RNA–Protein interactions for RNA: ENST00000528853.1

PPFIA1-212, Transcript of PTPRF interacting protein alpha 1, humanhuman

TSL 3

Gene PPFIA1, Length 745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA1-212ENST00000528853 AEBP2Q6ZN18 517 aaPredicted RBP28.61■■■□□ 2.17
PPFIA1-212ENST00000528853 CHIC1Q5VXU3 224 aa27.04■■□□□ 1.92
PPFIA1-212ENST00000528853 SENP3Q9H4L4 574 aaPredicted RBP24.45■■□□□ 1.5
PPFIA1-212ENST00000528853 PHF23Q9BUL5 403 aaPredicted RBP24.1■■□□□ 1.45
PPFIA1-212ENST00000528853 FOXD1Q16676 465 aa22.79■■□□□ 1.24
PPFIA1-212ENST00000528853 PLPPR3Q6T4P5 718 aa21.55■■□□□ 1.04
PPFIA1-212ENST00000528853 MSH5O43196 834 aa21.4■■□□□ 1.02
PPFIA1-212ENST00000528853 PIAS4Q8N2W9 510 aaPredicted RBP21.27■■□□□ 1
PPFIA1-212ENST00000528853 PPP6R1Q9UPN7 881 aa21.19■□□□□ 0.98
PPFIA1-212ENST00000528853 ADRA2BP18089 450 aa21.12■□□□□ 0.97
PPFIA1-212ENST00000528853 POTEDQ86YR6 584 aa21.12■□□□□ 0.97
PPFIA1-212ENST00000528853 MAPK8IP2Q13387 824 aaPredicted RBP19.44■□□□□ 0.7
PPFIA1-212ENST00000528853 DMRT2Q9Y5R5 561 aa19.36■□□□□ 0.69
PPFIA1-212ENST00000528853 SCAF1Q9H7N4 1312 aaKnown RBP19.34■□□□□ 0.69
PPFIA1-212ENST00000528853 PPP4R3CPQ6ZMV5 832 aa18.86■□□□□ 0.61
PPFIA1-212ENST00000528853 HOXD11P31277 338 aaPredicted RBP18.59■□□□□ 0.57
PPFIA1-212ENST00000528853 DCAF8L1A6NGE4 600 aa18.56■□□□□ 0.56
PPFIA1-212ENST00000528853 CNKSR2Q8WXI2 1034 aa18.55■□□□□ 0.56
PPFIA1-212ENST00000528853 CACNB1Q02641 598 aaPredicted RBP18.44■□□□□ 0.54
PPFIA1-212ENST00000528853 RNF216Q9NWF9 866 aaPredicted RBP18.42■□□□□ 0.54
PPFIA1-212ENST00000528853 RNF39Q9H2S5 420 aa18.24■□□□□ 0.51
PPFIA1-212ENST00000528853 NCBP3Q53F19 620 aaKnown RBP18.11■□□□□ 0.49
PPFIA1-212ENST00000528853 DNAJC5BQ9UF47 199 aa18■□□□□ 0.47
PPFIA1-212ENST00000528853 C1QBPQ07021 282 aaKnown RBP17.97■□□□□ 0.47
PPFIA1-212ENST00000528853 NPM3O75607 178 aaKnown RBP17.83■□□□□ 0.44
PPFIA1-212ENST00000528853 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.71■□□□□ 0.433e-7■■□□□ 13.1
PPFIA1-212ENST00000528853 KCNA4P22459 653 aa17.35■□□□□ 0.37
PPFIA1-212ENST00000528853 U3KPZ7 1027 aaPredicted RBP17.32■□□□□ 0.36
PPFIA1-212ENST00000528853 SPINK5Q9NQ38 1064 aaPredicted RBP17.1■□□□□ 0.33
PPFIA1-212ENST00000528853 CAPN15O75808 1086 aa17.09■□□□□ 0.33
PPFIA1-212ENST00000528853 SLC4A2P04920 1241 aa17.06■□□□□ 0.32
PPFIA1-212ENST00000528853 DSG3P32926 999 aa17.03■□□□□ 0.32
PPFIA1-212ENST00000528853 APLP2Q06481 763 aa16.84■□□□□ 0.29
PPFIA1-212ENST00000528853 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.8■□□□□ 0.28
PPFIA1-212ENST00000528853 HNRNPUL2Q1KMD3 747 aaKnown RBP16.8■□□□□ 0.28
PPFIA1-212ENST00000528853 TRHP20396 242 aaPredicted RBP16.78■□□□□ 0.28
PPFIA1-212ENST00000528853 ZNF219Q9P2Y4 722 aaPredicted RBP16.76■□□□□ 0.27
PPFIA1-212ENST00000528853 SAMD1Q6SPF0 538 aaPredicted RBP16.69■□□□□ 0.26
PPFIA1-212ENST00000528853 ABCB7O75027 752 aa16.68■□□□□ 0.26
PPFIA1-212ENST00000528853 POTEHQ6S545 545 aa16.53■□□□□ 0.24
PPFIA1-212ENST00000528853 MYCNP04198 464 aaPredicted RBP16.5■□□□□ 0.23
PPFIA1-212ENST00000528853 SLC4A1APQ9BWU0 796 aaKnown RBP16.4■□□□□ 0.22
PPFIA1-212ENST00000528853 POLA2Q14181 598 aa16.3■□□□□ 0.2
PPFIA1-212ENST00000528853 RBM42Q9BTD8 480 aaKnown RBP16.26■□□□□ 0.19
PPFIA1-212ENST00000528853 FOXD4L1Q9NU39 408 aa16.25■□□□□ 0.19
PPFIA1-212ENST00000528853 ATF5Q9Y2D1 282 aaPredicted RBP16.12■□□□□ 0.17
PPFIA1-212ENST00000528853 ZBTB12Q9Y330 459 aaPredicted RBP15.98■□□□□ 0.15
PPFIA1-212ENST00000528853 CHRDL2Q6WN34 429 aa15.96■□□□□ 0.15
PPFIA1-212ENST00000528853 ZBTB22O15209 634 aa15.95■□□□□ 0.14
PPFIA1-212ENST00000528853 AKT1S1Q96B36 256 aa15.86■□□□□ 0.13
PPFIA1-212ENST00000528853 OSCARQ8IYS5 282 aa15.79■□□□□ 0.12
PPFIA1-212ENST00000528853 ATXN8OSP0DMR3 200 aa15.77■□□□□ 0.12
PPFIA1-212ENST00000528853 REM2Q8IYK8 340 aaPredicted RBP15.7■□□□□ 0.1
PPFIA1-212ENST00000528853 PIP4P2Q8N4L2 257 aa15.56■□□□□ 0.08
PPFIA1-212ENST00000528853 PITPNM1O00562 1244 aa15.54■□□□□ 0.08
PPFIA1-212ENST00000528853 FBLN2P98095 1184 aa15.52■□□□□ 0.08
PPFIA1-212ENST00000528853 SPDYE2BA6NHP3 402 aa15.47■□□□□ 0.07
PPFIA1-212ENST00000528853 SPDYE6P0CI01 402 aa15.47■□□□□ 0.07
PPFIA1-212ENST00000528853 SPDYE2Q495Y8 402 aa15.47■□□□□ 0.07
PPFIA1-212ENST00000528853 FXR2P51116 673 aaKnown RBP eCLIP15.44■□□□□ 0.06
PPFIA1-212ENST00000528853 SP7Q8TDD2 431 aaPredicted RBP15.43■□□□□ 0.06
PPFIA1-212ENST00000528853 MKRN4PQ13434 485 aaPredicted RBP15.37■□□□□ 0.05
PPFIA1-212ENST00000528853 HAX1O00165 279 aa15.3■□□□□ 0.04
PPFIA1-212ENST00000528853 CSRNP3Q8WYN3 585 aa15.28■□□□□ 0.04
PPFIA1-212ENST00000528853 EHMT2Q96KQ7 1210 aa15.28■□□□□ 0.04
PPFIA1-212ENST00000528853 ZNF692Q9BU19 519 aaPredicted RBP15.25■□□□□ 0.03
PPFIA1-212ENST00000528853 SSUH2Q9Y2M2 353 aa15.24■□□□□ 0.03
PPFIA1-212ENST00000528853 SPDYE1Q8NFV5 336 aaPredicted RBP15.23■□□□□ 0.03
PPFIA1-212ENST00000528853 CLEC11AQ9Y240 323 aa15.2■□□□□ 0.02
PPFIA1-212ENST00000528853 PRKAR2AP13861 404 aaKnown RBP15.13■□□□□ 0.01
PPFIA1-212ENST00000528853 EVX2Q03828 476 aa15.08■□□□□ 0
PPFIA1-212ENST00000528853 PABPN1Q86U42 306 aaKnown RBP eCLIP15.02■□□□□ -0
PPFIA1-212ENST00000528853 C19orf67A6NJJ6 358 aa14.95□□□□□ -0.02
PPFIA1-212ENST00000528853 PRR29P0C7W0 189 aa14.94□□□□□ -0.02
PPFIA1-212ENST00000528853 CHADLQ6NUI6 762 aa14.92□□□□□ -0.02
PPFIA1-212ENST00000528853 GABBR2O75899 941 aa14.76□□□□□ -0.05
PPFIA1-212ENST00000528853 FARP1Q9Y4F1 1045 aaPredicted RBP14.7□□□□□ -0.06
PPFIA1-212ENST00000528853 CD44P16070 742 aaKnown RBP14.64□□□□□ -0.07
PPFIA1-212ENST00000528853 STAG3Q9UJ98 1225 aa14.59□□□□□ -0.07
PPFIA1-212ENST00000528853 SPDYE4A6NLX3 237 aa14.58□□□□□ -0.08
PPFIA1-212ENST00000528853 CREBZFQ9NS37 354 aa14.53□□□□□ -0.08
PPFIA1-212ENST00000528853 CLCN6P51797 869 aa14.49□□□□□ -0.09
PPFIA1-212ENST00000528853 LHX8Q68G74 356 aa14.46□□□□□ -0.09
PPFIA1-212ENST00000528853 POTEIP0CG38 1075 aa14.44□□□□□ -0.1
PPFIA1-212ENST00000528853 ZNF579Q8NAF0 562 aaKnown RBP14.42□□□□□ -0.1
PPFIA1-212ENST00000528853 ZRANB1Q9UGI0 708 aa14.41□□□□□ -0.1
PPFIA1-212ENST00000528853 DCBLD2Q96PD2 775 aa14.33□□□□□ -0.12
PPFIA1-212ENST00000528853 PAK3O75914 559 aaPredicted RBP14.27□□□□□ -0.13
PPFIA1-212ENST00000528853 NPM1P06748 294 aaKnown RBP eCLIP14.27□□□□□ -0.13
PPFIA1-212ENST00000528853 MNX1P50219 401 aaPredicted RBP14.26□□□□□ -0.13
PPFIA1-212ENST00000528853 GALR2O43603 387 aaPredicted RBP14.24□□□□□ -0.13
PPFIA1-212ENST00000528853 PROM2Q8N271 834 aa14.22□□□□□ -0.13
PPFIA1-212ENST00000528853 PHF12Q96QT6 1004 aa14.2□□□□□ -0.14
PPFIA1-212ENST00000528853 MS4A3Q96HJ5 214 aa14.01□□□□□ -0.17
PPFIA1-212ENST00000528853 TSPYL2Q9H2G4 693 aaPredicted RBP13.99□□□□□ -0.17
PPFIA1-212ENST00000528853 PELP1Q8IZL8 1130 aaKnown RBP13.98□□□□□ -0.17
PPFIA1-212ENST00000528853 POTEB2H3BUK9 544 aa13.96□□□□□ -0.17
PPFIA1-212ENST00000528853 PLEKHG5O94827 1062 aa13.95□□□□□ -0.18
PPFIA1-212ENST00000528853 ASTLQ6HA08 431 aaPredicted RBP13.95□□□□□ -0.18
PPFIA1-212ENST00000528853 CCDC61Q9Y6R9 512 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 416 ms