RNA–Protein interactions for RNA: ENST00000531466.1

PTPRK-220, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5

Gene PTPRK, Length 311 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-220ENST00000531466 AEBP2Q6ZN18 517 aaPredicted RBP35.53■■■■□ 3.28
PTPRK-220ENST00000531466 CHIC1Q5VXU3 224 aa33.72■■■□□ 2.99
PTPRK-220ENST00000531466 SENP3Q9H4L4 574 aaPredicted RBP30.26■■■□□ 2.43
PTPRK-220ENST00000531466 PHF23Q9BUL5 403 aaPredicted RBP29.9■■■□□ 2.38
PTPRK-220ENST00000531466 FOXD1Q16676 465 aa28.24■■■□□ 2.11
PTPRK-220ENST00000531466 PLPPR3Q6T4P5 718 aa26.94■■□□□ 1.9
PTPRK-220ENST00000531466 PPP6R1Q9UPN7 881 aa26.43■■□□□ 1.82
PTPRK-220ENST00000531466 PIAS4Q8N2W9 510 aaPredicted RBP26.4■■□□□ 1.82
PTPRK-220ENST00000531466 MSH5O43196 834 aa26.38■■□□□ 1.81
PTPRK-220ENST00000531466 ADRA2BP18089 450 aa26.36■■□□□ 1.81
PTPRK-220ENST00000531466 POTEDQ86YR6 584 aa25.76■■□□□ 1.71
PTPRK-220ENST00000531466 MAPK8IP2Q13387 824 aaPredicted RBP24.22■■□□□ 1.47
PTPRK-220ENST00000531466 SCAF1Q9H7N4 1312 aaKnown RBP24.06■■□□□ 1.44
PTPRK-220ENST00000531466 DMRT2Q9Y5R5 561 aa24.01■■□□□ 1.43
PTPRK-220ENST00000531466 PPP4R3CPQ6ZMV5 832 aa23.65■■□□□ 1.38
PTPRK-220ENST00000531466 CNKSR2Q8WXI2 1034 aa23.16■■□□□ 1.3
PTPRK-220ENST00000531466 DCAF8L1A6NGE4 600 aa23.11■■□□□ 1.29
PTPRK-220ENST00000531466 HOXD11P31277 338 aaPredicted RBP23.11■■□□□ 1.29
PTPRK-220ENST00000531466 RNF216Q9NWF9 866 aaPredicted RBP22.94■■□□□ 1.26
PTPRK-220ENST00000531466 NCBP3Q53F19 620 aaKnown RBP22.71■■□□□ 1.23
PTPRK-220ENST00000531466 CACNB1Q02641 598 aaPredicted RBP22.68■■□□□ 1.22
PTPRK-220ENST00000531466 RNF39Q9H2S5 420 aa22.52■■□□□ 1.2
PTPRK-220ENST00000531466 NPM3O75607 178 aaKnown RBP22.42■■□□□ 1.18
PTPRK-220ENST00000531466 DNAJC5BQ9UF47 199 aa22.23■■□□□ 1.15
PTPRK-220ENST00000531466 C1QBPQ07021 282 aaKnown RBP22.17■■□□□ 1.14
PTPRK-220ENST00000531466 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.08■■□□□ 1.13
PTPRK-220ENST00000531466 KCNA4P22459 653 aa22.03■■□□□ 1.12
PTPRK-220ENST00000531466 U3KPZ7 1027 aaPredicted RBP21.61■■□□□ 1.05
PTPRK-220ENST00000531466 SLC4A2P04920 1241 aa21.41■■□□□ 1.02
PTPRK-220ENST00000531466 SPINK5Q9NQ38 1064 aaPredicted RBP21.32■■□□□ 1
PTPRK-220ENST00000531466 CAPN15O75808 1086 aa21.28■■□□□ 1
PTPRK-220ENST00000531466 DSG3P32926 999 aa21.1■□□□□ 0.97
PTPRK-220ENST00000531466 TRHP20396 242 aaPredicted RBP20.95■□□□□ 0.94
PTPRK-220ENST00000531466 APLP2Q06481 763 aa20.95■□□□□ 0.94
PTPRK-220ENST00000531466 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.93■□□□□ 0.94
PTPRK-220ENST00000531466 HNRNPUL2Q1KMD3 747 aaKnown RBP20.93■□□□□ 0.94
PTPRK-220ENST00000531466 SAMD1Q6SPF0 538 aaPredicted RBP20.84■□□□□ 0.93
PTPRK-220ENST00000531466 ZNF219Q9P2Y4 722 aaPredicted RBP20.84■□□□□ 0.93
PTPRK-220ENST00000531466 ABCB7O75027 752 aa20.82■□□□□ 0.92
PTPRK-220ENST00000531466 SLC4A1APQ9BWU0 796 aaKnown RBP20.79■□□□□ 0.92
PTPRK-220ENST00000531466 MYCNP04198 464 aaPredicted RBP20.71■□□□□ 0.91
PTPRK-220ENST00000531466 FOXD4L1Q9NU39 408 aa20.52■□□□□ 0.88
PTPRK-220ENST00000531466 POLA2Q14181 598 aa20.37■□□□□ 0.85
PTPRK-220ENST00000531466 ATF5Q9Y2D1 282 aaPredicted RBP20.29■□□□□ 0.84
PTPRK-220ENST00000531466 ZBTB22O15209 634 aa20.27■□□□□ 0.84
PTPRK-220ENST00000531466 POTEHQ6S545 545 aa20.18■□□□□ 0.82
PTPRK-220ENST00000531466 RBM42Q9BTD8 480 aaKnown RBP20.11■□□□□ 0.81
PTPRK-220ENST00000531466 ZBTB12Q9Y330 459 aaPredicted RBP19.9■□□□□ 0.78
PTPRK-220ENST00000531466 ATXN8OSP0DMR3 200 aa19.84■□□□□ 0.77
PTPRK-220ENST00000531466 OSCARQ8IYS5 282 aa19.74■□□□□ 0.75
PTPRK-220ENST00000531466 CHRDL2Q6WN34 429 aa19.7■□□□□ 0.74
PTPRK-220ENST00000531466 AKT1S1Q96B36 256 aa19.66■□□□□ 0.74
PTPRK-220ENST00000531466 REM2Q8IYK8 340 aaPredicted RBP19.51■□□□□ 0.71
PTPRK-220ENST00000531466 FBLN2P98095 1184 aa19.46■□□□□ 0.71
PTPRK-220ENST00000531466 MKRN4PQ13434 485 aaPredicted RBP19.34■□□□□ 0.69
PTPRK-220ENST00000531466 PITPNM1O00562 1244 aa19.32■□□□□ 0.68
PTPRK-220ENST00000531466 CSRNP3Q8WYN3 585 aa19.32■□□□□ 0.68
PTPRK-220ENST00000531466 SPDYE2BA6NHP3 402 aa19.29■□□□□ 0.68
PTPRK-220ENST00000531466 SPDYE6P0CI01 402 aa19.29■□□□□ 0.68
PTPRK-220ENST00000531466 SPDYE2Q495Y8 402 aa19.29■□□□□ 0.68
PTPRK-220ENST00000531466 PIP4P2Q8N4L2 257 aa19.25■□□□□ 0.67
PTPRK-220ENST00000531466 EHMT2Q96KQ7 1210 aa19.15■□□□□ 0.66
PTPRK-220ENST00000531466 ZNF692Q9BU19 519 aaPredicted RBP19.11■□□□□ 0.65
PTPRK-220ENST00000531466 FXR2P51116 673 aaKnown RBP eCLIP19.1■□□□□ 0.65
PTPRK-220ENST00000531466 SSUH2Q9Y2M2 353 aa19.05■□□□□ 0.64
PTPRK-220ENST00000531466 CLEC11AQ9Y240 323 aa18.99■□□□□ 0.63
PTPRK-220ENST00000531466 SPDYE1Q8NFV5 336 aaPredicted RBP18.97■□□□□ 0.63
PTPRK-220ENST00000531466 SP7Q8TDD2 431 aaPredicted RBP18.92■□□□□ 0.62
PTPRK-220ENST00000531466 HAX1O00165 279 aa18.91■□□□□ 0.62
PTPRK-220ENST00000531466 PABPN1Q86U42 306 aaKnown RBP eCLIP18.84■□□□□ 0.61
PTPRK-220ENST00000531466 PRKAR2AP13861 404 aaKnown RBP18.82■□□□□ 0.6
PTPRK-220ENST00000531466 EVX2Q03828 476 aa18.69■□□□□ 0.58
PTPRK-220ENST00000531466 PRR29P0C7W0 189 aa18.64■□□□□ 0.57
PTPRK-220ENST00000531466 CHADLQ6NUI6 762 aa18.64■□□□□ 0.57
PTPRK-220ENST00000531466 C19orf67A6NJJ6 358 aa18.5■□□□□ 0.55
PTPRK-220ENST00000531466 SPDYE4A6NLX3 237 aa18.43■□□□□ 0.54
PTPRK-220ENST00000531466 FARP1Q9Y4F1 1045 aaPredicted RBP18.32■□□□□ 0.52
PTPRK-220ENST00000531466 STAG3Q9UJ98 1225 aa18.26■□□□□ 0.51
PTPRK-220ENST00000531466 GABBR2O75899 941 aa18.24■□□□□ 0.51
PTPRK-220ENST00000531466 CD44P16070 742 aaKnown RBP18.23■□□□□ 0.51
PTPRK-220ENST00000531466 CREBZFQ9NS37 354 aa18.19■□□□□ 0.5
PTPRK-220ENST00000531466 ZRANB1Q9UGI0 708 aa17.98■□□□□ 0.47
PTPRK-220ENST00000531466 PROM2Q8N271 834 aa17.93■□□□□ 0.46
PTPRK-220ENST00000531466 ZNF579Q8NAF0 562 aaKnown RBP17.91■□□□□ 0.46
PTPRK-220ENST00000531466 POTEIP0CG38 1075 aa17.86■□□□□ 0.45
PTPRK-220ENST00000531466 MNX1P50219 401 aaPredicted RBP17.86■□□□□ 0.45
PTPRK-220ENST00000531466 CLCN6P51797 869 aa17.85■□□□□ 0.45
PTPRK-220ENST00000531466 NPM1P06748 294 aaKnown RBP eCLIP17.83■□□□□ 0.44
PTPRK-220ENST00000531466 PAK3O75914 559 aaPredicted RBP17.81■□□□□ 0.44
PTPRK-220ENST00000531466 LHX8Q68G74 356 aa17.76■□□□□ 0.43
PTPRK-220ENST00000531466 DCBLD2Q96PD2 775 aa17.76■□□□□ 0.43
PTPRK-220ENST00000531466 PHF12Q96QT6 1004 aa17.76■□□□□ 0.43
PTPRK-220ENST00000531466 GALR2O43603 387 aaPredicted RBP17.73■□□□□ 0.43
PTPRK-220ENST00000531466 MIER1Q8N108 512 aa17.59■□□□□ 0.41
PTPRK-220ENST00000531466 TSPYL2Q9H2G4 693 aaPredicted RBP17.58■□□□□ 0.4
PTPRK-220ENST00000531466 FKBP8Q14318 412 aa17.56■□□□□ 0.4
PTPRK-220ENST00000531466 PLEKHG5O94827 1062 aa17.54■□□□□ 0.4
PTPRK-220ENST00000531466 MS4A3Q96HJ5 214 aa17.49■□□□□ 0.39
PTPRK-220ENST00000531466 PLCD3Q8N3E9 789 aa17.46■□□□□ 0.39
PTPRK-220ENST00000531466 CCDC61Q9Y6R9 512 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 152.4 ms