RNA–Protein interactions for RNA: ENST00000522998.1

PCM1-217, Transcript of pericentriolar material 1, humanhuman

TSL 3

Gene PCM1, Length 493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-217ENST00000522998 AEBP2Q6ZN18 517 aaPredicted RBP23.94■■□□□ 1.42
PCM1-217ENST00000522998 CHIC1Q5VXU3 224 aa22.58■■□□□ 1.21
PCM1-217ENST00000522998 SENP3Q9H4L4 574 aaPredicted RBP20.5■□□□□ 0.87
PCM1-217ENST00000522998 PHF23Q9BUL5 403 aaPredicted RBP20.19■□□□□ 0.82
PCM1-217ENST00000522998 FOXD1Q16676 465 aa19.1■□□□□ 0.65
PCM1-217ENST00000522998 MSH5O43196 834 aa17.97■□□□□ 0.47
PCM1-217ENST00000522998 PLPPR3Q6T4P5 718 aa17.97■□□□□ 0.47
PCM1-217ENST00000522998 POTEDQ86YR6 584 aa17.85■□□□□ 0.45
PCM1-217ENST00000522998 PIAS4Q8N2W9 510 aaPredicted RBP17.83■□□□□ 0.44
PCM1-217ENST00000522998 PPP6R1Q9UPN7 881 aa17.7■□□□□ 0.42
PCM1-217ENST00000522998 ADRA2BP18089 450 aa17.65■□□□□ 0.42
PCM1-217ENST00000522998 MAPK8IP2Q13387 824 aaPredicted RBP16.26■□□□□ 0.19
PCM1-217ENST00000522998 DMRT2Q9Y5R5 561 aa16.21■□□□□ 0.19
PCM1-217ENST00000522998 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
PCM1-217ENST00000522998 PPP4R3CPQ6ZMV5 832 aa15.72■□□□□ 0.11
PCM1-217ENST00000522998 DCAF8L1A6NGE4 600 aa15.6■□□□□ 0.09
PCM1-217ENST00000522998 CACNB1Q02641 598 aaPredicted RBP15.55■□□□□ 0.08
PCM1-217ENST00000522998 HOXD11P31277 338 aaPredicted RBP15.53■□□□□ 0.08
PCM1-217ENST00000522998 CNKSR2Q8WXI2 1034 aa15.47■□□□□ 0.07
PCM1-217ENST00000522998 RNF216Q9NWF9 866 aaPredicted RBP15.37■□□□□ 0.05
PCM1-217ENST00000522998 RNF39Q9H2S5 420 aa15.3■□□□□ 0.04
PCM1-217ENST00000522998 C1QBPQ07021 282 aaKnown RBP15.08■□□□□ 0
PCM1-217ENST00000522998 NCBP3Q53F19 620 aaKnown RBP15.08■□□□□ 0
PCM1-217ENST00000522998 DNAJC5BQ9UF47 199 aa15.03■□□□□ -0
PCM1-217ENST00000522998 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.84□□□□□ -0.031e-8■□□□□ 11.2
PCM1-217ENST00000522998 NPM3O75607 178 aaKnown RBP14.83□□□□□ -0.04
PCM1-217ENST00000522998 U3KPZ7 1027 aaPredicted RBP14.48□□□□□ -0.09
PCM1-217ENST00000522998 KCNA4P22459 653 aa14.38□□□□□ -0.11
PCM1-217ENST00000522998 CAPN15O75808 1086 aa14.34□□□□□ -0.11
PCM1-217ENST00000522998 SPINK5Q9NQ38 1064 aaPredicted RBP14.32□□□□□ -0.12
PCM1-217ENST00000522998 DSG3P32926 999 aa14.27□□□□□ -0.13
PCM1-217ENST00000522998 SLC4A2P04920 1241 aa14.2□□□□□ -0.14
PCM1-217ENST00000522998 APLP2Q06481 763 aa14.09□□□□□ -0.15
PCM1-217ENST00000522998 TRHP20396 242 aaPredicted RBP14.06□□□□□ -0.16
PCM1-217ENST00000522998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.03□□□□□ -0.16
PCM1-217ENST00000522998 HNRNPUL2Q1KMD3 747 aaKnown RBP14.03□□□□□ -0.16
PCM1-217ENST00000522998 ZNF219Q9P2Y4 722 aaPredicted RBP14.02□□□□□ -0.17
PCM1-217ENST00000522998 ABCB7O75027 752 aa13.98□□□□□ -0.17
PCM1-217ENST00000522998 POTEHQ6S545 545 aa13.96□□□□□ -0.17
PCM1-217ENST00000522998 SAMD1Q6SPF0 538 aaPredicted RBP13.93□□□□□ -0.18
PCM1-217ENST00000522998 MYCNP04198 464 aaPredicted RBP13.74□□□□□ -0.21
PCM1-217ENST00000522998 RBM42Q9BTD8 480 aaKnown RBP13.65□□□□□ -0.22
PCM1-217ENST00000522998 POLA2Q14181 598 aa13.62□□□□□ -0.23
PCM1-217ENST00000522998 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
PCM1-217ENST00000522998 FOXD4L1Q9NU39 408 aa13.49□□□□□ -0.25
PCM1-217ENST00000522998 CHRDL2Q6WN34 429 aa13.41□□□□□ -0.26
PCM1-217ENST00000522998 ATF5Q9Y2D1 282 aaPredicted RBP13.41□□□□□ -0.26
PCM1-217ENST00000522998 ZBTB12Q9Y330 459 aaPredicted RBP13.36□□□□□ -0.27
PCM1-217ENST00000522998 AKT1S1Q96B36 256 aa13.28□□□□□ -0.28
PCM1-217ENST00000522998 ZBTB22O15209 634 aa13.2□□□□□ -0.3
PCM1-217ENST00000522998 OSCARQ8IYS5 282 aa13.2□□□□□ -0.3
PCM1-217ENST00000522998 REM2Q8IYK8 340 aaPredicted RBP13.15□□□□□ -0.3
PCM1-217ENST00000522998 ATXN8OSP0DMR3 200 aa13.09□□□□□ -0.31
PCM1-217ENST00000522998 PIP4P2Q8N4L2 257 aa13.05□□□□□ -0.32
PCM1-217ENST00000522998 PITPNM1O00562 1244 aa13.01□□□□□ -0.33
PCM1-217ENST00000522998 SP7Q8TDD2 431 aaPredicted RBP13□□□□□ -0.33
PCM1-217ENST00000522998 FBLN2P98095 1184 aa12.95□□□□□ -0.34
PCM1-217ENST00000522998 FXR2P51116 673 aaKnown RBP eCLIP12.93□□□□□ -0.341e-6■■□□□ 12.9
PCM1-217ENST00000522998 SPDYE2BA6NHP3 402 aa12.91□□□□□ -0.34
PCM1-217ENST00000522998 SPDYE6P0CI01 402 aa12.91□□□□□ -0.34
PCM1-217ENST00000522998 SPDYE2Q495Y8 402 aa12.91□□□□□ -0.34
PCM1-217ENST00000522998 HAX1O00165 279 aa12.89□□□□□ -0.35
PCM1-217ENST00000522998 MKRN4PQ13434 485 aaPredicted RBP12.78□□□□□ -0.36
PCM1-217ENST00000522998 SPDYE1Q8NFV5 336 aaPredicted RBP12.74□□□□□ -0.37
PCM1-217ENST00000522998 CLEC11AQ9Y240 323 aa12.74□□□□□ -0.37
PCM1-217ENST00000522998 ZNF692Q9BU19 519 aaPredicted RBP12.73□□□□□ -0.37
PCM1-217ENST00000522998 SSUH2Q9Y2M2 353 aa12.7□□□□□ -0.38
PCM1-217ENST00000522998 PRKAR2AP13861 404 aaKnown RBP12.69□□□□□ -0.38
PCM1-217ENST00000522998 EVX2Q03828 476 aa12.66□□□□□ -0.38
PCM1-217ENST00000522998 PABPN1Q86U42 306 aaKnown RBP eCLIP12.53□□□□□ -0.4
PCM1-217ENST00000522998 C19orf67A6NJJ6 358 aa12.52□□□□□ -0.41
PCM1-217ENST00000522998 PRR29P0C7W0 189 aa12.5□□□□□ -0.41
PCM1-217ENST00000522998 CHADLQ6NUI6 762 aa12.49□□□□□ -0.41
PCM1-217ENST00000522998 CSRNP3Q8WYN3 585 aa12.42□□□□□ -0.42
PCM1-217ENST00000522998 GABBR2O75899 941 aa12.39□□□□□ -0.43
PCM1-217ENST00000522998 FARP1Q9Y4F1 1045 aaPredicted RBP12.29□□□□□ -0.44
PCM1-217ENST00000522998 CD44P16070 742 aaKnown RBP12.28□□□□□ -0.44
PCM1-217ENST00000522998 LHX8Q68G74 356 aa12.19□□□□□ -0.46
PCM1-217ENST00000522998 EHMT2Q96KQ7 1210 aa12.19□□□□□ -0.46
PCM1-217ENST00000522998 STAG3Q9UJ98 1225 aa12.16□□□□□ -0.46
PCM1-217ENST00000522998 CLCN6P51797 869 aa12.15□□□□□ -0.46
PCM1-217ENST00000522998 SPDYE4A6NLX3 237 aa12.11□□□□□ -0.47
PCM1-217ENST00000522998 POTEIP0CG38 1075 aa12.11□□□□□ -0.47
PCM1-217ENST00000522998 CREBZFQ9NS37 354 aa12.11□□□□□ -0.47
PCM1-217ENST00000522998 ZRANB1Q9UGI0 708 aa12.08□□□□□ -0.48
PCM1-217ENST00000522998 ZNF579Q8NAF0 562 aaKnown RBP12.06□□□□□ -0.48
PCM1-217ENST00000522998 DCBLD2Q96PD2 775 aa12.05□□□□□ -0.48
PCM1-217ENST00000522998 PAK3O75914 559 aaPredicted RBP11.96□□□□□ -0.49
PCM1-217ENST00000522998 GALR2O43603 387 aaPredicted RBP11.93□□□□□ -0.5
PCM1-217ENST00000522998 NPM1P06748 294 aaKnown RBP eCLIP11.92□□□□□ -0.5
PCM1-217ENST00000522998 PHF12Q96QT6 1004 aa11.88□□□□□ -0.51
PCM1-217ENST00000522998 MNX1P50219 401 aaPredicted RBP11.86□□□□□ -0.51
PCM1-217ENST00000522998 PROM2Q8N271 834 aa11.75□□□□□ -0.53
PCM1-217ENST00000522998 MS4A3Q96HJ5 214 aa11.72□□□□□ -0.53
PCM1-217ENST00000522998 OTUD5Q96G74 571 aa11.71□□□□□ -0.53
PCM1-217ENST00000522998 POTEB2H3BUK9 544 aa11.7□□□□□ -0.54
PCM1-217ENST00000522998 PELP1Q8IZL8 1130 aaKnown RBP11.7□□□□□ -0.54
PCM1-217ENST00000522998 TSPYL2Q9H2G4 693 aaPredicted RBP11.69□□□□□ -0.54
PCM1-217ENST00000522998 ASTLQ6HA08 431 aaPredicted RBP11.66□□□□□ -0.54
PCM1-217ENST00000522998 ATMINO43313 823 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms