RNA–Protein interactions for RNA: ENST00000518604.1

SQLE-202, Transcript of squalene epoxidase, humanhuman

TSL 2

Gene SQLE, Length 743 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-202ENST00000518604 AEBP2Q6ZN18 517 aaPredicted RBP21.63■■□□□ 1.05
SQLE-202ENST00000518604 CHIC1Q5VXU3 224 aa21.33■■□□□ 1.01
SQLE-202ENST00000518604 PHF23Q9BUL5 403 aaPredicted RBP18.73■□□□□ 0.59
SQLE-202ENST00000518604 SENP3Q9H4L4 574 aaPredicted RBP18.42■□□□□ 0.54
SQLE-202ENST00000518604 PLPPR3Q6T4P5 718 aa17.47■□□□□ 0.39
SQLE-202ENST00000518604 FOXD1Q16676 465 aa17.28■□□□□ 0.36
SQLE-202ENST00000518604 POTEDQ86YR6 584 aa16.74■□□□□ 0.27
SQLE-202ENST00000518604 ADRA2BP18089 450 aa16.42■□□□□ 0.22
SQLE-202ENST00000518604 PPP6R1Q9UPN7 881 aa16.42■□□□□ 0.22
SQLE-202ENST00000518604 MSH5O43196 834 aa16.28■□□□□ 0.2
SQLE-202ENST00000518604 PIAS4Q8N2W9 510 aaPredicted RBP15.99■□□□□ 0.15
SQLE-202ENST00000518604 PPP4R3CPQ6ZMV5 832 aa15.39■□□□□ 0.05
SQLE-202ENST00000518604 KCNA4P22459 653 aa15.3■□□□□ 0.04
SQLE-202ENST00000518604 SCAF1Q9H7N4 1312 aaKnown RBP15.16■□□□□ 0.02
SQLE-202ENST00000518604 NCBP3Q53F19 620 aaKnown RBP15.14■□□□□ 0.01
SQLE-202ENST00000518604 CNKSR2Q8WXI2 1034 aa14.94□□□□□ -0.02
SQLE-202ENST00000518604 NPM3O75607 178 aaKnown RBP14.83□□□□□ -0.04
SQLE-202ENST00000518604 MAPK8IP2Q13387 824 aaPredicted RBP14.8□□□□□ -0.04
SQLE-202ENST00000518604 SLC4A1APQ9BWU0 796 aaKnown RBP14.66□□□□□ -0.06
SQLE-202ENST00000518604 DMRT2Q9Y5R5 561 aa14.62□□□□□ -0.07
SQLE-202ENST00000518604 RNF216Q9NWF9 866 aaPredicted RBP14.58□□□□□ -0.08
SQLE-202ENST00000518604 DNAJC5BQ9UF47 199 aa14.5□□□□□ -0.09
SQLE-202ENST00000518604 EHMT2Q96KQ7 1210 aa14.48□□□□□ -0.09
SQLE-202ENST00000518604 HOXD11P31277 338 aaPredicted RBP14.45□□□□□ -0.1
SQLE-202ENST00000518604 CACNB1Q02641 598 aaPredicted RBP14.25□□□□□ -0.13
SQLE-202ENST00000518604 CSRNP3Q8WYN3 585 aa14.25□□□□□ -0.13
SQLE-202ENST00000518604 FOXD4L1Q9NU39 408 aa14.06□□□□□ -0.16
SQLE-202ENST00000518604 ZBTB22O15209 634 aa14.05□□□□□ -0.16
SQLE-202ENST00000518604 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
SQLE-202ENST00000518604 SLC4A2P04920 1241 aa13.93□□□□□ -0.18
SQLE-202ENST00000518604 RNF39Q9H2S5 420 aa13.91□□□□□ -0.18
SQLE-202ENST00000518604 MYCNP04198 464 aaPredicted RBP13.74□□□□□ -0.21
SQLE-202ENST00000518604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.74□□□□□ -0.21
SQLE-202ENST00000518604 C1QBPQ07021 282 aaKnown RBP13.63□□□□□ -0.23
SQLE-202ENST00000518604 ATXN8OSP0DMR3 200 aa13.62□□□□□ -0.23
SQLE-202ENST00000518604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.56□□□□□ -0.24
SQLE-202ENST00000518604 HNRNPUL2Q1KMD3 747 aaKnown RBP13.56□□□□□ -0.24
SQLE-202ENST00000518604 U3KPZ7 1027 aaPredicted RBP13.52□□□□□ -0.25
SQLE-202ENST00000518604 SAMD1Q6SPF0 538 aaPredicted RBP13.49□□□□□ -0.25
SQLE-202ENST00000518604 APLP2Q06481 763 aa13.37□□□□□ -0.27
SQLE-202ENST00000518604 ATF5Q9Y2D1 282 aaPredicted RBP13.26□□□□□ -0.29
SQLE-202ENST00000518604 ZNF219Q9P2Y4 722 aaPredicted RBP13.1□□□□□ -0.31
SQLE-202ENST00000518604 SPINK5Q9NQ38 1064 aaPredicted RBP13.03□□□□□ -0.32
SQLE-202ENST00000518604 CAPN15O75808 1086 aa13□□□□□ -0.33
SQLE-202ENST00000518604 POTEHQ6S545 545 aa13□□□□□ -0.33
SQLE-202ENST00000518604 TRHP20396 242 aaPredicted RBP12.99□□□□□ -0.33
SQLE-202ENST00000518604 DSG3P32926 999 aa12.87□□□□□ -0.35
SQLE-202ENST00000518604 POLA2Q14181 598 aa12.86□□□□□ -0.35
SQLE-202ENST00000518604 FKBP8Q14318 412 aa12.85□□□□□ -0.35
SQLE-202ENST00000518604 FBLN2P98095 1184 aa12.79□□□□□ -0.36
SQLE-202ENST00000518604 ZBTB12Q9Y330 459 aaPredicted RBP12.77□□□□□ -0.37
SQLE-202ENST00000518604 ABCB7O75027 752 aa12.72□□□□□ -0.37
SQLE-202ENST00000518604 MKRN4PQ13434 485 aaPredicted RBP12.72□□□□□ -0.37
SQLE-202ENST00000518604 SPDYE4A6NLX3 237 aa12.61□□□□□ -0.39
SQLE-202ENST00000518604 PROM2Q8N271 834 aa12.48□□□□□ -0.41
SQLE-202ENST00000518604 FBXO3Q9UK99 471 aa12.43□□□□□ -0.42
SQLE-202ENST00000518604 SPDYE2BA6NHP3 402 aa12.42□□□□□ -0.42
SQLE-202ENST00000518604 SPDYE6P0CI01 402 aa12.42□□□□□ -0.42
SQLE-202ENST00000518604 SPDYE2Q495Y8 402 aa12.42□□□□□ -0.42
SQLE-202ENST00000518604 OSCARQ8IYS5 282 aa12.38□□□□□ -0.43
SQLE-202ENST00000518604 ZNF692Q9BU19 519 aaPredicted RBP12.37□□□□□ -0.43
SQLE-202ENST00000518604 SSUH2Q9Y2M2 353 aa12.32□□□□□ -0.44
SQLE-202ENST00000518604 AMER1Q5JTC6 1135 aaPredicted RBP12.27□□□□□ -0.45
SQLE-202ENST00000518604 RBM42Q9BTD8 480 aaKnown RBP12.21□□□□□ -0.45
SQLE-202ENST00000518604 PABPN1Q86U42 306 aaKnown RBP eCLIP12.19□□□□□ -0.46
SQLE-202ENST00000518604 VASPP50552 380 aaPredicted RBP12.18□□□□□ -0.46
SQLE-202ENST00000518604 CHRDL2Q6WN34 429 aa12.17□□□□□ -0.46
SQLE-202ENST00000518604 STAG3Q9UJ98 1225 aa12.16□□□□□ -0.46
SQLE-202ENST00000518604 RTN4Q9NQC3 1192 aaKnown RBP12.14□□□□□ -0.47
SQLE-202ENST00000518604 AKT1S1Q96B36 256 aa12.09□□□□□ -0.47
SQLE-202ENST00000518604 IFNLR1Q8IU57 520 aaPredicted RBP12.01□□□□□ -0.49
SQLE-202ENST00000518604 SPDYE1Q8NFV5 336 aaPredicted RBP11.98□□□□□ -0.49
SQLE-202ENST00000518604 SP7Q8TDD2 431 aaPredicted RBP11.97□□□□□ -0.49
SQLE-202ENST00000518604 PLCD3Q8N3E9 789 aa11.95□□□□□ -0.5
SQLE-202ENST00000518604 MIER1Q8N108 512 aa11.94□□□□□ -0.5
SQLE-202ENST00000518604 REM2Q8IYK8 340 aaPredicted RBP11.93□□□□□ -0.5
SQLE-202ENST00000518604 PLEKHG5O94827 1062 aa11.92□□□□□ -0.5
SQLE-202ENST00000518604 KLHL34Q8N239 644 aa11.91□□□□□ -0.5
SQLE-202ENST00000518604 ZBTB47Q9UFB7 747 aaPredicted RBP11.88□□□□□ -0.51
SQLE-202ENST00000518604 SPOCK2Q92563 424 aa11.87□□□□□ -0.51
SQLE-202ENST00000518604 CLEC11AQ9Y240 323 aa11.84□□□□□ -0.51
SQLE-202ENST00000518604 PRR29P0C7W0 189 aa11.82□□□□□ -0.52
SQLE-202ENST00000518604 PIP4P2Q8N4L2 257 aa11.8□□□□□ -0.52
SQLE-202ENST00000518604 PITPNM1O00562 1244 aa11.76□□□□□ -0.53
SQLE-202ENST00000518604 PKD2Q13563 968 aa11.72□□□□□ -0.53
SQLE-202ENST00000518604 CREBZFQ9NS37 354 aa11.7□□□□□ -0.54
SQLE-202ENST00000518604 HAX1O00165 279 aa11.67□□□□□ -0.54
SQLE-202ENST00000518604 FXR2P51116 673 aaKnown RBP eCLIP11.67□□□□□ -0.541e-10■■■□□ 15.6
SQLE-202ENST00000518604 MNX1P50219 401 aaPredicted RBP11.62□□□□□ -0.55
SQLE-202ENST00000518604 ECM2O94769 699 aaPredicted RBP11.61□□□□□ -0.55
SQLE-202ENST00000518604 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
SQLE-202ENST00000518604 NUBP1P53384 320 aa11.6□□□□□ -0.55
SQLE-202ENST00000518604 GSE1Q14687 1217 aa11.6□□□□□ -0.55
SQLE-202ENST00000518604 NPM1P06748 294 aaKnown RBP eCLIP11.59□□□□□ -0.55
SQLE-202ENST00000518604 EVX2Q03828 476 aa11.59□□□□□ -0.55
SQLE-202ENST00000518604 CIZ1Q9ULV3 898 aaPredicted RBP11.59□□□□□ -0.55
SQLE-202ENST00000518604 FAM212AQ96EL1 285 aa11.52□□□□□ -0.57
SQLE-202ENST00000518604 DCAF8Q5TAQ9 597 aa11.51□□□□□ -0.57
SQLE-202ENST00000518604 DCAF8L2P0C7V8 631 aa11.5□□□□□ -0.57
SQLE-202ENST00000518604 CHADLQ6NUI6 762 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms