RNA–Protein interactions for RNA: ENST00000532297.5

NXF1-213, Transcript of nuclear RNA export factor 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NXF1, Length 2,795 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-213ENST00000532297 NISCHQ9Y2I1 1504 aa30.07■■■□□ 2.4
NXF1-213ENST00000532297 SHROOM4Q9ULL8 1493 aa26.23■■□□□ 1.79
NXF1-213ENST00000532297 SUPT5HO00267 1087 aaKnown RBP25.67■■□□□ 1.7
NXF1-213ENST00000532297 ZCCHC6Q5VYS8 1495 aaKnown RBP25.45■■□□□ 1.66
NXF1-213ENST00000532297 CCDC180Q9P1Z9 1646 aa25.36■■□□□ 1.65
NXF1-213ENST00000532297 DCAF8L2P0C7V8 631 aa25.34■■□□□ 1.65
NXF1-213ENST00000532297 MYO15BQ96JP2 1530 aa24.95■■□□□ 1.58
NXF1-213ENST00000532297 HRCP23327 699 aa24.93■■□□□ 1.58
NXF1-213ENST00000532297 CHIC1Q5VXU3 224 aa24.81■■□□□ 1.56
NXF1-213ENST00000532297 PCGF6Q9BYE7 350 aa24.5■■□□□ 1.51
NXF1-213ENST00000532297 PPARGC1BQ86YN6 1023 aaKnown RBP24.41■■□□□ 1.5
NXF1-213ENST00000532297 DCAF1Q9Y4B6 1507 aa24.4■■□□□ 1.5
NXF1-213ENST00000532297 LOC105371045A0A1W2PR82 267 aa24.3■■□□□ 1.48
NXF1-213ENST00000532297 SCRIBQ14160 1630 aa24.19■■□□□ 1.46
NXF1-213ENST00000532297 ABCC9O60706 1549 aa24.08■■□□□ 1.45
NXF1-213ENST00000532297 RSF1Q96T23 1441 aaPredicted RBP23.92■■□□□ 1.42
NXF1-213ENST00000532297 PELP1Q8IZL8 1130 aaKnown RBP23.87■■□□□ 1.41
NXF1-213ENST00000532297 RB1CC1Q8TDY2 1594 aa23.86■■□□□ 1.41
NXF1-213ENST00000532297 EHMT2Q96KQ7 1210 aa23.85■■□□□ 1.41
NXF1-213ENST00000532297 FAM9AQ8IZU1 332 aaPredicted RBP23.81■■□□□ 1.4
NXF1-213ENST00000532297 TRIM26Q12899 539 aaPredicted RBP23.75■■□□□ 1.39
NXF1-213ENST00000532297 TRIM41Q8WV44 630 aa23.69■■□□□ 1.38
NXF1-213ENST00000532297 CECR2Q9BXF3 1484 aa23.68■■□□□ 1.38
NXF1-213ENST00000532297 MROH2BQ7Z745 1585 aa23.54■■□□□ 1.36
NXF1-213ENST00000532297 ZEB1P37275 1124 aaPredicted RBP23.53■■□□□ 1.36
NXF1-213ENST00000532297 SCAF1Q9H7N4 1312 aaKnown RBP23.51■■□□□ 1.35
NXF1-213ENST00000532297 WIZO95785 1651 aa23.48■■□□□ 1.35
NXF1-213ENST00000532297 NACADO15069 1562 aa23.42■■□□□ 1.34
NXF1-213ENST00000532297 BAZ1AQ9NRL2 1556 aaPredicted RBP23.15■■□□□ 1.3
NXF1-213ENST00000532297 ABCC8Q09428 1581 aa23.08■■□□□ 1.29
NXF1-213ENST00000532297 TTBK1Q5TCY1 1321 aaPredicted RBP23.07■■□□□ 1.28
NXF1-213ENST00000532297 EIF4G1Q04637 1599 aaKnown RBP23.07■■□□□ 1.28
NXF1-213ENST00000532297 UNC13AQ9UPW8 1703 aa23■■□□□ 1.27
NXF1-213ENST00000532297 ACIN1Q9UKV3 1341 aaKnown RBP22.99■■□□□ 1.27
NXF1-213ENST00000532297 CCDC88BA6NC98 1476 aa22.94■■□□□ 1.26
NXF1-213ENST00000532297 SMARCA4P51532 1647 aa22.93■■□□□ 1.26
NXF1-213ENST00000532297 NEUROD1Q13562 356 aa22.92■■□□□ 1.26
NXF1-213ENST00000532297 PABPN1Q86U42 306 aaKnown RBP eCLIP22.91■■□□□ 1.269e-7■□□□□ 8.8
NXF1-213ENST00000532297 MYT1Q01538 1121 aa22.9■■□□□ 1.26
NXF1-213ENST00000532297 TOP2AP11388 1531 aaKnown RBP22.9■■□□□ 1.26
NXF1-213ENST00000532297 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.89■■□□□ 1.26
NXF1-213ENST00000532297 SMARCA2P51531 1590 aa22.87■■□□□ 1.25
NXF1-213ENST00000532297 SOGA1O94964 1423 aa22.82■■□□□ 1.24
NXF1-213ENST00000532297 GTF3C3Q9Y5Q9 886 aa22.8■■□□□ 1.24
NXF1-213ENST00000532297 RUSC2Q8N2Y8 1516 aa22.78■■□□□ 1.24
NXF1-213ENST00000532297 CENPBP07199 599 aaPredicted RBP22.74■■□□□ 1.23
NXF1-213ENST00000532297 CCER1Q8TC90 406 aaPredicted RBP22.72■■□□□ 1.23
NXF1-213ENST00000532297 DIEXFQ68CQ4 756 aaKnown RBP22.68■■□□□ 1.22
NXF1-213ENST00000532297 CEP162Q5TB80 1403 aa22.68■■□□□ 1.22
NXF1-213ENST00000532297 BICRAQ9NZM4 1560 aa22.62■■□□□ 1.21
NXF1-213ENST00000532297 UBTFP17480 764 aaKnown RBP22.61■■□□□ 1.21
NXF1-213ENST00000532297 CSRNP3Q8WYN3 585 aa22.54■■□□□ 1.2
NXF1-213ENST00000532297 RANGAP1P46060 587 aaPredicted RBP22.47■■□□□ 1.19
NXF1-213ENST00000532297 TNIKQ9UKE5 1360 aa22.47■■□□□ 1.19
NXF1-213ENST00000532297 WRNQ14191 1432 aaPredicted RBP eCLIP22.47■■□□□ 1.19
NXF1-213ENST00000532297 SYNJ1O43426 1573 aa22.45■■□□□ 1.19
NXF1-213ENST00000532297 GOLGA3Q08378 1498 aa22.37■■□□□ 1.17
NXF1-213ENST00000532297 EEA1Q15075 1411 aa22.35■■□□□ 1.17
NXF1-213ENST00000532297 HNRNPUL2Q1KMD3 747 aaKnown RBP22.3■■□□□ 1.16
NXF1-213ENST00000532297 ATAD2BQ9ULI0 1458 aa22.3■■□□□ 1.16
NXF1-213ENST00000532297 YTHDC1Q96MU7 727 aaKnown RBP22.29■■□□□ 1.16
NXF1-213ENST00000532297 PEG3Q9GZU2 1588 aa22.29■■□□□ 1.16
NXF1-213ENST00000532297 ZNF316A6NFI3 1004 aaPredicted RBP22.27■■□□□ 1.16
NXF1-213ENST00000532297 BAZ1BQ9UIG0 1483 aaKnown RBP22.27■■□□□ 1.16
NXF1-213ENST00000532297 RAPGEF2Q9Y4G8 1499 aa22.22■■□□□ 1.15
NXF1-213ENST00000532297 CLIP1P30622 1438 aa22.2■■□□□ 1.14
NXF1-213ENST00000532297 CEP164Q9UPV0 1460 aa22.2■■□□□ 1.14
NXF1-213ENST00000532297 KIF21BO75037 1637 aa22.16■■□□□ 1.14
NXF1-213ENST00000532297 MIER1Q8N108 512 aa22.1■■□□□ 1.13
NXF1-213ENST00000532297 VPS8Q8N3P4 1428 aa22.05■■□□□ 1.12
NXF1-213ENST00000532297 TOP2BQ02880 1626 aa22■■□□□ 1.11
NXF1-213ENST00000532297 APLP2Q06481 763 aa21.98■■□□□ 1.11
NXF1-213ENST00000532297 BIVM-ERCC5R4GMW8 1640 aa21.9■■□□□ 1.1
NXF1-213ENST00000532297 KANK4Q5T7N3 995 aaPredicted RBP21.89■■□□□ 1.09
NXF1-213ENST00000532297 CUX1P39880 1505 aa21.88■■□□□ 1.09
NXF1-213ENST00000532297 ARAP1Q96P48 1450 aa21.87■■□□□ 1.09
NXF1-213ENST00000532297 PRXQ9BXM0 1461 aa21.8■■□□□ 1.08
NXF1-213ENST00000532297 ITGAEP38570 1179 aa21.75■■□□□ 1.07
NXF1-213ENST00000532297 SUPT16HQ9Y5B9 1047 aaKnown RBP21.73■■□□□ 1.07
NXF1-213ENST00000532297 ERICH3Q5RHP9 1530 aa21.73■■□□□ 1.07
NXF1-213ENST00000532297 NCAPD3P42695 1498 aa21.71■■□□□ 1.07
NXF1-213ENST00000532297 CLSPNQ9HAW4 1339 aa21.71■■□□□ 1.07
NXF1-213ENST00000532297 HMGXB3Q12766 1538 aa21.71■■□□□ 1.07
NXF1-213ENST00000532297 DHX57Q6P158 1386 aaKnown RBP21.68■■□□□ 1.06
NXF1-213ENST00000532297 KIF27Q86VH2 1401 aa21.68■■□□□ 1.06
NXF1-213ENST00000532297 ARHGAP35Q9NRY4 1499 aa21.64■■□□□ 1.05
NXF1-213ENST00000532297 CFTRP13569 1480 aa21.64■■□□□ 1.05
NXF1-213ENST00000532297 TSHZ2Q9NRE2 1034 aa21.59■■□□□ 1.05
NXF1-213ENST00000532297 CUX2O14529 1486 aa21.59■■□□□ 1.05
NXF1-213ENST00000532297 ANP32EQ9BTT0 268 aa21.59■■□□□ 1.05
NXF1-213ENST00000532297 P3H3Q8IVL6 736 aa21.55■■□□□ 1.04
NXF1-213ENST00000532297 RRBP1Q9P2E9 1410 aaKnown RBP21.51■■□□□ 1.03
NXF1-213ENST00000532297 IGF1RP08069 1367 aa21.49■■□□□ 1.03
NXF1-213ENST00000532297 CCNB3Q8WWL7 1395 aa21.49■■□□□ 1.03
NXF1-213ENST00000532297 FGD5Q6ZNL6 1462 aa21.48■■□□□ 1.03
NXF1-213ENST00000532297 ATP1B4Q9UN42 357 aaPredicted RBP21.47■■□□□ 1.03
NXF1-213ENST00000532297 PRDM2Q13029 1718 aa21.45■■□□□ 1.02
NXF1-213ENST00000532297 BCL11AQ9H165 835 aa21.43■■□□□ 1.02
NXF1-213ENST00000532297 CARMIL1Q5VZK9 1371 aa21.41■■□□□ 1.02
NXF1-213ENST00000532297 CADPSQ9ULU8 1353 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms