RNA–Protein interactions for RNA: ENST00000523540.1

PCM1-219, Transcript of pericentriolar material 1, humanhuman

TSL 2

Gene PCM1, Length 640 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-219ENST00000523540 AEBP2Q6ZN18 517 aaPredicted RBP28.9■■■□□ 2.22
PCM1-219ENST00000523540 CHIC1Q5VXU3 224 aa27.2■■□□□ 1.94
PCM1-219ENST00000523540 SENP3Q9H4L4 574 aaPredicted RBP24.64■■□□□ 1.54
PCM1-219ENST00000523540 PHF23Q9BUL5 403 aaPredicted RBP24.29■■□□□ 1.48
PCM1-219ENST00000523540 FOXD1Q16676 465 aa23.02■■□□□ 1.28
PCM1-219ENST00000523540 MSH5O43196 834 aa21.62■■□□□ 1.05
PCM1-219ENST00000523540 PLPPR3Q6T4P5 718 aa21.58■■□□□ 1.05
PCM1-219ENST00000523540 POTEDQ86YR6 584 aa21.53■■□□□ 1.04
PCM1-219ENST00000523540 PIAS4Q8N2W9 510 aaPredicted RBP21.4■■□□□ 1.02
PCM1-219ENST00000523540 PPP6R1Q9UPN7 881 aa21.34■■□□□ 1.01
PCM1-219ENST00000523540 ADRA2BP18089 450 aa21.22■□□□□ 0.99
PCM1-219ENST00000523540 MAPK8IP2Q13387 824 aaPredicted RBP19.57■□□□□ 0.72
PCM1-219ENST00000523540 DMRT2Q9Y5R5 561 aa19.54■□□□□ 0.72
PCM1-219ENST00000523540 SCAF1Q9H7N4 1312 aaKnown RBP19.39■□□□□ 0.69
PCM1-219ENST00000523540 PPP4R3CPQ6ZMV5 832 aa18.88■□□□□ 0.61
PCM1-219ENST00000523540 HOXD11P31277 338 aaPredicted RBP18.75■□□□□ 0.59
PCM1-219ENST00000523540 CACNB1Q02641 598 aaPredicted RBP18.64■□□□□ 0.57
PCM1-219ENST00000523540 CNKSR2Q8WXI2 1034 aa18.6■□□□□ 0.57
PCM1-219ENST00000523540 DCAF8L1A6NGE4 600 aa18.59■□□□□ 0.57
PCM1-219ENST00000523540 RNF216Q9NWF9 866 aaPredicted RBP18.51■□□□□ 0.55
PCM1-219ENST00000523540 RNF39Q9H2S5 420 aa18.45■□□□□ 0.54
PCM1-219ENST00000523540 DNAJC5BQ9UF47 199 aa18.19■□□□□ 0.5
PCM1-219ENST00000523540 C1QBPQ07021 282 aaKnown RBP18.15■□□□□ 0.5
PCM1-219ENST00000523540 NCBP3Q53F19 620 aaKnown RBP18.04■□□□□ 0.48
PCM1-219ENST00000523540 NPM3O75607 178 aaKnown RBP17.84■□□□□ 0.45
PCM1-219ENST00000523540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.74■□□□□ 0.435e-9■□□□□ 10.8
PCM1-219ENST00000523540 U3KPZ7 1027 aaPredicted RBP17.44■□□□□ 0.38
PCM1-219ENST00000523540 KCNA4P22459 653 aa17.27■□□□□ 0.36
PCM1-219ENST00000523540 SPINK5Q9NQ38 1064 aaPredicted RBP17.22■□□□□ 0.35
PCM1-219ENST00000523540 DSG3P32926 999 aa17.19■□□□□ 0.34
PCM1-219ENST00000523540 CAPN15O75808 1086 aa17.14■□□□□ 0.33
PCM1-219ENST00000523540 SLC4A2P04920 1241 aa17.13■□□□□ 0.33
PCM1-219ENST00000523540 APLP2Q06481 763 aa16.85■□□□□ 0.29
PCM1-219ENST00000523540 ZNF219Q9P2Y4 722 aaPredicted RBP16.82■□□□□ 0.28
PCM1-219ENST00000523540 TRHP20396 242 aaPredicted RBP16.81■□□□□ 0.28
PCM1-219ENST00000523540 POTEHQ6S545 545 aa16.8■□□□□ 0.28
PCM1-219ENST00000523540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.79■□□□□ 0.28
PCM1-219ENST00000523540 HNRNPUL2Q1KMD3 747 aaKnown RBP16.79■□□□□ 0.28
PCM1-219ENST00000523540 ABCB7O75027 752 aa16.74■□□□□ 0.27
PCM1-219ENST00000523540 SAMD1Q6SPF0 538 aaPredicted RBP16.7■□□□□ 0.26
PCM1-219ENST00000523540 MYCNP04198 464 aaPredicted RBP16.49■□□□□ 0.23
PCM1-219ENST00000523540 RBM42Q9BTD8 480 aaKnown RBP16.37■□□□□ 0.21
PCM1-219ENST00000523540 POLA2Q14181 598 aa16.33■□□□□ 0.2
PCM1-219ENST00000523540 SLC4A1APQ9BWU0 796 aaKnown RBP16.22■□□□□ 0.19
PCM1-219ENST00000523540 FOXD4L1Q9NU39 408 aa16.2■□□□□ 0.18
PCM1-219ENST00000523540 ATF5Q9Y2D1 282 aaPredicted RBP16.15■□□□□ 0.18
PCM1-219ENST00000523540 CHRDL2Q6WN34 429 aa16.11■□□□□ 0.17
PCM1-219ENST00000523540 ZBTB12Q9Y330 459 aaPredicted RBP15.99■□□□□ 0.15
PCM1-219ENST00000523540 AKT1S1Q96B36 256 aa15.97■□□□□ 0.15
PCM1-219ENST00000523540 ZBTB22O15209 634 aa15.9■□□□□ 0.14
PCM1-219ENST00000523540 OSCARQ8IYS5 282 aa15.83■□□□□ 0.12
PCM1-219ENST00000523540 REM2Q8IYK8 340 aaPredicted RBP15.81■□□□□ 0.12
PCM1-219ENST00000523540 ATXN8OSP0DMR3 200 aa15.74■□□□□ 0.11
PCM1-219ENST00000523540 PIP4P2Q8N4L2 257 aa15.69■□□□□ 0.1
PCM1-219ENST00000523540 PITPNM1O00562 1244 aa15.64■□□□□ 0.09
PCM1-219ENST00000523540 SP7Q8TDD2 431 aaPredicted RBP15.64■□□□□ 0.09
PCM1-219ENST00000523540 FXR2P51116 673 aaKnown RBP eCLIP15.6■□□□□ 0.092e-14■■■□□ 15.1
PCM1-219ENST00000523540 EHMT2Q96KQ7 1210 aa15.58■□□□□ 0.08
PCM1-219ENST00000523540 SPDYE2BA6NHP3 402 aa15.5■□□□□ 0.07
PCM1-219ENST00000523540 SPDYE6P0CI01 402 aa15.5■□□□□ 0.07
PCM1-219ENST00000523540 SPDYE2Q495Y8 402 aa15.5■□□□□ 0.07
PCM1-219ENST00000523540 FBLN2P98095 1184 aa15.46■□□□□ 0.07
PCM1-219ENST00000523540 CSRNP3Q8WYN3 585 aa15.44■□□□□ 0.06
PCM1-219ENST00000523540 MKRN4PQ13434 485 aaPredicted RBP15.41■□□□□ 0.06
PCM1-219ENST00000523540 HAX1O00165 279 aa15.4■□□□□ 0.06
PCM1-219ENST00000523540 SSUH2Q9Y2M2 353 aa15.31■□□□□ 0.04
PCM1-219ENST00000523540 EVX2Q03828 476 aa15.28■□□□□ 0.04
PCM1-219ENST00000523540 SPDYE1Q8NFV5 336 aaPredicted RBP15.27■□□□□ 0.04
PCM1-219ENST00000523540 ZNF692Q9BU19 519 aaPredicted RBP15.23■□□□□ 0.03
PCM1-219ENST00000523540 PRKAR2AP13861 404 aaKnown RBP15.2■□□□□ 0.02
PCM1-219ENST00000523540 CLEC11AQ9Y240 323 aa15.19■□□□□ 0.02
PCM1-219ENST00000523540 C19orf67A6NJJ6 358 aa15.1■□□□□ 0.01
PCM1-219ENST00000523540 PABPN1Q86U42 306 aaKnown RBP eCLIP15.01□□□□□ -0.01
PCM1-219ENST00000523540 CHADLQ6NUI6 762 aa14.98□□□□□ -0.01
PCM1-219ENST00000523540 PRR29P0C7W0 189 aa14.94□□□□□ -0.02
PCM1-219ENST00000523540 GABBR2O75899 941 aa14.91□□□□□ -0.02
PCM1-219ENST00000523540 FARP1Q9Y4F1 1045 aaPredicted RBP14.76□□□□□ -0.05
PCM1-219ENST00000523540 CD44P16070 742 aaKnown RBP14.71□□□□□ -0.05
PCM1-219ENST00000523540 LHX8Q68G74 356 aa14.65□□□□□ -0.06
PCM1-219ENST00000523540 POTEIP0CG38 1075 aa14.63□□□□□ -0.07
PCM1-219ENST00000523540 CLCN6P51797 869 aa14.61□□□□□ -0.07
PCM1-219ENST00000523540 CREBZFQ9NS37 354 aa14.58□□□□□ -0.08
PCM1-219ENST00000523540 STAG3Q9UJ98 1225 aa14.55□□□□□ -0.08
PCM1-219ENST00000523540 ZNF579Q8NAF0 562 aaKnown RBP14.52□□□□□ -0.09
PCM1-219ENST00000523540 SPDYE4A6NLX3 237 aa14.5□□□□□ -0.09
PCM1-219ENST00000523540 ZRANB1Q9UGI0 708 aa14.45□□□□□ -0.1
PCM1-219ENST00000523540 DCBLD2Q96PD2 775 aa14.38□□□□□ -0.11
PCM1-219ENST00000523540 GALR2O43603 387 aaPredicted RBP14.34□□□□□ -0.11
PCM1-219ENST00000523540 MNX1P50219 401 aaPredicted RBP14.34□□□□□ -0.11
PCM1-219ENST00000523540 PAK3O75914 559 aaPredicted RBP14.25□□□□□ -0.13
PCM1-219ENST00000523540 PHF12Q96QT6 1004 aa14.25□□□□□ -0.13
PCM1-219ENST00000523540 NPM1P06748 294 aaKnown RBP eCLIP14.24□□□□□ -0.13
PCM1-219ENST00000523540 PROM2Q8N271 834 aa14.22□□□□□ -0.13
PCM1-219ENST00000523540 POTEB2H3BUK9 544 aa14.13□□□□□ -0.15
PCM1-219ENST00000523540 PELP1Q8IZL8 1130 aaKnown RBP14.11□□□□□ -0.15
PCM1-219ENST00000523540 OTUD5Q96G74 571 aa14.11□□□□□ -0.15
PCM1-219ENST00000523540 MS4A3Q96HJ5 214 aa14.07□□□□□ -0.16
PCM1-219ENST00000523540 ASTLQ6HA08 431 aaPredicted RBP14.05□□□□□ -0.16
PCM1-219ENST00000523540 ATMINO43313 823 aaPredicted RBP14□□□□□ -0.17
PCM1-219ENST00000523540 CCDC61Q9Y6R9 512 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 699 ms