RNA–Protein interactions for RNA: ENST00000519955.1

NPM1-206, Transcript of nucleophosmin 1, humanhuman

TSL 2

Gene NPM1, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1-206ENST00000519955 AEBP2Q6ZN18 517 aaPredicted RBP27.14■■□□□ 1.94
NPM1-206ENST00000519955 CHIC1Q5VXU3 224 aa26.11■■□□□ 1.77
NPM1-206ENST00000519955 SENP3Q9H4L4 574 aaPredicted RBP23.04■■□□□ 1.28
NPM1-206ENST00000519955 PHF23Q9BUL5 403 aaPredicted RBP22.95■■□□□ 1.26
NPM1-206ENST00000519955 FOXD1Q16676 465 aa21.66■■□□□ 1.06
NPM1-206ENST00000519955 PLPPR3Q6T4P5 718 aa21.35■■□□□ 1.01
NPM1-206ENST00000519955 POTEDQ86YR6 584 aa20.74■□□□□ 0.91
NPM1-206ENST00000519955 MSH5O43196 834 aa20.31■□□□□ 0.84
NPM1-206ENST00000519955 ADRA2BP18089 450 aa20.14■□□□□ 0.81
NPM1-206ENST00000519955 PPP6R1Q9UPN7 881 aa20.14■□□□□ 0.81
NPM1-206ENST00000519955 PIAS4Q8N2W9 510 aaPredicted RBP20.06■□□□□ 0.8
NPM1-206ENST00000519955 PPP4R3CPQ6ZMV5 832 aa18.82■□□□□ 0.6
NPM1-206ENST00000519955 KCNA4P22459 653 aa18.66■□□□□ 0.58
NPM1-206ENST00000519955 SCAF1Q9H7N4 1312 aaKnown RBP18.53■□□□□ 0.56
NPM1-206ENST00000519955 NCBP3Q53F19 620 aaKnown RBP18.45■□□□□ 0.54
NPM1-206ENST00000519955 MAPK8IP2Q13387 824 aaPredicted RBP18.39■□□□□ 0.53
NPM1-206ENST00000519955 CNKSR2Q8WXI2 1034 aa18.26■□□□□ 0.51
NPM1-206ENST00000519955 DMRT2Q9Y5R5 561 aa18.25■□□□□ 0.51
NPM1-206ENST00000519955 NPM3O75607 178 aaKnown RBP18.12■□□□□ 0.49
NPM1-206ENST00000519955 SLC4A1APQ9BWU0 796 aaKnown RBP17.85■□□□□ 0.45
NPM1-206ENST00000519955 RNF216Q9NWF9 866 aaPredicted RBP17.83■□□□□ 0.44
NPM1-206ENST00000519955 CACNB1Q02641 598 aaPredicted RBP17.76■□□□□ 0.43
NPM1-206ENST00000519955 HOXD11P31277 338 aaPredicted RBP17.68■□□□□ 0.42
NPM1-206ENST00000519955 DNAJC5BQ9UF47 199 aa17.63■□□□□ 0.41
NPM1-206ENST00000519955 EHMT2Q96KQ7 1210 aa17.61■□□□□ 0.41
NPM1-206ENST00000519955 DCAF8L1A6NGE4 600 aa17.52■□□□□ 0.4
NPM1-206ENST00000519955 RNF39Q9H2S5 420 aa17.37■□□□□ 0.37
NPM1-206ENST00000519955 CSRNP3Q8WYN3 585 aa17.3■□□□□ 0.36
NPM1-206ENST00000519955 ZBTB22O15209 634 aa17.16■□□□□ 0.34
NPM1-206ENST00000519955 FOXD4L1Q9NU39 408 aa17.14■□□□□ 0.33
NPM1-206ENST00000519955 SLC4A2P04920 1241 aa17.03■□□□□ 0.32
NPM1-206ENST00000519955 C1QBPQ07021 282 aaKnown RBP17■□□□□ 0.31
NPM1-206ENST00000519955 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.85■□□□□ 0.299e-23■□□□□ 9.6
NPM1-206ENST00000519955 MYCNP04198 464 aaPredicted RBP16.78■□□□□ 0.28
NPM1-206ENST00000519955 U3KPZ7 1027 aaPredicted RBP16.58■□□□□ 0.24
NPM1-206ENST00000519955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.55■□□□□ 0.24
NPM1-206ENST00000519955 ATXN8OSP0DMR3 200 aa16.55■□□□□ 0.24
NPM1-206ENST00000519955 HNRNPUL2Q1KMD3 747 aaKnown RBP16.55■□□□□ 0.24
NPM1-206ENST00000519955 SAMD1Q6SPF0 538 aaPredicted RBP16.48■□□□□ 0.23
NPM1-206ENST00000519955 APLP2Q06481 763 aa16.33■□□□□ 0.2
NPM1-206ENST00000519955 ATF5Q9Y2D1 282 aaPredicted RBP16.24■□□□□ 0.19
NPM1-206ENST00000519955 SPINK5Q9NQ38 1064 aaPredicted RBP16.16■□□□□ 0.18
NPM1-206ENST00000519955 POTEHQ6S545 545 aa16.13■□□□□ 0.17
NPM1-206ENST00000519955 DSG3P32926 999 aa16.12■□□□□ 0.17
NPM1-206ENST00000519955 CAPN15O75808 1086 aa16.07■□□□□ 0.16
NPM1-206ENST00000519955 ZNF219Q9P2Y4 722 aaPredicted RBP16.02■□□□□ 0.16
NPM1-206ENST00000519955 TRHP20396 242 aaPredicted RBP15.95■□□□□ 0.14
NPM1-206ENST00000519955 POLA2Q14181 598 aa15.76■□□□□ 0.11
NPM1-206ENST00000519955 ABCB7O75027 752 aa15.72■□□□□ 0.11
NPM1-206ENST00000519955 FKBP8Q14318 412 aa15.64■□□□□ 0.09
NPM1-206ENST00000519955 FBLN2P98095 1184 aa15.62■□□□□ 0.09
NPM1-206ENST00000519955 ZBTB12Q9Y330 459 aaPredicted RBP15.59■□□□□ 0.09
NPM1-206ENST00000519955 MKRN4PQ13434 485 aaPredicted RBP15.56■□□□□ 0.08
NPM1-206ENST00000519955 SPDYE4A6NLX3 237 aa15.38■□□□□ 0.05
NPM1-206ENST00000519955 RBM42Q9BTD8 480 aaKnown RBP15.25■□□□□ 0.03
NPM1-206ENST00000519955 OSCARQ8IYS5 282 aa15.21■□□□□ 0.03
NPM1-206ENST00000519955 CHRDL2Q6WN34 429 aa15.2■□□□□ 0.02
NPM1-206ENST00000519955 PROM2Q8N271 834 aa15.18■□□□□ 0.02
NPM1-206ENST00000519955 SPDYE2BA6NHP3 402 aa15.17■□□□□ 0.02
NPM1-206ENST00000519955 SPDYE6P0CI01 402 aa15.17■□□□□ 0.02
NPM1-206ENST00000519955 SPDYE2Q495Y8 402 aa15.17■□□□□ 0.02
NPM1-206ENST00000519955 ZNF692Q9BU19 519 aaPredicted RBP15.13■□□□□ 0.01
NPM1-206ENST00000519955 FBXO3Q9UK99 471 aa15.07■□□□□ 0
NPM1-206ENST00000519955 SSUH2Q9Y2M2 353 aa15.06■□□□□ 0
NPM1-206ENST00000519955 PABPN1Q86U42 306 aaKnown RBP eCLIP14.93□□□□□ -0.02
NPM1-206ENST00000519955 SP7Q8TDD2 431 aaPredicted RBP14.88□□□□□ -0.03
NPM1-206ENST00000519955 AKT1S1Q96B36 256 aa14.86□□□□□ -0.03
NPM1-206ENST00000519955 VASPP50552 380 aaPredicted RBP14.81□□□□□ -0.04
NPM1-206ENST00000519955 STAG3Q9UJ98 1225 aa14.79□□□□□ -0.04
NPM1-206ENST00000519955 REM2Q8IYK8 340 aaPredicted RBP14.78□□□□□ -0.04
NPM1-206ENST00000519955 PIP4P2Q8N4L2 257 aa14.78□□□□□ -0.04
NPM1-206ENST00000519955 AMER1Q5JTC6 1135 aaPredicted RBP14.77□□□□□ -0.05
NPM1-206ENST00000519955 RTN4Q9NQC3 1192 aaKnown RBP14.67□□□□□ -0.06
NPM1-206ENST00000519955 PITPNM1O00562 1244 aa14.66□□□□□ -0.06
NPM1-206ENST00000519955 SPDYE1Q8NFV5 336 aaPredicted RBP14.65□□□□□ -0.06
NPM1-206ENST00000519955 IFNLR1Q8IU57 520 aaPredicted RBP14.61□□□□□ -0.07
NPM1-206ENST00000519955 FXR2P51116 673 aaKnown RBP eCLIP14.6□□□□□ -0.07
NPM1-206ENST00000519955 HAX1O00165 279 aa14.59□□□□□ -0.07
NPM1-206ENST00000519955 PLCD3Q8N3E9 789 aa14.57□□□□□ -0.08
NPM1-206ENST00000519955 MIER1Q8N108 512 aa14.55□□□□□ -0.08
NPM1-206ENST00000519955 CLEC11AQ9Y240 323 aa14.53□□□□□ -0.08
NPM1-206ENST00000519955 PLEKHG5O94827 1062 aa14.52□□□□□ -0.09
NPM1-206ENST00000519955 EVX2Q03828 476 aa14.52□□□□□ -0.09
NPM1-206ENST00000519955 KLHL34Q8N239 644 aa14.5□□□□□ -0.09
NPM1-206ENST00000519955 PRR29P0C7W0 189 aa14.47□□□□□ -0.09
NPM1-206ENST00000519955 ZBTB47Q9UFB7 747 aaPredicted RBP14.45□□□□□ -0.1
NPM1-206ENST00000519955 SPOCK2Q92563 424 aa14.43□□□□□ -0.1
NPM1-206ENST00000519955 CREBZFQ9NS37 354 aa14.32□□□□□ -0.12
NPM1-206ENST00000519955 PRKAR2AP13861 404 aaKnown RBP14.24□□□□□ -0.13
NPM1-206ENST00000519955 PKD2Q13563 968 aa14.22□□□□□ -0.13
NPM1-206ENST00000519955 MNX1P50219 401 aaPredicted RBP14.2□□□□□ -0.14
NPM1-206ENST00000519955 C19orf67A6NJJ6 358 aa14.15□□□□□ -0.14
NPM1-206ENST00000519955 NPM1P06748 294 aaKnown RBP eCLIP14.15□□□□□ -0.14
NPM1-206ENST00000519955 NUBP1P53384 320 aa14.15□□□□□ -0.14
NPM1-206ENST00000519955 CIZ1Q9ULV3 898 aaPredicted RBP14.13□□□□□ -0.15
NPM1-206ENST00000519955 CHADLQ6NUI6 762 aa14.12□□□□□ -0.15
NPM1-206ENST00000519955 ECM2O94769 699 aaPredicted RBP14.11□□□□□ -0.15
NPM1-206ENST00000519955 GSE1Q14687 1217 aa14.11□□□□□ -0.15
NPM1-206ENST00000519955 TRIM41Q8WV44 630 aa14.08□□□□□ -0.16
NPM1-206ENST00000519955 GABBR2O75899 941 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms