RNA–Protein interactions for RNA: ENST00000533455.5

CTSB-228, Transcript of cathepsin B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTSB, Length 2,009 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSB-228ENST00000533455 NISCHQ9Y2I1 1504 aa33.95■■■■□ 3.03
CTSB-228ENST00000533455 CCDC180Q9P1Z9 1646 aa28.89■■■□□ 2.22
CTSB-228ENST00000533455 SHROOM4Q9ULL8 1493 aa28.86■■■□□ 2.21
CTSB-228ENST00000533455 ZCCHC6Q5VYS8 1495 aaKnown RBP28.82■■■□□ 2.2
CTSB-228ENST00000533455 SUPT5HO00267 1087 aaKnown RBP28.42■■■□□ 2.14
CTSB-228ENST00000533455 DCAF1Q9Y4B6 1507 aa27.99■■■□□ 2.07
CTSB-228ENST00000533455 MYO15BQ96JP2 1530 aa27.94■■■□□ 2.06
CTSB-228ENST00000533455 CHIC1Q5VXU3 224 aa27.92■■■□□ 2.06
CTSB-228ENST00000533455 DCAF8L2P0C7V8 631 aa27.66■■■□□ 2.02
CTSB-228ENST00000533455 HRCP23327 699 aa27.59■■■□□ 2.01
CTSB-228ENST00000533455 ABCC9O60706 1549 aa27.28■■□□□ 1.96
CTSB-228ENST00000533455 PCGF6Q9BYE7 350 aa27.23■■□□□ 1.95
CTSB-228ENST00000533455 LOC105371045A0A1W2PR82 267 aa26.97■■□□□ 1.91
CTSB-228ENST00000533455 RSF1Q96T23 1441 aaPredicted RBP26.92■■□□□ 1.9
CTSB-228ENST00000533455 SCRIBQ14160 1630 aa26.91■■□□□ 1.9
CTSB-228ENST00000533455 PPARGC1BQ86YN6 1023 aaKnown RBP26.8■■□□□ 1.88
CTSB-228ENST00000533455 TRIM26Q12899 539 aaPredicted RBP26.78■■□□□ 1.88
CTSB-228ENST00000533455 RB1CC1Q8TDY2 1594 aa26.76■■□□□ 1.88
CTSB-228ENST00000533455 NACADO15069 1562 aa26.55■■□□□ 1.84
CTSB-228ENST00000533455 TRIM41Q8WV44 630 aa26.53■■□□□ 1.84
CTSB-228ENST00000533455 ZEB1P37275 1124 aaPredicted RBP26.41■■□□□ 1.82
CTSB-228ENST00000533455 CECR2Q9BXF3 1484 aa26.36■■□□□ 1.81
CTSB-228ENST00000533455 MROH2BQ7Z745 1585 aa26.35■■□□□ 1.81
CTSB-228ENST00000533455 WIZO95785 1651 aa26.25■■□□□ 1.79
CTSB-228ENST00000533455 BAZ1AQ9NRL2 1556 aaPredicted RBP26.22■■□□□ 1.79
CTSB-228ENST00000533455 FAM9AQ8IZU1 332 aaPredicted RBP26.2■■□□□ 1.78
CTSB-228ENST00000533455 EIF4G1Q04637 1599 aaKnown RBP26.18■■□□□ 1.78
CTSB-228ENST00000533455 TOP2AP11388 1531 aaKnown RBP25.92■■□□□ 1.74
CTSB-228ENST00000533455 EHMT2Q96KQ7 1210 aa25.85■■□□□ 1.73
CTSB-228ENST00000533455 SMARCA4P51532 1647 aa25.83■■□□□ 1.73
CTSB-228ENST00000533455 SMARCA2P51531 1590 aa25.77■■□□□ 1.72
CTSB-228ENST00000533455 WRNQ14191 1432 aaPredicted RBP eCLIP25.73■■□□□ 1.71
CTSB-228ENST00000533455 UNC13AQ9UPW8 1703 aa25.72■■□□□ 1.71
CTSB-228ENST00000533455 CCDC88BA6NC98 1476 aa25.72■■□□□ 1.71
CTSB-228ENST00000533455 ABCC8Q09428 1581 aa25.71■■□□□ 1.71
CTSB-228ENST00000533455 EEA1Q15075 1411 aa25.58■■□□□ 1.69
CTSB-228ENST00000533455 CEP162Q5TB80 1403 aa25.57■■□□□ 1.68
CTSB-228ENST00000533455 TNIKQ9UKE5 1360 aa25.55■■□□□ 1.68
CTSB-228ENST00000533455 SCAF1Q9H7N4 1312 aaKnown RBP25.54■■□□□ 1.68
CTSB-228ENST00000533455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.53■■□□□ 1.68
CTSB-228ENST00000533455 PELP1Q8IZL8 1130 aaKnown RBP25.52■■□□□ 1.68
CTSB-228ENST00000533455 CCER1Q8TC90 406 aaPredicted RBP25.51■■□□□ 1.67
CTSB-228ENST00000533455 SOGA1O94964 1423 aa25.49■■□□□ 1.67
CTSB-228ENST00000533455 PEG3Q9GZU2 1588 aa25.39■■□□□ 1.66
CTSB-228ENST00000533455 GOLGA3Q08378 1498 aa25.37■■□□□ 1.65
CTSB-228ENST00000533455 CSRNP3Q8WYN3 585 aa25.36■■□□□ 1.65
CTSB-228ENST00000533455 RUSC2Q8N2Y8 1516 aa25.35■■□□□ 1.65
CTSB-228ENST00000533455 PABPN1Q86U42 306 aaKnown RBP eCLIP25.32■■□□□ 1.64
CTSB-228ENST00000533455 BICRAQ9NZM4 1560 aa25.31■■□□□ 1.64
CTSB-228ENST00000533455 KIF21BO75037 1637 aa25.26■■□□□ 1.63
CTSB-228ENST00000533455 ACIN1Q9UKV3 1341 aaKnown RBP25.25■■□□□ 1.63
CTSB-228ENST00000533455 DIEXFQ68CQ4 756 aaKnown RBP25.22■■□□□ 1.63
CTSB-228ENST00000533455 CEP164Q9UPV0 1460 aa25.19■■□□□ 1.62
CTSB-228ENST00000533455 UBTFP17480 764 aaKnown RBP25.19■■□□□ 1.62
CTSB-228ENST00000533455 SYNJ1O43426 1573 aa25.19■■□□□ 1.62
CTSB-228ENST00000533455 TTBK1Q5TCY1 1321 aaPredicted RBP25.14■■□□□ 1.62
CTSB-228ENST00000533455 NEUROD1Q13562 356 aa25.13■■□□□ 1.61
CTSB-228ENST00000533455 BAZ1BQ9UIG0 1483 aaKnown RBP25.08■■□□□ 1.61
CTSB-228ENST00000533455 CENPBP07199 599 aaPredicted RBP25.07■■□□□ 1.6
CTSB-228ENST00000533455 ATAD2BQ9ULI0 1458 aa25.02■■□□□ 1.6
CTSB-228ENST00000533455 CLIP1P30622 1438 aa25.02■■□□□ 1.6
CTSB-228ENST00000533455 ZNF316A6NFI3 1004 aaPredicted RBP25■■□□□ 1.59
CTSB-228ENST00000533455 VPS8Q8N3P4 1428 aa25■■□□□ 1.59
CTSB-228ENST00000533455 TOP2BQ02880 1626 aa24.91■■□□□ 1.58
CTSB-228ENST00000533455 RAPGEF2Q9Y4G8 1499 aa24.89■■□□□ 1.58
CTSB-228ENST00000533455 GTF3C3Q9Y5Q9 886 aa24.89■■□□□ 1.57
CTSB-228ENST00000533455 BIVM-ERCC5R4GMW8 1640 aa24.87■■□□□ 1.57
CTSB-228ENST00000533455 ERICH3Q5RHP9 1530 aa24.8■■□□□ 1.56
CTSB-228ENST00000533455 HNRNPUL2Q1KMD3 747 aaKnown RBP24.78■■□□□ 1.56
CTSB-228ENST00000533455 APLP2Q06481 763 aa24.73■■□□□ 1.55
CTSB-228ENST00000533455 PRXQ9BXM0 1461 aa24.7■■□□□ 1.54
CTSB-228ENST00000533455 ARAP1Q96P48 1450 aa24.65■■□□□ 1.54
CTSB-228ENST00000533455 CLSPNQ9HAW4 1339 aa24.63■■□□□ 1.53
CTSB-228ENST00000533455 HMGXB3Q12766 1538 aa24.62■■□□□ 1.53
CTSB-228ENST00000533455 MIER1Q8N108 512 aa24.61■■□□□ 1.53
CTSB-228ENST00000533455 CUX1P39880 1505 aa24.54■■□□□ 1.52
CTSB-228ENST00000533455 DHX57Q6P158 1386 aaKnown RBP24.53■■□□□ 1.52
CTSB-228ENST00000533455 NCAPD3P42695 1498 aa24.52■■□□□ 1.52
CTSB-228ENST00000533455 YTHDC1Q96MU7 727 aaKnown RBP24.51■■□□□ 1.51
CTSB-228ENST00000533455 RRBP1Q9P2E9 1410 aaKnown RBP24.5■■□□□ 1.51
CTSB-228ENST00000533455 KIF27Q86VH2 1401 aa24.47■■□□□ 1.51
CTSB-228ENST00000533455 CUX2O14529 1486 aa24.46■■□□□ 1.51
CTSB-228ENST00000533455 RANGAP1P46060 587 aaPredicted RBP24.45■■□□□ 1.51
CTSB-228ENST00000533455 PRDM2Q13029 1718 aa24.41■■□□□ 1.5
CTSB-228ENST00000533455 CFTRP13569 1480 aa24.39■■□□□ 1.5
CTSB-228ENST00000533455 KANK4Q5T7N3 995 aaPredicted RBP24.39■■□□□ 1.5
CTSB-228ENST00000533455 ARHGAP35Q9NRY4 1499 aa24.36■■□□□ 1.49
CTSB-228ENST00000533455 MYT1Q01538 1121 aa24.33■■□□□ 1.49
CTSB-228ENST00000533455 CCNB3Q8WWL7 1395 aa24.29■■□□□ 1.48
CTSB-228ENST00000533455 MAP3K1Q13233 1512 aa24.27■■□□□ 1.48
CTSB-228ENST00000533455 TIAM1Q13009 1591 aa24.22■■□□□ 1.47
CTSB-228ENST00000533455 IGF1RP08069 1367 aa24.14■■□□□ 1.45
CTSB-228ENST00000533455 MAPKBP1O60336 1514 aa24.13■■□□□ 1.45
CTSB-228ENST00000533455 CFAP43Q8NDM7 1665 aa24.1■■□□□ 1.45
CTSB-228ENST00000533455 RAB3GAP2Q9H2M9 1393 aa24.09■■□□□ 1.45
CTSB-228ENST00000533455 CC2D2AQ9P2K1 1620 aa24.07■■□□□ 1.44
CTSB-228ENST00000533455 LRRC9Q6ZRR7 1453 aa24.07■■□□□ 1.44
CTSB-228ENST00000533455 CARMIL1Q5VZK9 1371 aa24.03■■□□□ 1.44
CTSB-228ENST00000533455 FGD5Q6ZNL6 1462 aa24.03■■□□□ 1.44
CTSB-228ENST00000533455 SETD5Q9C0A6 1442 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms