RNA–Protein interactions for RNA: ENST00000517400.5

LINC00534-201, long intergenic non-protein coding RNA 534, humanhuman

TSL 2 BASIC

Gene LINC00534, Length 793 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00534-201ENST00000517400 AEBP2Q6ZN18 517 aaPredicted RBP21.2■□□□□ 0.98
LINC00534-201ENST00000517400 CHIC1Q5VXU3 224 aa20.18■□□□□ 0.82
LINC00534-201ENST00000517400 SENP3Q9H4L4 574 aaPredicted RBP17.94■□□□□ 0.46
LINC00534-201ENST00000517400 PHF23Q9BUL5 403 aaPredicted RBP17.78■□□□□ 0.44
LINC00534-201ENST00000517400 FOXD1Q16676 465 aa16.78■□□□□ 0.28
LINC00534-201ENST00000517400 PLPPR3Q6T4P5 718 aa16.53■□□□□ 0.24
LINC00534-201ENST00000517400 PPP6R1Q9UPN7 881 aa15.83■□□□□ 0.12
LINC00534-201ENST00000517400 ADRA2BP18089 450 aa15.74■□□□□ 0.11
LINC00534-201ENST00000517400 PIAS4Q8N2W9 510 aaPredicted RBP15.63■□□□□ 0.09
LINC00534-201ENST00000517400 MSH5O43196 834 aa15.57■□□□□ 0.08
LINC00534-201ENST00000517400 POTEDQ86YR6 584 aa15.08■□□□□ 0
LINC00534-201ENST00000517400 KCNA4P22459 653 aa14.59□□□□□ -0.07
LINC00534-201ENST00000517400 PPP4R3CPQ6ZMV5 832 aa14.59□□□□□ -0.07
LINC00534-201ENST00000517400 MAPK8IP2Q13387 824 aaPredicted RBP14.45□□□□□ -0.1
LINC00534-201ENST00000517400 NCBP3Q53F19 620 aaKnown RBP14.31□□□□□ -0.12
LINC00534-201ENST00000517400 DMRT2Q9Y5R5 561 aa14.29□□□□□ -0.12
LINC00534-201ENST00000517400 SCAF1Q9H7N4 1312 aaKnown RBP14.28□□□□□ -0.12
LINC00534-201ENST00000517400 CNKSR2Q8WXI2 1034 aa14.13□□□□□ -0.15
LINC00534-201ENST00000517400 NPM3O75607 178 aaKnown RBP14.09□□□□□ -0.15
LINC00534-201ENST00000517400 SLC4A1APQ9BWU0 796 aaKnown RBP13.95□□□□□ -0.18
LINC00534-201ENST00000517400 EHMT2Q96KQ7 1210 aa13.87□□□□□ -0.19
LINC00534-201ENST00000517400 HOXD11P31277 338 aaPredicted RBP13.83□□□□□ -0.2
LINC00534-201ENST00000517400 RNF216Q9NWF9 866 aaPredicted RBP13.78□□□□□ -0.2
LINC00534-201ENST00000517400 DNAJC5BQ9UF47 199 aa13.72□□□□□ -0.21
LINC00534-201ENST00000517400 CSRNP3Q8WYN3 585 aa13.62□□□□□ -0.23
LINC00534-201ENST00000517400 DCAF8L1A6NGE4 600 aa13.58□□□□□ -0.24
LINC00534-201ENST00000517400 ZBTB22O15209 634 aa13.43□□□□□ -0.26
LINC00534-201ENST00000517400 RNF39Q9H2S5 420 aa13.37□□□□□ -0.27
LINC00534-201ENST00000517400 FOXD4L1Q9NU39 408 aa13.35□□□□□ -0.27
LINC00534-201ENST00000517400 CACNB1Q02641 598 aaPredicted RBP13.28□□□□□ -0.28
LINC00534-201ENST00000517400 SLC4A2P04920 1241 aa13.23□□□□□ -0.29
LINC00534-201ENST00000517400 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
LINC00534-201ENST00000517400 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.07□□□□□ -0.32
LINC00534-201ENST00000517400 MYCNP04198 464 aaPredicted RBP13.01□□□□□ -0.33
LINC00534-201ENST00000517400 U3KPZ7 1027 aaPredicted RBP12.91□□□□□ -0.34
LINC00534-201ENST00000517400 ATXN8OSP0DMR3 200 aa12.9□□□□□ -0.34
LINC00534-201ENST00000517400 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.78□□□□□ -0.36
LINC00534-201ENST00000517400 HNRNPUL2Q1KMD3 747 aaKnown RBP12.78□□□□□ -0.36
LINC00534-201ENST00000517400 SAMD1Q6SPF0 538 aaPredicted RBP12.73□□□□□ -0.37
LINC00534-201ENST00000517400 SPINK5Q9NQ38 1064 aaPredicted RBP12.69□□□□□ -0.38
LINC00534-201ENST00000517400 ATF5Q9Y2D1 282 aaPredicted RBP12.63□□□□□ -0.39
LINC00534-201ENST00000517400 APLP2Q06481 763 aa12.57□□□□□ -0.4
LINC00534-201ENST00000517400 CAPN15O75808 1086 aa12.56□□□□□ -0.4
LINC00534-201ENST00000517400 DSG3P32926 999 aa12.56□□□□□ -0.4
LINC00534-201ENST00000517400 ZNF219Q9P2Y4 722 aaPredicted RBP12.42□□□□□ -0.42
LINC00534-201ENST00000517400 TRHP20396 242 aaPredicted RBP12.4□□□□□ -0.42
LINC00534-201ENST00000517400 ABCB7O75027 752 aa12.32□□□□□ -0.44
LINC00534-201ENST00000517400 FKBP8Q14318 412 aa12.27□□□□□ -0.45
LINC00534-201ENST00000517400 POLA2Q14181 598 aa12.19□□□□□ -0.46
LINC00534-201ENST00000517400 MKRN4PQ13434 485 aaPredicted RBP12.11□□□□□ -0.47
LINC00534-201ENST00000517400 FBLN2P98095 1184 aa12.09□□□□□ -0.47
LINC00534-201ENST00000517400 ZBTB12Q9Y330 459 aaPredicted RBP12.02□□□□□ -0.49
LINC00534-201ENST00000517400 SPDYE4A6NLX3 237 aa11.98□□□□□ -0.49
LINC00534-201ENST00000517400 PROM2Q8N271 834 aa11.87□□□□□ -0.51
LINC00534-201ENST00000517400 RBM42Q9BTD8 480 aaKnown RBP11.87□□□□□ -0.51
LINC00534-201ENST00000517400 POTEHQ6S545 545 aa11.8□□□□□ -0.52
LINC00534-201ENST00000517400 FBXO3Q9UK99 471 aa11.79□□□□□ -0.52
LINC00534-201ENST00000517400 AMER1Q5JTC6 1135 aaPredicted RBP11.76□□□□□ -0.53
LINC00534-201ENST00000517400 OSCARQ8IYS5 282 aa11.75□□□□□ -0.53
LINC00534-201ENST00000517400 SPDYE2BA6NHP3 402 aa11.72□□□□□ -0.53
LINC00534-201ENST00000517400 SPDYE6P0CI01 402 aa11.72□□□□□ -0.53
LINC00534-201ENST00000517400 SPDYE2Q495Y8 402 aa11.72□□□□□ -0.53
LINC00534-201ENST00000517400 ZNF692Q9BU19 519 aaPredicted RBP11.71□□□□□ -0.53
LINC00534-201ENST00000517400 RTN4Q9NQC3 1192 aaKnown RBP11.7□□□□□ -0.54
LINC00534-201ENST00000517400 AKT1S1Q96B36 256 aa11.67□□□□□ -0.54
LINC00534-201ENST00000517400 SSUH2Q9Y2M2 353 aa11.66□□□□□ -0.54
LINC00534-201ENST00000517400 CHRDL2Q6WN34 429 aa11.62□□□□□ -0.55
LINC00534-201ENST00000517400 REM2Q8IYK8 340 aaPredicted RBP11.6□□□□□ -0.55
LINC00534-201ENST00000517400 VASPP50552 380 aaPredicted RBP11.59□□□□□ -0.55
LINC00534-201ENST00000517400 PABPN1Q86U42 306 aaKnown RBP eCLIP11.55□□□□□ -0.56
LINC00534-201ENST00000517400 STAG3Q9UJ98 1225 aa11.51□□□□□ -0.57
LINC00534-201ENST00000517400 PITPNM1O00562 1244 aa11.47□□□□□ -0.57
LINC00534-201ENST00000517400 IFNLR1Q8IU57 520 aaPredicted RBP11.47□□□□□ -0.57
LINC00534-201ENST00000517400 PIP4P2Q8N4L2 257 aa11.4□□□□□ -0.58
LINC00534-201ENST00000517400 FXR2P51116 673 aaKnown RBP eCLIP11.37□□□□□ -0.59
LINC00534-201ENST00000517400 MIER1Q8N108 512 aa11.33□□□□□ -0.6
LINC00534-201ENST00000517400 PLCD3Q8N3E9 789 aa11.33□□□□□ -0.6
LINC00534-201ENST00000517400 KLHL34Q8N239 644 aa11.31□□□□□ -0.6
LINC00534-201ENST00000517400 SPDYE1Q8NFV5 336 aaPredicted RBP11.29□□□□□ -0.6
LINC00534-201ENST00000517400 SPOCK2Q92563 424 aa11.28□□□□□ -0.6
LINC00534-201ENST00000517400 PLEKHG5O94827 1062 aa11.25□□□□□ -0.61
LINC00534-201ENST00000517400 ZBTB47Q9UFB7 747 aaPredicted RBP11.23□□□□□ -0.61
LINC00534-201ENST00000517400 CLEC11AQ9Y240 323 aa11.22□□□□□ -0.61
LINC00534-201ENST00000517400 PKD2Q13563 968 aa11.21□□□□□ -0.61
LINC00534-201ENST00000517400 PRR29P0C7W0 189 aa11.16□□□□□ -0.62
LINC00534-201ENST00000517400 PRKAR2AP13861 404 aaKnown RBP11.14□□□□□ -0.63
LINC00534-201ENST00000517400 EVX2Q03828 476 aa11.11□□□□□ -0.63
LINC00534-201ENST00000517400 SP7Q8TDD2 431 aaPredicted RBP11.11□□□□□ -0.63
LINC00534-201ENST00000517400 CREBZFQ9NS37 354 aa11.1□□□□□ -0.63
LINC00534-201ENST00000517400 HAX1O00165 279 aa11.09□□□□□ -0.63
LINC00534-201ENST00000517400 SLC24A1O60721 1099 aa11.09□□□□□ -0.63
LINC00534-201ENST00000517400 ECM2O94769 699 aaPredicted RBP11.07□□□□□ -0.64
LINC00534-201ENST00000517400 CHADLQ6NUI6 762 aa11.07□□□□□ -0.64
LINC00534-201ENST00000517400 MNX1P50219 401 aaPredicted RBP11.04□□□□□ -0.64
LINC00534-201ENST00000517400 CIZ1Q9ULV3 898 aaPredicted RBP11.03□□□□□ -0.64
LINC00534-201ENST00000517400 NUBP1P53384 320 aa11.02□□□□□ -0.65
LINC00534-201ENST00000517400 C19orf67A6NJJ6 358 aa11□□□□□ -0.65
LINC00534-201ENST00000517400 DCAF8L2P0C7V8 631 aa11□□□□□ -0.65
LINC00534-201ENST00000517400 GSE1Q14687 1217 aa10.99□□□□□ -0.65
LINC00534-201ENST00000517400 TRIM41Q8WV44 630 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms