 aa25.16■■□□□ 1.62
CCDC7-208ENST00000537047 CNKSR2Q8WXI2 1034 aa24.63■■□□□ 1.53
CCDC7-208ENST00000537047 HOXD11P31277 338 aaPredicted RBP24.55■■□□□ 1.52
CCDC7-208ENST00000537047 RNF216Q9NWF9 866 aaPredicted RBP24.38■■□□□ 1.49
CCDC7-208ENST00000537047 DCAF8L1A6NGE4 600 aa24.35■■□□□ 1.49
CCDC7-208ENST00000537047 NCBP3Q53F19 620 aaKnown RBP24.16■■□□□ 1.46
CCDC7-208ENST00000537047 NPM3O75607 178 aaKnown RBP23.9■■□□□ 1.42
CCDC7-208ENST00000537047 CACNB1Q02641 598 aaPredicted RBP23.83■■□□□ 1.41
CCDC7-208ENST00000537047 RNF39Q9H2S5 420 aa23.81■■□□□ 1.4
CCDC7-208ENST00000537047 KCNA4P22459 653 aa23.69■■□□□ 1.38
CCDC7-208ENST00000537047 DNAJC5BQ9UF47 199 aa23.63■■□□□ 1.37
CCDC7-208ENST00000537047 C1QBPQ07021 282 aaKnown RBP23.43■■□□□ 1.34
CCDC7-208ENST00000537047 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.35■■□□□ 1.33
CCDC7-208ENST00000537047 U3KPZ7 1027 aaPredicted RBP22.92■■□□□ 1.26
CCDC7-208ENST00000537047 SLC4A2P04920 1241 aa22.81■■□□□ 1.24
CCDC7-208ENST00000537047 SPINK5Q9NQ38 1064 aaPredicted RBP22.58■■□□□ 1.21
CCDC7-208ENST00000537047 CAPN15O75808 1086 aa22.47■■□□□ 1.19
CCDC7-208ENST00000537047 DSG3P32926 999 aa22.35■■□□□ 1.17
CCDC7-208ENST00000537047 SLC4A1APQ9BWU0 796 aaKnown RBP22.34■■□□□ 1.17
CCDC7-208ENST00000537047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.21■■□□□ 1.15
CCDC7-208ENST00000537047 HNRNPUL2Q1KMD3 747 aaKnown RBP22.21■■□□□ 1.15
CCDC7-208ENST00000537047 APLP2Q06481 763 aa22.18■■□□□ 1.14
CCDC7-208ENST00000537047 TRHP20396 242 aaPredicted RBP22.15■■□□□ 1.14
CCDC7-208ENST00000537047 SAMD1Q6SPF0 538 aaPredicted RBP22.12■■□□□ 1.13
CCDC7-208ENST00000537047 ZNF219Q9P2Y4 722 aaPredicted RBP22.08■■□□□ 1.13
CCDC7-208ENST00000537047 MYCNP04198 464 aaPredicted RBP22.05■■□□□ 1.12
CCDC7-208ENST00000537047 ABCB7O75027 752 aa22■■□□□ 1.11
CCDC7-208ENST00000537047 FOXD4L1Q9NU39 408 aa21.9■■□□□ 1.1
CCDC7-208ENST00000537047 ZBTB22O15209 634 aa21.84■■□□□ 1.09
CCDC7-208ENST00000537047 ATF5Q9Y2D1 282 aaPredicted RBP21.62■■□□□ 1.05
CCDC7-208ENST00000537047 POLA2Q14181 598 aa21.6■■□□□ 1.05
CCDC7-208ENST00000537047 RBM42Q9BTD8 480 aaKnown RBP21.25■□□□□ 0.99
CCDC7-208ENST00000537047 ATXN8OSP0DMR3 200 aa21.21■□□□□ 0.99
CCDC7-208ENST00000537047 POTEHQ6S545 545 aa21.18■□□□□ 0.98
CCDC7-208ENST00000537047 ZBTB12Q9Y330 459 aaPredicted RBP21.09■□□□□ 0.97
CCDC7-208ENST00000537047 CSRNP3Q8WYN3 585 aa21.04■□□□□ 0.96
CCDC7-208ENST00000537047 EHMT2Q96KQ7 1210 aa20.95■□□□□ 0.94
CCDC7-208ENST00000537047 OSCARQ8IYS5 282 aa20.9■□□□□ 0.94
CCDC7-208ENST00000537047 AKT1S1Q96B36 256 aa20.82■□□□□ 0.92
CCDC7-208ENST00000537047 CHRDL2Q6WN34 429 aa20.77■□□□□ 0.92
CCDC7-208ENST00000537047 FBLN2P98095 1184 aa20.65■□□□□ 0.9
CCDC7-208ENST00000537047 REM2Q8IYK8 340 aaPredicted RBP20.65■□□□□ 0.9
CCDC7-208ENST00000537047 MKRN4PQ13434 485 aaPredicted RBP20.62■□□□□ 0.89
CCDC7-208ENST00000537047 SPDYE2BA6NHP3 402 aa20.5■□□□□ 0.87
CCDC7-208ENST00000537047 SPDYE6P0CI01 402 aa20.5■□□□□ 0.87
CCDC7-208ENST00000537047 SPDYE2Q495Y8 402 aa20.5■□□□□ 0.87
CCDC7-208ENST00000537047 PITPNM1O00562 1244 aa20.43■□□□□ 0.86
CCDC7-208ENST00000537047 PIP4P2Q8N4L2 257 aa20.33■□□□□ 0.85
CCDC7-208ENST00000537047 ZNF692Q9BU19 519 aaPredicted RBP20.28■□□□□ 0.84
CCDC7-208ENST00000537047 SSUH2Q9Y2M2 353 aa20.27■□□□□ 0.84
CCDC7-208ENST00000537047 FXR2P51116 673 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC7-208ENST00000537047 SPDYE1Q8NFV5 336 aaPredicted RBP20.1■□□□□ 0.81
CCDC7-208ENST00000537047 CLEC11AQ9Y240 323 aa20.08■□□□□ 0.81
CCDC7-208ENST00000537047 PABPN1Q86U42 306 aaKnown RBP eCLIP20■□□□□ 0.79
CCDC7-208ENST00000537047 HAX1O00165 279 aa19.9■□□□□ 0.78
CCDC7-208ENST00000537047 SP7Q8TDD2 431 aaPredicted RBP19.9■□□□□ 0.78
CCDC7-208ENST00000537047 PRKAR2AP13861 404 aaKnown RBP19.89■□□□□ 0.77
CCDC7-208ENST00000537047 PRR29P0C7W0 189 aa19.76■□□□□ 0.75
CCDC7-208ENST00000537047 EVX2Q03828 476 aa19.75■□□□□ 0.75
CCDC7-208ENST00000537047 CHADLQ6NUI6 762 aa19.74■□□□□ 0.75
CCDC7-208ENST00000537047 SPDYE4A6NLX3 237 aa19.68■□□□□ 0.74
CCDC7-208ENST00000537047 C19orf67A6NJJ6 358 aa19.58■□□□□ 0.72
CCDC7-208ENST00000537047 STAG3Q9UJ98 1225 aa19.43■□□□□ 0.7
CCDC7-208ENST00000537047 FARP1Q9Y4F1 1045 aaPredicted RBP19.42■□□□□ 0.7
CCDC7-208ENST00000537047 CREBZFQ9NS37 354 aa19.34■□□□□ 0.69
CCDC7-208ENST00000537047 GABBR2O75899 941 aa19.26■□□□□ 0.67
CCDC7-208ENST00000537047 CD44P16070 742 aaKnown RBP19.26■□□□□ 0.67
CCDC7-208ENST00000537047 PROM2Q8N271 834 aa19.23■□□□□ 0.67
CCDC7-208ENST00000537047 MNX1P50219 401 aaPredicted RBP19.05■□□□□ 0.64
CCDC7-208ENST00000537047 FKBP8Q14318 412 aa19.04■□□□□ 0.64
CCDC7-208ENST00000537047 ZRANB1Q9UGI0 708 aa19.01■□□□□ 0.63
CCDC7-208ENST00000537047 ZNF579Q8NAF0 562 aaKnown RBP18.98■□□□□ 0.63
CCDC7-208ENST00000537047 NPM1P06748 294 aaKnown RBP eCLIP18.92■□□□□ 0.62
CCDC7-208ENST00000537047 CLCN6P51797 869 aa18.92■□□□□ 0.62
CCDC7-208ENST00000537047 POTEIP0CG38 1075 aa18.9■□□□□ 0.62
CCDC7-208ENST00000537047 PAK3O75914 559 aaPredicted RBP18.82■□□□□ 0.6
CCDC7-208ENST00000537047 PHF12Q96QT6 1004 aa18.79■□□□□ 0.6
CCDC7-208ENST00000537047 GALR2O43603 387 aaPredicted RBP18.77■□□□□ 0.6
CCDC7-208ENST00000537047 MIER1Q8N108 512 aa18.74■□□□□ 0.59
CCDC7-208ENST00000537047 DCBLD2Q96PD2 775 aa18.72■□□□□ 0.59
CCDC7-208ENST00000537047 LHX8Q68G74 356 aa18.68■□□□□ 0.58
CCDC7-208ENST00000537047 TSPYL2Q9H2G4 693 aaPredicted RBP18.64■□□□□ 0.57
CCDC7-208ENST00000537047 PLEKHG5O94827 1062 aa18.62■□□□□ 0.57
CCDC7-208ENST00000537047 PLCD3Q8N3E9 789 aa18.61■□□□□ 0.57
CCDC7-208ENST00000537047 CCDC61Q9Y6R9 512 aa18.56■□□□□ 0.56
CCDC7-208ENST00000537047 MS4A3Q96HJ5 214 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms