RNA–Protein interactions for RNA: ENST00000521425.5

TRAM1-205, Transcript of translocation associated membrane protein 1, humanhuman

TSL 2 BASIC

Gene TRAM1, Length 3,394 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAM1-205ENST00000521425 NISCHQ9Y2I1 1504 aa34.84■■■■□ 3.17
TRAM1-205ENST00000521425 SHROOM4Q9ULL8 1493 aa31.55■■■□□ 2.64
TRAM1-205ENST00000521425 DCAF8L2P0C7V8 631 aa31.48■■■□□ 2.63
TRAM1-205ENST00000521425 SUPT5HO00267 1087 aaKnown RBP30.99■■■□□ 2.55
TRAM1-205ENST00000521425 EHMT2Q96KQ7 1210 aa29.43■■■□□ 2.3
TRAM1-205ENST00000521425 ZCCHC6Q5VYS8 1495 aaKnown RBP29.22■■■□□ 2.27
TRAM1-205ENST00000521425 CHIC1Q5VXU3 224 aa29.12■■■□□ 2.25
TRAM1-205ENST00000521425 LOC105371045A0A1W2PR82 267 aa28.98■■■□□ 2.23
TRAM1-205ENST00000521425 FAM9AQ8IZU1 332 aaPredicted RBP28.96■■■□□ 2.23
TRAM1-205ENST00000521425 PCGF6Q9BYE7 350 aa28.84■■■□□ 2.21
TRAM1-205ENST00000521425 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
TRAM1-205ENST00000521425 ABCC9O60706 1549 aa28.74■■■□□ 2.19
TRAM1-205ENST00000521425 MYO15BQ96JP2 1530 aa28.71■■■□□ 2.19
TRAM1-205ENST00000521425 PPARGC1BQ86YN6 1023 aaKnown RBP28.37■■■□□ 2.13
TRAM1-205ENST00000521425 SCRIBQ14160 1630 aa28.36■■■□□ 2.13
TRAM1-205ENST00000521425 TRIM41Q8WV44 630 aa28.36■■■□□ 2.13
TRAM1-205ENST00000521425 TTBK1Q5TCY1 1321 aaPredicted RBP28.27■■■□□ 2.12
TRAM1-205ENST00000521425 PABPN1Q86U42 306 aaKnown RBP eCLIP28.08■■■□□ 2.09
TRAM1-205ENST00000521425 HRCP23327 699 aa27.96■■■□□ 2.07
TRAM1-205ENST00000521425 RSF1Q96T23 1441 aaPredicted RBP27.87■■■□□ 2.05
TRAM1-205ENST00000521425 CECR2Q9BXF3 1484 aa27.82■■■□□ 2.04
TRAM1-205ENST00000521425 RANGAP1P46060 587 aaPredicted RBP27.77■■■□□ 2.04
TRAM1-205ENST00000521425 PELP1Q8IZL8 1130 aaKnown RBP27.76■■■□□ 2.03
TRAM1-205ENST00000521425 DCAF1Q9Y4B6 1507 aa27.71■■■□□ 2.03
TRAM1-205ENST00000521425 RB1CC1Q8TDY2 1594 aa27.55■■■□□ 2
TRAM1-205ENST00000521425 TRIM26Q12899 539 aaPredicted RBP27.54■■■□□ 2
TRAM1-205ENST00000521425 MROH2BQ7Z745 1585 aa27.43■■□□□ 1.98
TRAM1-205ENST00000521425 UBTFP17480 764 aaKnown RBP27.35■■□□□ 1.97
TRAM1-205ENST00000521425 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.25■■□□□ 1.95
TRAM1-205ENST00000521425 WIZO95785 1651 aa27.22■■□□□ 1.95
TRAM1-205ENST00000521425 NACADO15069 1562 aa27.13■■□□□ 1.93
TRAM1-205ENST00000521425 CCER1Q8TC90 406 aaPredicted RBP27.06■■□□□ 1.92
TRAM1-205ENST00000521425 SCAF1Q9H7N4 1312 aaKnown RBP27.01■■□□□ 1.91
TRAM1-205ENST00000521425 ABCC8Q09428 1581 aa26.96■■□□□ 1.91
TRAM1-205ENST00000521425 HNRNPUL2Q1KMD3 747 aaKnown RBP26.84■■□□□ 1.89
TRAM1-205ENST00000521425 SOGA1O94964 1423 aa26.81■■□□□ 1.88
TRAM1-205ENST00000521425 CCDC88BA6NC98 1476 aa26.81■■□□□ 1.88
TRAM1-205ENST00000521425 MYT1Q01538 1121 aa26.75■■□□□ 1.87
TRAM1-205ENST00000521425 CSRNP3Q8WYN3 585 aa26.75■■□□□ 1.87
TRAM1-205ENST00000521425 BAZ1AQ9NRL2 1556 aaPredicted RBP26.7■■□□□ 1.86
TRAM1-205ENST00000521425 RUSC2Q8N2Y8 1516 aa26.69■■□□□ 1.86
TRAM1-205ENST00000521425 APLP2Q06481 763 aa26.61■■□□□ 1.85
TRAM1-205ENST00000521425 ZEB1P37275 1124 aaPredicted RBP26.55■■□□□ 1.84
TRAM1-205ENST00000521425 ITGAEP38570 1179 aa26.54■■□□□ 1.84
TRAM1-205ENST00000521425 ATP1B4Q9UN42 357 aaPredicted RBP26.53■■□□□ 1.84
TRAM1-205ENST00000521425 SMARCA4P51532 1647 aa26.46■■□□□ 1.83
TRAM1-205ENST00000521425 CEP162Q5TB80 1403 aa26.43■■□□□ 1.82
TRAM1-205ENST00000521425 YTHDC1Q96MU7 727 aaKnown RBP26.4■■□□□ 1.82
TRAM1-205ENST00000521425 WRNQ14191 1432 aaPredicted RBP eCLIP26.35■■□□□ 1.81
TRAM1-205ENST00000521425 TOP2AP11388 1531 aaKnown RBP26.35■■□□□ 1.81
TRAM1-205ENST00000521425 SMARCA2P51531 1590 aa26.33■■□□□ 1.81
TRAM1-205ENST00000521425 P3H3Q8IVL6 736 aa26.29■■□□□ 1.8
TRAM1-205ENST00000521425 BAZ1BQ9UIG0 1483 aaKnown RBP26.26■■□□□ 1.79
TRAM1-205ENST00000521425 UNC13AQ9UPW8 1703 aa26.23■■□□□ 1.79
TRAM1-205ENST00000521425 GTF3C3Q9Y5Q9 886 aa26.17■■□□□ 1.78
TRAM1-205ENST00000521425 BICRAQ9NZM4 1560 aa26.16■■□□□ 1.78
TRAM1-205ENST00000521425 DIEXFQ68CQ4 756 aaKnown RBP26.15■■□□□ 1.78
TRAM1-205ENST00000521425 NEUROD1Q13562 356 aa26.13■■□□□ 1.77
TRAM1-205ENST00000521425 ATAD2BQ9ULI0 1458 aa26.12■■□□□ 1.77
TRAM1-205ENST00000521425 TNIKQ9UKE5 1360 aa26.08■■□□□ 1.77
TRAM1-205ENST00000521425 CLIP1P30622 1438 aa26.06■■□□□ 1.76
TRAM1-205ENST00000521425 ACIN1Q9UKV3 1341 aaKnown RBP26.05■■□□□ 1.76
TRAM1-205ENST00000521425 GOLGA3Q08378 1498 aa25.99■■□□□ 1.75
TRAM1-205ENST00000521425 RAPGEF2Q9Y4G8 1499 aa25.98■■□□□ 1.75
TRAM1-205ENST00000521425 KANK4Q5T7N3 995 aaPredicted RBP25.95■■□□□ 1.74
TRAM1-205ENST00000521425 SYNJ1O43426 1573 aa25.92■■□□□ 1.74
TRAM1-205ENST00000521425 ARID3CA6NKF2 412 aa25.92■■□□□ 1.74
TRAM1-205ENST00000521425 EIF4G1Q04637 1599 aaKnown RBP25.88■■□□□ 1.73
TRAM1-205ENST00000521425 FAM50AQ14320 339 aaKnown RBP25.82■■□□□ 1.72
TRAM1-205ENST00000521425 DNAJC5BQ9UF47 199 aa25.8■■□□□ 1.72
TRAM1-205ENST00000521425 CEP164Q9UPV0 1460 aa25.79■■□□□ 1.72
TRAM1-205ENST00000521425 CENPBP07199 599 aaPredicted RBP25.76■■□□□ 1.72
TRAM1-205ENST00000521425 EEA1Q15075 1411 aa25.75■■□□□ 1.71
TRAM1-205ENST00000521425 ZNF316A6NFI3 1004 aaPredicted RBP25.73■■□□□ 1.71
TRAM1-205ENST00000521425 MIER1Q8N108 512 aa25.68■■□□□ 1.7
TRAM1-205ENST00000521425 HIRIP3Q9BW71 556 aaPredicted RBP25.63■■□□□ 1.69
TRAM1-205ENST00000521425 VPS8Q8N3P4 1428 aa25.58■■□□□ 1.69
TRAM1-205ENST00000521425 CUX2O14529 1486 aa25.56■■□□□ 1.68
TRAM1-205ENST00000521425 KIF27Q86VH2 1401 aa25.52■■□□□ 1.68
TRAM1-205ENST00000521425 BCL11AQ9H165 835 aa25.5■■□□□ 1.67
TRAM1-205ENST00000521425 CUX1P39880 1505 aa25.42■■□□□ 1.66
TRAM1-205ENST00000521425 SIN3AQ96ST3 1273 aa25.41■■□□□ 1.66
TRAM1-205ENST00000521425 KIF21BO75037 1637 aa25.41■■□□□ 1.66
TRAM1-205ENST00000521425 CNGB1Q14028 1251 aaPredicted RBP25.4■■□□□ 1.66
TRAM1-205ENST00000521425 NESP48681 1621 aa25.38■■□□□ 1.65
TRAM1-205ENST00000521425 CARMIL1Q5VZK9 1371 aa25.38■■□□□ 1.65
TRAM1-205ENST00000521425 ARAP1Q96P48 1450 aa25.37■■□□□ 1.65
TRAM1-205ENST00000521425 TDRD9Q8NDG6 1382 aaKnown RBP25.37■■□□□ 1.65
TRAM1-205ENST00000521425 NCAPD3P42695 1498 aa25.37■■□□□ 1.65
TRAM1-205ENST00000521425 CADPSQ9ULU8 1353 aa25.34■■□□□ 1.65
TRAM1-205ENST00000521425 RAD54L2Q9Y4B4 1467 aa25.34■■□□□ 1.65
TRAM1-205ENST00000521425 PEG3Q9GZU2 1588 aa25.33■■□□□ 1.65
TRAM1-205ENST00000521425 FBLN2P98095 1184 aa25.33■■□□□ 1.65
TRAM1-205ENST00000521425 CHIC2Q9UKJ5 165 aa25.33■■□□□ 1.65
TRAM1-205ENST00000521425 IGF1RP08069 1367 aa25.31■■□□□ 1.64
TRAM1-205ENST00000521425 TOP2BQ02880 1626 aa25.25■■□□□ 1.63
TRAM1-205ENST00000521425 CFTRP13569 1480 aa25.22■■□□□ 1.63
TRAM1-205ENST00000521425 FGD5Q6ZNL6 1462 aa25.22■■□□□ 1.63
TRAM1-205ENST00000521425 FHOD3Q2V2M9 1422 aa25.21■■□□□ 1.63
TRAM1-205ENST00000521425 PRXQ9BXM0 1461 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms