RNA–Protein interactions for RNA: ENST00000534216.5

ATPAF1-211, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 5

Gene ATPAF1, Length 693 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-211ENST00000534216 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
ATPAF1-211ENST00000534216 CHIC1Q5VXU3 224 aa22.21■■□□□ 1.15
ATPAF1-211ENST00000534216 PHF23Q9BUL5 403 aaPredicted RBP19.53■□□□□ 0.72
ATPAF1-211ENST00000534216 SENP3Q9H4L4 574 aaPredicted RBP19.34■□□□□ 0.69
ATPAF1-211ENST00000534216 POTEDQ86YR6 584 aa18.17■□□□□ 0.5
ATPAF1-211ENST00000534216 PLPPR3Q6T4P5 718 aa18■□□□□ 0.47
ATPAF1-211ENST00000534216 FOXD1Q16676 465 aa17.97■□□□□ 0.47
ATPAF1-211ENST00000534216 PPP6R1Q9UPN7 881 aa17.25■□□□□ 0.35
ATPAF1-211ENST00000534216 ADRA2BP18089 450 aa17.22■□□□□ 0.35
ATPAF1-211ENST00000534216 PIAS4Q8N2W9 510 aaPredicted RBP16.91■□□□□ 0.3
ATPAF1-211ENST00000534216 MSH5O43196 834 aa16.58■□□□□ 0.24
ATPAF1-211ENST00000534216 PPP4R3CPQ6ZMV5 832 aa15.86■□□□□ 0.13
ATPAF1-211ENST00000534216 SCAF1Q9H7N4 1312 aaKnown RBP15.74■□□□□ 0.11
ATPAF1-211ENST00000534216 MAPK8IP2Q13387 824 aaPredicted RBP15.65■□□□□ 0.1
ATPAF1-211ENST00000534216 DMRT2Q9Y5R5 561 aa15.44■□□□□ 0.06
ATPAF1-211ENST00000534216 KCNA4P22459 653 aa15.43■□□□□ 0.06
ATPAF1-211ENST00000534216 CNKSR2Q8WXI2 1034 aa15.42■□□□□ 0.06
ATPAF1-211ENST00000534216 NCBP3Q53F19 620 aaKnown RBP15.41■□□□□ 0.06
ATPAF1-211ENST00000534216 NPM3O75607 178 aaKnown RBP15.2■□□□□ 0.02
ATPAF1-211ENST00000534216 RNF216Q9NWF9 866 aaPredicted RBP15.14■□□□□ 0.01
ATPAF1-211ENST00000534216 HOXD11P31277 338 aaPredicted RBP15.1■□□□□ 0.01
ATPAF1-211ENST00000534216 CACNB1Q02641 598 aaPredicted RBP14.88□□□□□ -0.03
ATPAF1-211ENST00000534216 DNAJC5BQ9UF47 199 aa14.78□□□□□ -0.04
ATPAF1-211ENST00000534216 DCAF8L1A6NGE4 600 aa14.75□□□□□ -0.05
ATPAF1-211ENST00000534216 SLC4A1APQ9BWU0 796 aaKnown RBP14.67□□□□□ -0.06
ATPAF1-211ENST00000534216 SLC4A2P04920 1241 aa14.38□□□□□ -0.11
ATPAF1-211ENST00000534216 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.37□□□□□ -0.11
ATPAF1-211ENST00000534216 RNF39Q9H2S5 420 aa14.21□□□□□ -0.13
ATPAF1-211ENST00000534216 FOXD4L1Q9NU39 408 aa14.21□□□□□ -0.13
ATPAF1-211ENST00000534216 ZBTB22O15209 634 aa14.2□□□□□ -0.14
ATPAF1-211ENST00000534216 EHMT2Q96KQ7 1210 aa14.18□□□□□ -0.14
ATPAF1-211ENST00000534216 U3KPZ7 1027 aaPredicted RBP14.15□□□□□ -0.14
ATPAF1-211ENST00000534216 CSRNP3Q8WYN3 585 aa14.07□□□□□ -0.16
ATPAF1-211ENST00000534216 MYCNP04198 464 aaPredicted RBP14.04□□□□□ -0.16
ATPAF1-211ENST00000534216 C1QBPQ07021 282 aaKnown RBP14.04□□□□□ -0.16
ATPAF1-211ENST00000534216 POTEHQ6S545 545 aa14.01□□□□□ -0.17
ATPAF1-211ENST00000534216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.94□□□□□ -0.18
ATPAF1-211ENST00000534216 HNRNPUL2Q1KMD3 747 aaKnown RBP13.94□□□□□ -0.18
ATPAF1-211ENST00000534216 SAMD1Q6SPF0 538 aaPredicted RBP13.89□□□□□ -0.19
ATPAF1-211ENST00000534216 APLP2Q06481 763 aa13.8□□□□□ -0.2
ATPAF1-211ENST00000534216 SPINK5Q9NQ38 1064 aaPredicted RBP13.77□□□□□ -0.21
ATPAF1-211ENST00000534216 ATXN8OSP0DMR3 200 aa13.72□□□□□ -0.21
ATPAF1-211ENST00000534216 CAPN15O75808 1086 aa13.7□□□□□ -0.22
ATPAF1-211ENST00000534216 ATF5Q9Y2D1 282 aaPredicted RBP13.68□□□□□ -0.22
ATPAF1-211ENST00000534216 TRHP20396 242 aaPredicted RBP13.62□□□□□ -0.23
ATPAF1-211ENST00000534216 ZNF219Q9P2Y4 722 aaPredicted RBP13.62□□□□□ -0.23
ATPAF1-211ENST00000534216 DSG3P32926 999 aa13.5□□□□□ -0.25
ATPAF1-211ENST00000534216 ABCB7O75027 752 aa13.43□□□□□ -0.26
ATPAF1-211ENST00000534216 POLA2Q14181 598 aa13.4□□□□□ -0.26
ATPAF1-211ENST00000534216 ZBTB12Q9Y330 459 aaPredicted RBP13.17□□□□□ -0.3
ATPAF1-211ENST00000534216 FBLN2P98095 1184 aa13.09□□□□□ -0.31
ATPAF1-211ENST00000534216 MKRN4PQ13434 485 aaPredicted RBP13.09□□□□□ -0.31
ATPAF1-211ENST00000534216 OSCARQ8IYS5 282 aa12.95□□□□□ -0.34
ATPAF1-211ENST00000534216 RBM42Q9BTD8 480 aaKnown RBP12.86□□□□□ -0.35
ATPAF1-211ENST00000534216 SPDYE2BA6NHP3 402 aa12.82□□□□□ -0.36
ATPAF1-211ENST00000534216 SPDYE6P0CI01 402 aa12.82□□□□□ -0.36
ATPAF1-211ENST00000534216 SPDYE2Q495Y8 402 aa12.82□□□□□ -0.36
ATPAF1-211ENST00000534216 SPDYE4A6NLX3 237 aa12.75□□□□□ -0.37
ATPAF1-211ENST00000534216 ZNF692Q9BU19 519 aaPredicted RBP12.75□□□□□ -0.37
ATPAF1-211ENST00000534216 SSUH2Q9Y2M2 353 aa12.72□□□□□ -0.37
ATPAF1-211ENST00000534216 FKBP8Q14318 412 aa12.71□□□□□ -0.37
ATPAF1-211ENST00000534216 AKT1S1Q96B36 256 aa12.69□□□□□ -0.38
ATPAF1-211ENST00000534216 PABPN1Q86U42 306 aaKnown RBP eCLIP12.59□□□□□ -0.39
ATPAF1-211ENST00000534216 REM2Q8IYK8 340 aaPredicted RBP12.58□□□□□ -0.4
ATPAF1-211ENST00000534216 PROM2Q8N271 834 aa12.56□□□□□ -0.4
ATPAF1-211ENST00000534216 SP7Q8TDD2 431 aaPredicted RBP12.53□□□□□ -0.4
ATPAF1-211ENST00000534216 SPDYE1Q8NFV5 336 aaPredicted RBP12.45□□□□□ -0.42
ATPAF1-211ENST00000534216 PITPNM1O00562 1244 aa12.43□□□□□ -0.42
ATPAF1-211ENST00000534216 CLEC11AQ9Y240 323 aa12.39□□□□□ -0.43
ATPAF1-211ENST00000534216 STAG3Q9UJ98 1225 aa12.37□□□□□ -0.43
ATPAF1-211ENST00000534216 CHRDL2Q6WN34 429 aa12.35□□□□□ -0.43
ATPAF1-211ENST00000534216 PRR29P0C7W0 189 aa12.27□□□□□ -0.45
ATPAF1-211ENST00000534216 FBXO3Q9UK99 471 aa12.27□□□□□ -0.45
ATPAF1-211ENST00000534216 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.45
ATPAF1-211ENST00000534216 PIP4P2Q8N4L2 257 aa12.18□□□□□ -0.46
ATPAF1-211ENST00000534216 PLSCR2Q9NRY7 297 aa12.12□□□□□ -0.47
ATPAF1-211ENST00000534216 PRKAR2AP13861 404 aaKnown RBP12.11□□□□□ -0.47
ATPAF1-211ENST00000534216 VASPP50552 380 aaPredicted RBP12.11□□□□□ -0.47
ATPAF1-211ENST00000534216 CREBZFQ9NS37 354 aa12.11□□□□□ -0.47
ATPAF1-211ENST00000534216 CHADLQ6NUI6 762 aa12.1□□□□□ -0.47
ATPAF1-211ENST00000534216 MIER1Q8N108 512 aa12.09□□□□□ -0.47
ATPAF1-211ENST00000534216 PLCD3Q8N3E9 789 aa12.07□□□□□ -0.48
ATPAF1-211ENST00000534216 PLEKHG5O94827 1062 aa12.03□□□□□ -0.48
ATPAF1-211ENST00000534216 MNX1P50219 401 aaPredicted RBP11.99□□□□□ -0.49
ATPAF1-211ENST00000534216 FARP1Q9Y4F1 1045 aaPredicted RBP11.99□□□□□ -0.49
ATPAF1-211ENST00000534216 IFNLR1Q8IU57 520 aaPredicted RBP11.95□□□□□ -0.5
ATPAF1-211ENST00000534216 ZBTB47Q9UFB7 747 aaPredicted RBP11.93□□□□□ -0.5
ATPAF1-211ENST00000534216 NPM1P06748 294 aaKnown RBP eCLIP11.9□□□□□ -0.5
ATPAF1-211ENST00000534216 KLHL34Q8N239 644 aa11.9□□□□□ -0.5
ATPAF1-211ENST00000534216 HAX1O00165 279 aa11.87□□□□□ -0.51
ATPAF1-211ENST00000534216 NUBP1P53384 320 aa11.81□□□□□ -0.52
ATPAF1-211ENST00000534216 SPOCK2Q92563 424 aa11.81□□□□□ -0.52
ATPAF1-211ENST00000534216 C19orf67A6NJJ6 358 aa11.8□□□□□ -0.52
ATPAF1-211ENST00000534216 RASEFQ8IZ41 740 aa11.77□□□□□ -0.53
ATPAF1-211ENST00000534216 CD44P16070 742 aaKnown RBP11.76□□□□□ -0.53
ATPAF1-211ENST00000534216 LHX8Q68G74 356 aa11.74□□□□□ -0.53
ATPAF1-211ENST00000534216 EVX2Q03828 476 aa11.71□□□□□ -0.53
ATPAF1-211ENST00000534216 TSPYL2Q9H2G4 693 aaPredicted RBP11.71□□□□□ -0.53
ATPAF1-211ENST00000534216 PAK3O75914 559 aaPredicted RBP11.7□□□□□ -0.54
ATPAF1-211ENST00000534216 FAM212AQ96EL1 285 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 414.7 ms