RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CHIC1Q5VXU3 224 aa19.69■□□□□ 0.74
CD44-220ENST00000525688 AEBP2Q6ZN18 517 aaPredicted RBP19.67■□□□□ 0.74
CD44-220ENST00000525688 PHF23Q9BUL5 403 aaPredicted RBP17.36■□□□□ 0.37
CD44-220ENST00000525688 SENP3Q9H4L4 574 aaPredicted RBP16.64■□□□□ 0.25
CD44-220ENST00000525688 PLPPR3Q6T4P5 718 aa16.19■□□□□ 0.18
CD44-220ENST00000525688 FOXD1Q16676 465 aa15.37■□□□□ 0.05
CD44-220ENST00000525688 PPP6R1Q9UPN7 881 aa15.15■□□□□ 0.02
CD44-220ENST00000525688 ADRA2BP18089 450 aa15.14■□□□□ 0.01
CD44-220ENST00000525688 PIAS4Q8N2W9 510 aaPredicted RBP14.58□□□□□ -0.08
CD44-220ENST00000525688 KCNA4P22459 653 aa14.49□□□□□ -0.09
CD44-220ENST00000525688 PPP4R3CPQ6ZMV5 832 aa14.31□□□□□ -0.12
CD44-220ENST00000525688 NCBP3Q53F19 620 aaKnown RBP14.08□□□□□ -0.16
CD44-220ENST00000525688 MSH5O43196 834 aa14.01□□□□□ -0.17
CD44-220ENST00000525688 EHMT2Q96KQ7 1210 aa13.95□□□□□ -0.18
CD44-220ENST00000525688 SCAF1Q9H7N4 1312 aaKnown RBP13.89□□□□□ -0.19
CD44-220ENST00000525688 SLC4A1APQ9BWU0 796 aaKnown RBP13.88□□□□□ -0.19
CD44-220ENST00000525688 NPM3O75607 178 aaKnown RBP13.87□□□□□ -0.19
CD44-220ENST00000525688 CNKSR2Q8WXI2 1034 aa13.83□□□□□ -0.2
CD44-220ENST00000525688 CSRNP3Q8WYN3 585 aa13.67□□□□□ -0.22
CD44-220ENST00000525688 MAPK8IP2Q13387 824 aaPredicted RBP13.59□□□□□ -0.23
CD44-220ENST00000525688 DNAJC5BQ9UF47 199 aa13.53□□□□□ -0.24
CD44-220ENST00000525688 RNF216Q9NWF9 866 aaPredicted RBP13.46□□□□□ -0.25
CD44-220ENST00000525688 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
CD44-220ENST00000525688 ZBTB22O15209 634 aa13.35□□□□□ -0.27
CD44-220ENST00000525688 HOXD11P31277 338 aaPredicted RBP13.29□□□□□ -0.28
CD44-220ENST00000525688 FOXD4L1Q9NU39 408 aa13.22□□□□□ -0.29
CD44-220ENST00000525688 SLC4A2P04920 1241 aa12.99□□□□□ -0.33
CD44-220ENST00000525688 MYCNP04198 464 aaPredicted RBP12.82□□□□□ -0.36
CD44-220ENST00000525688 ATXN8OSP0DMR3 200 aa12.77□□□□□ -0.37
CD44-220ENST00000525688 DCAF8L1A6NGE4 600 aa12.65□□□□□ -0.38
CD44-220ENST00000525688 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.59□□□□□ -0.39
CD44-220ENST00000525688 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.5□□□□□ -0.41
CD44-220ENST00000525688 HNRNPUL2Q1KMD3 747 aaKnown RBP12.5□□□□□ -0.41
CD44-220ENST00000525688 U3KPZ7 1027 aaPredicted RBP12.47□□□□□ -0.41
CD44-220ENST00000525688 SAMD1Q6SPF0 538 aaPredicted RBP12.46□□□□□ -0.41
CD44-220ENST00000525688 ATF5Q9Y2D1 282 aaPredicted RBP12.41□□□□□ -0.42
CD44-220ENST00000525688 FKBP8Q14318 412 aa12.28□□□□□ -0.44
CD44-220ENST00000525688 APLP2Q06481 763 aa12.25□□□□□ -0.45
CD44-220ENST00000525688 ZNF219Q9P2Y4 722 aaPredicted RBP12.18□□□□□ -0.46
CD44-220ENST00000525688 RNF39Q9H2S5 420 aa12.05□□□□□ -0.48
CD44-220ENST00000525688 AMER1Q5JTC6 1135 aaPredicted RBP12.04□□□□□ -0.48
CD44-220ENST00000525688 RTN4Q9NQC3 1192 aaKnown RBP12□□□□□ -0.49
CD44-220ENST00000525688 SPINK5Q9NQ38 1064 aaPredicted RBP11.96□□□□□ -0.49
CD44-220ENST00000525688 C1QBPQ07021 282 aaKnown RBP11.94□□□□□ -0.5
CD44-220ENST00000525688 TRHP20396 242 aaPredicted RBP11.92□□□□□ -0.5
CD44-220ENST00000525688 MKRN4PQ13434 485 aaPredicted RBP11.91□□□□□ -0.5
CD44-220ENST00000525688 POTEDQ86YR6 584 aa11.91□□□□□ -0.5
CD44-220ENST00000525688 POLA2Q14181 598 aa11.87□□□□□ -0.51
CD44-220ENST00000525688 SPDYE4A6NLX3 237 aa11.86□□□□□ -0.51
CD44-220ENST00000525688 CAPN15O75808 1086 aa11.86□□□□□ -0.51
CD44-220ENST00000525688 FBLN2P98095 1184 aa11.86□□□□□ -0.51
CD44-220ENST00000525688 PROM2Q8N271 834 aa11.8□□□□□ -0.52
CD44-220ENST00000525688 FBXO3Q9UK99 471 aa11.77□□□□□ -0.53
CD44-220ENST00000525688 ZBTB12Q9Y330 459 aaPredicted RBP11.75□□□□□ -0.53
CD44-220ENST00000525688 ABCB7O75027 752 aa11.67□□□□□ -0.54
CD44-220ENST00000525688 DSG3P32926 999 aa11.61□□□□□ -0.55
CD44-220ENST00000525688 SLC24A1O60721 1099 aa11.59□□□□□ -0.55
CD44-220ENST00000525688 VASPP50552 380 aaPredicted RBP11.58□□□□□ -0.56
CD44-220ENST00000525688 SPDYE2BA6NHP3 402 aa11.46□□□□□ -0.57
CD44-220ENST00000525688 SPDYE6P0CI01 402 aa11.46□□□□□ -0.57
CD44-220ENST00000525688 SPDYE2Q495Y8 402 aa11.46□□□□□ -0.57
CD44-220ENST00000525688 IFNLR1Q8IU57 520 aaPredicted RBP11.46□□□□□ -0.57
CD44-220ENST00000525688 ZNF692Q9BU19 519 aaPredicted RBP11.46□□□□□ -0.57
CD44-220ENST00000525688 SSUH2Q9Y2M2 353 aa11.44□□□□□ -0.58
CD44-220ENST00000525688 OSCARQ8IYS5 282 aa11.42□□□□□ -0.58
CD44-220ENST00000525688 STAG3Q9UJ98 1225 aa11.37□□□□□ -0.59
CD44-220ENST00000525688 CACNB1Q02641 598 aaPredicted RBP11.34□□□□□ -0.59
CD44-220ENST00000525688 PABPN1Q86U42 306 aaKnown RBP eCLIP11.31□□□□□ -0.6
CD44-220ENST00000525688 PKD2Q13563 968 aa11.26□□□□□ -0.61
CD44-220ENST00000525688 SPOCK2Q92563 424 aa11.24□□□□□ -0.61
CD44-220ENST00000525688 KLHL34Q8N239 644 aa11.22□□□□□ -0.61
CD44-220ENST00000525688 PLCD3Q8N3E9 789 aa11.19□□□□□ -0.62
CD44-220ENST00000525688 MIER1Q8N108 512 aa11.17□□□□□ -0.62
CD44-220ENST00000525688 PLCB2Q00722 1185 aa11.13□□□□□ -0.63
CD44-220ENST00000525688 ZBTB47Q9UFB7 747 aaPredicted RBP11.1□□□□□ -0.63
CD44-220ENST00000525688 PLEKHG5O94827 1062 aa11.09□□□□□ -0.63
CD44-220ENST00000525688 DCAF8L2P0C7V8 631 aa11.08□□□□□ -0.64
CD44-220ENST00000525688 ECM2O94769 699 aaPredicted RBP11.07□□□□□ -0.64
CD44-220ENST00000525688 RBM42Q9BTD8 480 aaKnown RBP11.06□□□□□ -0.64
CD44-220ENST00000525688 AKT1S1Q96B36 256 aa11.04□□□□□ -0.64
CD44-220ENST00000525688 SPDYE1Q8NFV5 336 aaPredicted RBP11□□□□□ -0.65
CD44-220ENST00000525688 RGL2O15211 777 aa10.96□□□□□ -0.65
CD44-220ENST00000525688 BBXQ8WY36 941 aaPredicted RBP10.96□□□□□ -0.65
CD44-220ENST00000525688 TRIM41Q8WV44 630 aa10.95□□□□□ -0.66
CD44-220ENST00000525688 CIZ1Q9ULV3 898 aaPredicted RBP10.94□□□□□ -0.66
CD44-220ENST00000525688 NPM1P06748 294 aaKnown RBP eCLIP10.92□□□□□ -0.66
CD44-220ENST00000525688 HAP1P54257 671 aaPredicted RBP10.9□□□□□ -0.66
CD44-220ENST00000525688 REM2Q8IYK8 340 aaPredicted RBP10.9□□□□□ -0.66
CD44-220ENST00000525688 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.9□□□□□ -0.66
CD44-220ENST00000525688 NUBP1P53384 320 aa10.88□□□□□ -0.67
CD44-220ENST00000525688 GSE1Q14687 1217 aa10.88□□□□□ -0.67
CD44-220ENST00000525688 PRR29P0C7W0 189 aa10.87□□□□□ -0.67
CD44-220ENST00000525688 CREBZFQ9NS37 354 aa10.86□□□□□ -0.67
CD44-220ENST00000525688 CLEC11AQ9Y240 323 aa10.86□□□□□ -0.67
CD44-220ENST00000525688 MNX1P50219 401 aaPredicted RBP10.84□□□□□ -0.67
CD44-220ENST00000525688 VSIG10Q8N0Z9 540 aa10.83□□□□□ -0.68
CD44-220ENST00000525688 CHGAP10645 457 aaKnown RBP10.78□□□□□ -0.68
CD44-220ENST00000525688 PAXIP1Q6ZW49 1069 aaPredicted RBP10.78□□□□□ -0.68
CD44-220ENST00000525688 DCAF8Q5TAQ9 597 aa10.77□□□□□ -0.69
CD44-220ENST00000525688 PITPNM1O00562 1244 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms