RNA–Protein interactions for RNA: ENST00000518877.1

PCM1-208, Transcript of pericentriolar material 1, humanhuman

TSL 3

Gene PCM1, Length 316 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-208ENST00000518877 AEBP2Q6ZN18 517 aaPredicted RBP22.21■■□□□ 1.15
PCM1-208ENST00000518877 CHIC1Q5VXU3 224 aa21.04■□□□□ 0.96
PCM1-208ENST00000518877 SENP3Q9H4L4 574 aaPredicted RBP19.01■□□□□ 0.63
PCM1-208ENST00000518877 PHF23Q9BUL5 403 aaPredicted RBP18.74■□□□□ 0.59
PCM1-208ENST00000518877 FOXD1Q16676 465 aa17.7■□□□□ 0.42
PCM1-208ENST00000518877 PLPPR3Q6T4P5 718 aa16.81■□□□□ 0.28
PCM1-208ENST00000518877 MSH5O43196 834 aa16.64■□□□□ 0.25
PCM1-208ENST00000518877 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
PCM1-208ENST00000518877 PPP6R1Q9UPN7 881 aa16.47■□□□□ 0.23
PCM1-208ENST00000518877 ADRA2BP18089 450 aa16.46■□□□□ 0.23
PCM1-208ENST00000518877 POTEDQ86YR6 584 aa16.34■□□□□ 0.21
PCM1-208ENST00000518877 MAPK8IP2Q13387 824 aaPredicted RBP15.13■□□□□ 0.01
PCM1-208ENST00000518877 SCAF1Q9H7N4 1312 aaKnown RBP15.1■□□□□ 0.01
PCM1-208ENST00000518877 DMRT2Q9Y5R5 561 aa15.04■□□□□ -0
PCM1-208ENST00000518877 PPP4R3CPQ6ZMV5 832 aa14.72□□□□□ -0.05
PCM1-208ENST00000518877 DCAF8L1A6NGE4 600 aa14.55□□□□□ -0.08
PCM1-208ENST00000518877 CNKSR2Q8WXI2 1034 aa14.46□□□□□ -0.09
PCM1-208ENST00000518877 HOXD11P31277 338 aaPredicted RBP14.44□□□□□ -0.1
PCM1-208ENST00000518877 CACNB1Q02641 598 aaPredicted RBP14.35□□□□□ -0.11
PCM1-208ENST00000518877 RNF216Q9NWF9 866 aaPredicted RBP14.33□□□□□ -0.12
PCM1-208ENST00000518877 NCBP3Q53F19 620 aaKnown RBP14.16□□□□□ -0.14
PCM1-208ENST00000518877 RNF39Q9H2S5 420 aa14.15□□□□□ -0.14
PCM1-208ENST00000518877 C1QBPQ07021 282 aaKnown RBP13.96□□□□□ -0.17
PCM1-208ENST00000518877 DNAJC5BQ9UF47 199 aa13.93□□□□□ -0.18
PCM1-208ENST00000518877 NPM3O75607 178 aaKnown RBP13.91□□□□□ -0.18
PCM1-208ENST00000518877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.85□□□□□ -0.197e-10■■■■□ 20
PCM1-208ENST00000518877 KCNA4P22459 653 aa13.59□□□□□ -0.23
PCM1-208ENST00000518877 U3KPZ7 1027 aaPredicted RBP13.49□□□□□ -0.25
PCM1-208ENST00000518877 CAPN15O75808 1086 aa13.37□□□□□ -0.27
PCM1-208ENST00000518877 SPINK5Q9NQ38 1064 aaPredicted RBP13.33□□□□□ -0.28
PCM1-208ENST00000518877 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
PCM1-208ENST00000518877 DSG3P32926 999 aa13.24□□□□□ -0.29
PCM1-208ENST00000518877 APLP2Q06481 763 aa13.17□□□□□ -0.3
PCM1-208ENST00000518877 TRHP20396 242 aaPredicted RBP13.14□□□□□ -0.31
PCM1-208ENST00000518877 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.12□□□□□ -0.31
PCM1-208ENST00000518877 HNRNPUL2Q1KMD3 747 aaKnown RBP13.12□□□□□ -0.31
PCM1-208ENST00000518877 ZNF219Q9P2Y4 722 aaPredicted RBP13.08□□□□□ -0.32
PCM1-208ENST00000518877 ABCB7O75027 752 aa13.04□□□□□ -0.32
PCM1-208ENST00000518877 SAMD1Q6SPF0 538 aaPredicted RBP13.03□□□□□ -0.32
PCM1-208ENST00000518877 MYCNP04198 464 aaPredicted RBP12.9□□□□□ -0.34
PCM1-208ENST00000518877 SLC4A1APQ9BWU0 796 aaKnown RBP12.84□□□□□ -0.35
PCM1-208ENST00000518877 POTEHQ6S545 545 aa12.81□□□□□ -0.36
PCM1-208ENST00000518877 POLA2Q14181 598 aa12.72□□□□□ -0.37
PCM1-208ENST00000518877 FOXD4L1Q9NU39 408 aa12.72□□□□□ -0.37
PCM1-208ENST00000518877 RBM42Q9BTD8 480 aaKnown RBP12.67□□□□□ -0.38
PCM1-208ENST00000518877 ATF5Q9Y2D1 282 aaPredicted RBP12.57□□□□□ -0.4
PCM1-208ENST00000518877 ZBTB12Q9Y330 459 aaPredicted RBP12.47□□□□□ -0.41
PCM1-208ENST00000518877 ZBTB22O15209 634 aa12.45□□□□□ -0.42
PCM1-208ENST00000518877 CHRDL2Q6WN34 429 aa12.4□□□□□ -0.42
PCM1-208ENST00000518877 AKT1S1Q96B36 256 aa12.34□□□□□ -0.43
PCM1-208ENST00000518877 OSCARQ8IYS5 282 aa12.33□□□□□ -0.44
PCM1-208ENST00000518877 ATXN8OSP0DMR3 200 aa12.3□□□□□ -0.44
PCM1-208ENST00000518877 REM2Q8IYK8 340 aaPredicted RBP12.22□□□□□ -0.45
PCM1-208ENST00000518877 FBLN2P98095 1184 aa12.16□□□□□ -0.46
PCM1-208ENST00000518877 PITPNM1O00562 1244 aa12.1□□□□□ -0.47
PCM1-208ENST00000518877 PIP4P2Q8N4L2 257 aa12.08□□□□□ -0.48
PCM1-208ENST00000518877 SPDYE2BA6NHP3 402 aa12.06□□□□□ -0.48
PCM1-208ENST00000518877 SPDYE6P0CI01 402 aa12.06□□□□□ -0.48
PCM1-208ENST00000518877 SPDYE2Q495Y8 402 aa12.06□□□□□ -0.48
PCM1-208ENST00000518877 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.495e-7■■■□□ 18.1
PCM1-208ENST00000518877 MKRN4PQ13434 485 aaPredicted RBP11.97□□□□□ -0.49
PCM1-208ENST00000518877 SP7Q8TDD2 431 aaPredicted RBP11.97□□□□□ -0.49
PCM1-208ENST00000518877 HAX1O00165 279 aa11.94□□□□□ -0.5
PCM1-208ENST00000518877 ZNF692Q9BU19 519 aaPredicted RBP11.94□□□□□ -0.5
PCM1-208ENST00000518877 CLEC11AQ9Y240 323 aa11.93□□□□□ -0.5
PCM1-208ENST00000518877 SPDYE1Q8NFV5 336 aaPredicted RBP11.9□□□□□ -0.5
PCM1-208ENST00000518877 SSUH2Q9Y2M2 353 aa11.85□□□□□ -0.51
PCM1-208ENST00000518877 CSRNP3Q8WYN3 585 aa11.82□□□□□ -0.52
PCM1-208ENST00000518877 PRKAR2AP13861 404 aaKnown RBP11.81□□□□□ -0.52
PCM1-208ENST00000518877 PABPN1Q86U42 306 aaKnown RBP eCLIP11.74□□□□□ -0.53
PCM1-208ENST00000518877 EVX2Q03828 476 aa11.71□□□□□ -0.53
PCM1-208ENST00000518877 EHMT2Q96KQ7 1210 aa11.71□□□□□ -0.53
PCM1-208ENST00000518877 PRR29P0C7W0 189 aa11.69□□□□□ -0.54
PCM1-208ENST00000518877 CHADLQ6NUI6 762 aa11.67□□□□□ -0.54
PCM1-208ENST00000518877 C19orf67A6NJJ6 358 aa11.6□□□□□ -0.55
PCM1-208ENST00000518877 GABBR2O75899 941 aa11.47□□□□□ -0.57
PCM1-208ENST00000518877 FARP1Q9Y4F1 1045 aaPredicted RBP11.46□□□□□ -0.57
PCM1-208ENST00000518877 CD44P16070 742 aaKnown RBP11.44□□□□□ -0.58
PCM1-208ENST00000518877 SPDYE4A6NLX3 237 aa11.43□□□□□ -0.58
PCM1-208ENST00000518877 STAG3Q9UJ98 1225 aa11.42□□□□□ -0.58
PCM1-208ENST00000518877 CREBZFQ9NS37 354 aa11.32□□□□□ -0.6
PCM1-208ENST00000518877 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
PCM1-208ENST00000518877 CLCN6P51797 869 aa11.27□□□□□ -0.61
PCM1-208ENST00000518877 LHX8Q68G74 356 aa11.24□□□□□ -0.61
PCM1-208ENST00000518877 ZNF579Q8NAF0 562 aaKnown RBP11.22□□□□□ -0.61
PCM1-208ENST00000518877 PAK3O75914 559 aaPredicted RBP11.2□□□□□ -0.62
PCM1-208ENST00000518877 DCBLD2Q96PD2 775 aa11.2□□□□□ -0.62
PCM1-208ENST00000518877 POTEIP0CG38 1075 aa11.19□□□□□ -0.62
PCM1-208ENST00000518877 NPM1P06748 294 aaKnown RBP eCLIP11.17□□□□□ -0.62
PCM1-208ENST00000518877 GALR2O43603 387 aaPredicted RBP11.1□□□□□ -0.63
PCM1-208ENST00000518877 PHF12Q96QT6 1004 aa11.09□□□□□ -0.63
PCM1-208ENST00000518877 MNX1P50219 401 aaPredicted RBP11.08□□□□□ -0.64
PCM1-208ENST00000518877 PROM2Q8N271 834 aa11.04□□□□□ -0.64
PCM1-208ENST00000518877 PLEKHG5O94827 1062 aa10.98□□□□□ -0.65
PCM1-208ENST00000518877 TSPYL2Q9H2G4 693 aaPredicted RBP10.98□□□□□ -0.65
PCM1-208ENST00000518877 MIER1Q8N108 512 aa10.95□□□□□ -0.66
PCM1-208ENST00000518877 MS4A3Q96HJ5 214 aa10.93□□□□□ -0.66
PCM1-208ENST00000518877 PLCD3Q8N3E9 789 aa10.87□□□□□ -0.67
PCM1-208ENST00000518877 CCDC61Q9Y6R9 512 aa10.87□□□□□ -0.67
PCM1-208ENST00000518877 PELP1Q8IZL8 1130 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms