RNA–Protein interactions for RNA: ENST00000530402.1

VPS26B-205, Transcript of VPS26, retromer complex component B, humanhuman

TSL 3

Gene VPS26B, Length 740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26B-205ENST00000530402 AEBP2Q6ZN18 517 aaPredicted RBP27.92■■■□□ 2.06
VPS26B-205ENST00000530402 CHIC1Q5VXU3 224 aa27.66■■■□□ 2.02
VPS26B-205ENST00000530402 PHF23Q9BUL5 403 aaPredicted RBP24.34■■□□□ 1.49
VPS26B-205ENST00000530402 SENP3Q9H4L4 574 aaPredicted RBP23.7■■□□□ 1.38
VPS26B-205ENST00000530402 PLPPR3Q6T4P5 718 aa22.68■■□□□ 1.22
VPS26B-205ENST00000530402 FOXD1Q16676 465 aa21.92■■□□□ 1.1
VPS26B-205ENST00000530402 ADRA2BP18089 450 aa21.43■■□□□ 1.02
VPS26B-205ENST00000530402 PPP6R1Q9UPN7 881 aa21.38■■□□□ 1.01
VPS26B-205ENST00000530402 PIAS4Q8N2W9 510 aaPredicted RBP20.83■□□□□ 0.93
VPS26B-205ENST00000530402 MSH5O43196 834 aa20.11■□□□□ 0.81
VPS26B-205ENST00000530402 PPP4R3CPQ6ZMV5 832 aa20.03■□□□□ 0.8
VPS26B-205ENST00000530402 KCNA4P22459 653 aa19.98■□□□□ 0.79
VPS26B-205ENST00000530402 NCBP3Q53F19 620 aaKnown RBP19.66■□□□□ 0.74
VPS26B-205ENST00000530402 SCAF1Q9H7N4 1312 aaKnown RBP19.65■□□□□ 0.74
VPS26B-205ENST00000530402 CNKSR2Q8WXI2 1034 aa19.38■□□□□ 0.69
VPS26B-205ENST00000530402 MAPK8IP2Q13387 824 aaPredicted RBP19.32■□□□□ 0.68
VPS26B-205ENST00000530402 NPM3O75607 178 aaKnown RBP19.3■□□□□ 0.68
VPS26B-205ENST00000530402 SLC4A1APQ9BWU0 796 aaKnown RBP19.13■□□□□ 0.65
VPS26B-205ENST00000530402 EHMT2Q96KQ7 1210 aa19.06■□□□□ 0.64
VPS26B-205ENST00000530402 DMRT2Q9Y5R5 561 aa18.94■□□□□ 0.62
VPS26B-205ENST00000530402 RNF216Q9NWF9 866 aaPredicted RBP18.89■□□□□ 0.61
VPS26B-205ENST00000530402 HOXD11P31277 338 aaPredicted RBP18.68■□□□□ 0.58
VPS26B-205ENST00000530402 CSRNP3Q8WYN3 585 aa18.57■□□□□ 0.56
VPS26B-205ENST00000530402 DNAJC5BQ9UF47 199 aa18.57■□□□□ 0.56
VPS26B-205ENST00000530402 ZBTB22O15209 634 aa18.34■□□□□ 0.53
VPS26B-205ENST00000530402 FOXD4L1Q9NU39 408 aa18.29■□□□□ 0.52
VPS26B-205ENST00000530402 DCAF8L1A6NGE4 600 aa18.27■□□□□ 0.52
VPS26B-205ENST00000530402 SLC4A2P04920 1241 aa18.1■□□□□ 0.49
VPS26B-205ENST00000530402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.92■□□□□ 0.46
VPS26B-205ENST00000530402 MYCNP04198 464 aaPredicted RBP17.85■□□□□ 0.45
VPS26B-205ENST00000530402 POTEDQ86YR6 584 aa17.63■□□□□ 0.41
VPS26B-205ENST00000530402 ATXN8OSP0DMR3 200 aa17.59■□□□□ 0.41
VPS26B-205ENST00000530402 U3KPZ7 1027 aaPredicted RBP17.58■□□□□ 0.4
VPS26B-205ENST00000530402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.56■□□□□ 0.4
VPS26B-205ENST00000530402 HNRNPUL2Q1KMD3 747 aaKnown RBP17.56■□□□□ 0.4
VPS26B-205ENST00000530402 SAMD1Q6SPF0 538 aaPredicted RBP17.5■□□□□ 0.39
VPS26B-205ENST00000530402 APLP2Q06481 763 aa17.31■□□□□ 0.36
VPS26B-205ENST00000530402 ATF5Q9Y2D1 282 aaPredicted RBP17.31■□□□□ 0.36
VPS26B-205ENST00000530402 RNF39Q9H2S5 420 aa17.23■□□□□ 0.35
VPS26B-205ENST00000530402 C1QBPQ07021 282 aaKnown RBP17.07■□□□□ 0.32
VPS26B-205ENST00000530402 ZNF219Q9P2Y4 722 aaPredicted RBP17.05■□□□□ 0.32
VPS26B-205ENST00000530402 TRHP20396 242 aaPredicted RBP17.01■□□□□ 0.31
VPS26B-205ENST00000530402 SPINK5Q9NQ38 1064 aaPredicted RBP17.01■□□□□ 0.31
VPS26B-205ENST00000530402 CAPN15O75808 1086 aa17■□□□□ 0.31
VPS26B-205ENST00000530402 FKBP8Q14318 412 aa16.84■□□□□ 0.29
VPS26B-205ENST00000530402 POLA2Q14181 598 aa16.78■□□□□ 0.28
VPS26B-205ENST00000530402 ABCB7O75027 752 aa16.69■□□□□ 0.26
VPS26B-205ENST00000530402 FBLN2P98095 1184 aa16.66■□□□□ 0.26
VPS26B-205ENST00000530402 CACNB1Q02641 598 aaPredicted RBP16.6■□□□□ 0.25
VPS26B-205ENST00000530402 MKRN4PQ13434 485 aaPredicted RBP16.56■□□□□ 0.24
VPS26B-205ENST00000530402 DSG3P32926 999 aa16.53■□□□□ 0.24
VPS26B-205ENST00000530402 ZBTB12Q9Y330 459 aaPredicted RBP16.53■□□□□ 0.24
VPS26B-205ENST00000530402 SPDYE4A6NLX3 237 aa16.45■□□□□ 0.22
VPS26B-205ENST00000530402 OSCARQ8IYS5 282 aa16.18■□□□□ 0.18
VPS26B-205ENST00000530402 FBXO3Q9UK99 471 aa16.15■□□□□ 0.18
VPS26B-205ENST00000530402 ZNF692Q9BU19 519 aaPredicted RBP16.13■□□□□ 0.17
VPS26B-205ENST00000530402 PROM2Q8N271 834 aa16.11■□□□□ 0.17
VPS26B-205ENST00000530402 SPDYE2BA6NHP3 402 aa16.09■□□□□ 0.17
VPS26B-205ENST00000530402 SPDYE6P0CI01 402 aa16.09■□□□□ 0.17
VPS26B-205ENST00000530402 SPDYE2Q495Y8 402 aa16.09■□□□□ 0.17
VPS26B-205ENST00000530402 AMER1Q5JTC6 1135 aaPredicted RBP15.99■□□□□ 0.15
VPS26B-205ENST00000530402 SSUH2Q9Y2M2 353 aa15.95■□□□□ 0.14
VPS26B-205ENST00000530402 RTN4Q9NQC3 1192 aaKnown RBP15.93■□□□□ 0.14
VPS26B-205ENST00000530402 PABPN1Q86U42 306 aaKnown RBP eCLIP15.92■□□□□ 0.14
VPS26B-205ENST00000530402 VASPP50552 380 aaPredicted RBP15.87■□□□□ 0.13
VPS26B-205ENST00000530402 RBM42Q9BTD8 480 aaKnown RBP15.79■□□□□ 0.12
VPS26B-205ENST00000530402 STAG3Q9UJ98 1225 aa15.76■□□□□ 0.11
VPS26B-205ENST00000530402 IFNLR1Q8IU57 520 aaPredicted RBP15.67■□□□□ 0.1
VPS26B-205ENST00000530402 AKT1S1Q96B36 256 aa15.65■□□□□ 0.1
VPS26B-205ENST00000530402 PLCD3Q8N3E9 789 aa15.64■□□□□ 0.09
VPS26B-205ENST00000530402 KLHL34Q8N239 644 aa15.62■□□□□ 0.09
VPS26B-205ENST00000530402 MIER1Q8N108 512 aa15.61■□□□□ 0.09
VPS26B-205ENST00000530402 SPDYE1Q8NFV5 336 aaPredicted RBP15.56■□□□□ 0.08
VPS26B-205ENST00000530402 PLEKHG5O94827 1062 aa15.54■□□□□ 0.08
VPS26B-205ENST00000530402 CLEC11AQ9Y240 323 aa15.53■□□□□ 0.08
VPS26B-205ENST00000530402 REM2Q8IYK8 340 aaPredicted RBP15.51■□□□□ 0.07
VPS26B-205ENST00000530402 SPOCK2Q92563 424 aa15.47■□□□□ 0.07
VPS26B-205ENST00000530402 PRR29P0C7W0 189 aa15.41■□□□□ 0.06
VPS26B-205ENST00000530402 ZBTB47Q9UFB7 747 aaPredicted RBP15.41■□□□□ 0.06
VPS26B-205ENST00000530402 PITPNM1O00562 1244 aa15.32■□□□□ 0.04
VPS26B-205ENST00000530402 PKD2Q13563 968 aa15.27■□□□□ 0.04
VPS26B-205ENST00000530402 DCAF8L2P0C7V8 631 aa15.25■□□□□ 0.03
VPS26B-205ENST00000530402 CREBZFQ9NS37 354 aa15.22■□□□□ 0.03
VPS26B-205ENST00000530402 CIZ1Q9ULV3 898 aaPredicted RBP15.22■□□□□ 0.03
VPS26B-205ENST00000530402 ECM2O94769 699 aaPredicted RBP15.2■□□□□ 0.02
VPS26B-205ENST00000530402 MNX1P50219 401 aaPredicted RBP15.07■□□□□ 0
VPS26B-205ENST00000530402 NUBP1P53384 320 aa15.07■□□□□ 0
VPS26B-205ENST00000530402 GSE1Q14687 1217 aa15.07■□□□□ 0
VPS26B-205ENST00000530402 DCAF8Q5TAQ9 597 aa15.07■□□□□ 0
VPS26B-205ENST00000530402 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
VPS26B-205ENST00000530402 CHADLQ6NUI6 762 aa15.05■□□□□ -0
VPS26B-205ENST00000530402 SLC24A1O60721 1099 aa15.04■□□□□ -0
VPS26B-205ENST00000530402 FAM212AQ96EL1 285 aa15.02■□□□□ -0
VPS26B-205ENST00000530402 TRIM41Q8WV44 630 aa15.01□□□□□ -0.01
VPS26B-205ENST00000530402 RGL2O15211 777 aa14.98□□□□□ -0.01
VPS26B-205ENST00000530402 CHRDL2Q6WN34 429 aa14.98□□□□□ -0.01
VPS26B-205ENST00000530402 PRKAR2AP13861 404 aaKnown RBP14.97□□□□□ -0.01
VPS26B-205ENST00000530402 RASEFQ8IZ41 740 aa14.94□□□□□ -0.02
VPS26B-205ENST00000530402 FARP1Q9Y4F1 1045 aaPredicted RBP14.93□□□□□ -0.02
VPS26B-205ENST00000530402 FXR2P51116 673 aaKnown RBP eCLIP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms