RNA–Protein interactions for RNA: ENST00000524646.1

PKP3-202, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 312 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-202ENST00000524646 NISCHQ9Y2I1 1504 aa18.85■□□□□ 0.61
PKP3-202ENST00000524646 CCDC180Q9P1Z9 1646 aa16.32■□□□□ 0.2
PKP3-202ENST00000524646 ZCCHC6Q5VYS8 1495 aaKnown RBP16.03■□□□□ 0.16
PKP3-202ENST00000524646 SHROOM4Q9ULL8 1493 aa15.75■□□□□ 0.11
PKP3-202ENST00000524646 DCAF1Q9Y4B6 1507 aa15.62■□□□□ 0.09
PKP3-202ENST00000524646 SUPT5HO00267 1087 aaKnown RBP15.36■□□□□ 0.05
PKP3-202ENST00000524646 ABCC9O60706 1549 aa15.22■□□□□ 0.03
PKP3-202ENST00000524646 MYO15BQ96JP2 1530 aa15.17■□□□□ 0.02
PKP3-202ENST00000524646 DCAF8L2P0C7V8 631 aa15.13■□□□□ 0.01
PKP3-202ENST00000524646 CHIC1Q5VXU3 224 aa15.05■□□□□ -0
PKP3-202ENST00000524646 SCRIBQ14160 1630 aa15.04■□□□□ -0
PKP3-202ENST00000524646 NACADO15069 1562 aa14.92□□□□□ -0.02
PKP3-202ENST00000524646 RB1CC1Q8TDY2 1594 aa14.81□□□□□ -0.04
PKP3-202ENST00000524646 RSF1Q96T23 1441 aaPredicted RBP14.81□□□□□ -0.04
PKP3-202ENST00000524646 BAZ1AQ9NRL2 1556 aaPredicted RBP14.64□□□□□ -0.07
PKP3-202ENST00000524646 HRCP23327 699 aa14.62□□□□□ -0.07
PKP3-202ENST00000524646 MROH2BQ7Z745 1585 aa14.6□□□□□ -0.07
PKP3-202ENST00000524646 UNC13AQ9UPW8 1703 aa14.59□□□□□ -0.07
PKP3-202ENST00000524646 WIZO95785 1651 aa14.58□□□□□ -0.07
PKP3-202ENST00000524646 EIF4G1Q04637 1599 aaKnown RBP14.58□□□□□ -0.08
PKP3-202ENST00000524646 CECR2Q9BXF3 1484 aa14.57□□□□□ -0.08
PKP3-202ENST00000524646 PCGF6Q9BYE7 350 aa14.47□□□□□ -0.09
PKP3-202ENST00000524646 SMARCA4P51532 1647 aa14.45□□□□□ -0.1
PKP3-202ENST00000524646 LOC105371045A0A1W2PR82 267 aa14.45□□□□□ -0.1
PKP3-202ENST00000524646 TOP2AP11388 1531 aaKnown RBP14.45□□□□□ -0.1
PKP3-202ENST00000524646 TRIM41Q8WV44 630 aa14.38□□□□□ -0.11
PKP3-202ENST00000524646 SMARCA2P51531 1590 aa14.34□□□□□ -0.11
PKP3-202ENST00000524646 TRIM26Q12899 539 aaPredicted RBP14.32□□□□□ -0.12
PKP3-202ENST00000524646 BICRAQ9NZM4 1560 aa14.24□□□□□ -0.13
PKP3-202ENST00000524646 PEG3Q9GZU2 1588 aa14.22□□□□□ -0.13
PKP3-202ENST00000524646 CCDC88BA6NC98 1476 aa14.2□□□□□ -0.14
PKP3-202ENST00000524646 ABCC8Q09428 1581 aa14.19□□□□□ -0.14
PKP3-202ENST00000524646 PPARGC1BQ86YN6 1023 aaKnown RBP14.16□□□□□ -0.14
PKP3-202ENST00000524646 FAM9AQ8IZU1 332 aaPredicted RBP14.16□□□□□ -0.14
PKP3-202ENST00000524646 ZEB1P37275 1124 aaPredicted RBP14.09□□□□□ -0.15
PKP3-202ENST00000524646 EEA1Q15075 1411 aa14.08□□□□□ -0.15
PKP3-202ENST00000524646 WRNQ14191 1432 aaPredicted RBP eCLIP14.03□□□□□ -0.16
PKP3-202ENST00000524646 KIF21BO75037 1637 aa13.99□□□□□ -0.17
PKP3-202ENST00000524646 SYNJ1O43426 1573 aa13.98□□□□□ -0.17
PKP3-202ENST00000524646 CEP162Q5TB80 1403 aa13.98□□□□□ -0.17
PKP3-202ENST00000524646 GOLGA3Q08378 1498 aa13.95□□□□□ -0.18
PKP3-202ENST00000524646 ATAD2BQ9ULI0 1458 aa13.94□□□□□ -0.18
PKP3-202ENST00000524646 SOGA1O94964 1423 aa13.94□□□□□ -0.18
PKP3-202ENST00000524646 EHMT2Q96KQ7 1210 aa13.94□□□□□ -0.18
PKP3-202ENST00000524646 TNIKQ9UKE5 1360 aa13.94□□□□□ -0.18
PKP3-202ENST00000524646 BAZ1BQ9UIG0 1483 aaKnown RBP13.93□□□□□ -0.18
PKP3-202ENST00000524646 BIVM-ERCC5R4GMW8 1640 aa13.9□□□□□ -0.19
PKP3-202ENST00000524646 RUSC2Q8N2Y8 1516 aa13.88□□□□□ -0.19
PKP3-202ENST00000524646 CEP164Q9UPV0 1460 aa13.87□□□□□ -0.19
PKP3-202ENST00000524646 TOP2BQ02880 1626 aa13.86□□□□□ -0.19
PKP3-202ENST00000524646 PRDM2Q13029 1718 aa13.85□□□□□ -0.19
PKP3-202ENST00000524646 PABPN1Q86U42 306 aaKnown RBP eCLIP13.85□□□□□ -0.19
PKP3-202ENST00000524646 HMGXB3Q12766 1538 aa13.85□□□□□ -0.19
PKP3-202ENST00000524646 CSRNP3Q8WYN3 585 aa13.8□□□□□ -0.2
PKP3-202ENST00000524646 ERICH3Q5RHP9 1530 aa13.74□□□□□ -0.21
PKP3-202ENST00000524646 CLIP1P30622 1438 aa13.7□□□□□ -0.22
PKP3-202ENST00000524646 VPS8Q8N3P4 1428 aa13.7□□□□□ -0.22
PKP3-202ENST00000524646 UBTFP17480 764 aaKnown RBP13.68□□□□□ -0.22
PKP3-202ENST00000524646 NCAPD3P42695 1498 aa13.67□□□□□ -0.22
PKP3-202ENST00000524646 RAPGEF2Q9Y4G8 1499 aa13.67□□□□□ -0.22
PKP3-202ENST00000524646 CCER1Q8TC90 406 aaPredicted RBP13.66□□□□□ -0.22
PKP3-202ENST00000524646 CUX1P39880 1505 aa13.64□□□□□ -0.23
PKP3-202ENST00000524646 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.64□□□□□ -0.23
PKP3-202ENST00000524646 PRXQ9BXM0 1461 aa13.61□□□□□ -0.23
PKP3-202ENST00000524646 CFTRP13569 1480 aa13.57□□□□□ -0.24
PKP3-202ENST00000524646 ARAP1Q96P48 1450 aa13.56□□□□□ -0.24
PKP3-202ENST00000524646 TTBK1Q5TCY1 1321 aaPredicted RBP13.56□□□□□ -0.24
PKP3-202ENST00000524646 KIF27Q86VH2 1401 aa13.51□□□□□ -0.25
PKP3-202ENST00000524646 CFAP43Q8NDM7 1665 aa13.43□□□□□ -0.26
PKP3-202ENST00000524646 APLP2Q06481 763 aa13.42□□□□□ -0.26
PKP3-202ENST00000524646 SCAF1Q9H7N4 1312 aaKnown RBP13.41□□□□□ -0.26
PKP3-202ENST00000524646 ARHGAP35Q9NRY4 1499 aa13.4□□□□□ -0.26
PKP3-202ENST00000524646 CC2D2AQ9P2K1 1620 aa13.39□□□□□ -0.27
PKP3-202ENST00000524646 DIEXFQ68CQ4 756 aaKnown RBP13.39□□□□□ -0.27
PKP3-202ENST00000524646 RRBP1Q9P2E9 1410 aaKnown RBP13.39□□□□□ -0.27
PKP3-202ENST00000524646 CUX2O14529 1486 aa13.37□□□□□ -0.27
PKP3-202ENST00000524646 FGD5Q6ZNL6 1462 aa13.37□□□□□ -0.27
PKP3-202ENST00000524646 MAP3K1Q13233 1512 aa13.37□□□□□ -0.27
PKP3-202ENST00000524646 CTTNBP2Q8WZ74 1663 aa13.37□□□□□ -0.27
PKP3-202ENST00000524646 TIAM1Q13009 1591 aa13.37□□□□□ -0.27
PKP3-202ENST00000524646 DNMBPQ6XZF7 1577 aa13.36□□□□□ -0.27
PKP3-202ENST00000524646 HNRNPUL2Q1KMD3 747 aaKnown RBP13.35□□□□□ -0.27
PKP3-202ENST00000524646 WDR97A6NE52 1622 aa13.35□□□□□ -0.27
PKP3-202ENST00000524646 CUL7Q14999 1698 aa13.34□□□□□ -0.27
PKP3-202ENST00000524646 ZNF316A6NFI3 1004 aaPredicted RBP13.34□□□□□ -0.27
PKP3-202ENST00000524646 CADPSQ9ULU8 1353 aa13.33□□□□□ -0.27
PKP3-202ENST00000524646 ACIN1Q9UKV3 1341 aaKnown RBP13.33□□□□□ -0.28
PKP3-202ENST00000524646 PCF11O94913 1555 aaKnown RBP13.31□□□□□ -0.28
PKP3-202ENST00000524646 CLSPNQ9HAW4 1339 aa13.31□□□□□ -0.28
PKP3-202ENST00000524646 CENPBP07199 599 aaPredicted RBP13.3□□□□□ -0.28
PKP3-202ENST00000524646 EFCAB5A4FU69 1503 aa13.29□□□□□ -0.28
PKP3-202ENST00000524646 PELP1Q8IZL8 1130 aaKnown RBP13.28□□□□□ -0.28
PKP3-202ENST00000524646 DHX57Q6P158 1386 aaKnown RBP13.28□□□□□ -0.28
PKP3-202ENST00000524646 FANCD2Q9BXW9 1451 aa13.28□□□□□ -0.28
PKP3-202ENST00000524646 RANGAP1P46060 587 aaPredicted RBP13.27□□□□□ -0.29
PKP3-202ENST00000524646 ABCA10Q8WWZ4 1543 aa13.26□□□□□ -0.29
PKP3-202ENST00000524646 IGF1RP08069 1367 aa13.25□□□□□ -0.29
PKP3-202ENST00000524646 NEUROD1Q13562 356 aa13.25□□□□□ -0.29
PKP3-202ENST00000524646 KIF21AQ7Z4S6 1674 aa13.24□□□□□ -0.29
PKP3-202ENST00000524646 CCNB3Q8WWL7 1395 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms