RNA–Protein interactions for RNA: ENST00000513819.1

NIPBL-207, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 3

Gene NIPBL, Length 452 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-207ENST00000513819 AEBP2Q6ZN18 517 aaPredicted RBP19.3■□□□□ 0.68
NIPBL-207ENST00000513819 CHIC1Q5VXU3 224 aa19.18■□□□□ 0.66
NIPBL-207ENST00000513819 PHF23Q9BUL5 403 aaPredicted RBP16.95■□□□□ 0.3
NIPBL-207ENST00000513819 SENP3Q9H4L4 574 aaPredicted RBP16.24■□□□□ 0.19
NIPBL-207ENST00000513819 PLPPR3Q6T4P5 718 aa15.73■□□□□ 0.11
NIPBL-207ENST00000513819 FOXD1Q16676 465 aa15.08■□□□□ 0
NIPBL-207ENST00000513819 ADRA2BP18089 450 aa14.86□□□□□ -0.03
NIPBL-207ENST00000513819 PPP6R1Q9UPN7 881 aa14.84□□□□□ -0.03
NIPBL-207ENST00000513819 POTEDQ86YR6 584 aa14.46□□□□□ -0.09
NIPBL-207ENST00000513819 PIAS4Q8N2W9 510 aaPredicted RBP14.31□□□□□ -0.12
NIPBL-207ENST00000513819 KCNA4P22459 653 aa14.09□□□□□ -0.15
NIPBL-207ENST00000513819 MSH5O43196 834 aa14.06□□□□□ -0.16
NIPBL-207ENST00000513819 PPP4R3CPQ6ZMV5 832 aa13.95□□□□□ -0.18
NIPBL-207ENST00000513819 NCBP3Q53F19 620 aaKnown RBP13.65□□□□□ -0.22
NIPBL-207ENST00000513819 EHMT2Q96KQ7 1210 aa13.58□□□□□ -0.24
NIPBL-207ENST00000513819 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
NIPBL-207ENST00000513819 NPM3O75607 178 aaKnown RBP13.5□□□□□ -0.25
NIPBL-207ENST00000513819 SLC4A1APQ9BWU0 796 aaKnown RBP13.46□□□□□ -0.25
NIPBL-207ENST00000513819 CNKSR2Q8WXI2 1034 aa13.44□□□□□ -0.26
NIPBL-207ENST00000513819 MAPK8IP2Q13387 824 aaPredicted RBP13.38□□□□□ -0.27
NIPBL-207ENST00000513819 CSRNP3Q8WYN3 585 aa13.21□□□□□ -0.29
NIPBL-207ENST00000513819 RNF216Q9NWF9 866 aaPredicted RBP13.07□□□□□ -0.32
NIPBL-207ENST00000513819 DMRT2Q9Y5R5 561 aa13.04□□□□□ -0.32
NIPBL-207ENST00000513819 ZBTB22O15209 634 aa12.99□□□□□ -0.33
NIPBL-207ENST00000513819 DNAJC5BQ9UF47 199 aa12.96□□□□□ -0.33
NIPBL-207ENST00000513819 HOXD11P31277 338 aaPredicted RBP12.92□□□□□ -0.34
NIPBL-207ENST00000513819 FOXD4L1Q9NU39 408 aa12.81□□□□□ -0.36
NIPBL-207ENST00000513819 SLC4A2P04920 1241 aa12.66□□□□□ -0.38
NIPBL-207ENST00000513819 DCAF8L1A6NGE4 600 aa12.51□□□□□ -0.41
NIPBL-207ENST00000513819 MYCNP04198 464 aaPredicted RBP12.44□□□□□ -0.42
NIPBL-207ENST00000513819 CACNB1Q02641 598 aaPredicted RBP12.34□□□□□ -0.43
NIPBL-207ENST00000513819 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.34□□□□□ -0.43
NIPBL-207ENST00000513819 ATXN8OSP0DMR3 200 aa12.29□□□□□ -0.44
NIPBL-207ENST00000513819 U3KPZ7 1027 aaPredicted RBP12.2□□□□□ -0.46
NIPBL-207ENST00000513819 ATF5Q9Y2D1 282 aaPredicted RBP12.14□□□□□ -0.47
NIPBL-207ENST00000513819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.1□□□□□ -0.47
NIPBL-207ENST00000513819 HNRNPUL2Q1KMD3 747 aaKnown RBP12.1□□□□□ -0.47
NIPBL-207ENST00000513819 SAMD1Q6SPF0 538 aaPredicted RBP12.09□□□□□ -0.47
NIPBL-207ENST00000513819 FKBP8Q14318 412 aa11.93□□□□□ -0.5
NIPBL-207ENST00000513819 RNF39Q9H2S5 420 aa11.93□□□□□ -0.5
NIPBL-207ENST00000513819 APLP2Q06481 763 aa11.87□□□□□ -0.51
NIPBL-207ENST00000513819 ZNF219Q9P2Y4 722 aaPredicted RBP11.86□□□□□ -0.51
NIPBL-207ENST00000513819 SPINK5Q9NQ38 1064 aaPredicted RBP11.77□□□□□ -0.53
NIPBL-207ENST00000513819 C1QBPQ07021 282 aaKnown RBP11.74□□□□□ -0.53
NIPBL-207ENST00000513819 TRHP20396 242 aaPredicted RBP11.73□□□□□ -0.53
NIPBL-207ENST00000513819 CAPN15O75808 1086 aa11.68□□□□□ -0.54
NIPBL-207ENST00000513819 MKRN4PQ13434 485 aaPredicted RBP11.61□□□□□ -0.55
NIPBL-207ENST00000513819 POLA2Q14181 598 aa11.61□□□□□ -0.55
NIPBL-207ENST00000513819 RTN4Q9NQC3 1192 aaKnown RBP11.55□□□□□ -0.56
NIPBL-207ENST00000513819 FBLN2P98095 1184 aa11.53□□□□□ -0.56
NIPBL-207ENST00000513819 SPDYE4A6NLX3 237 aa11.52□□□□□ -0.57
NIPBL-207ENST00000513819 ABCB7O75027 752 aa11.52□□□□□ -0.57
NIPBL-207ENST00000513819 AMER1Q5JTC6 1135 aaPredicted RBP11.51□□□□□ -0.57
NIPBL-207ENST00000513819 ZBTB12Q9Y330 459 aaPredicted RBP11.38□□□□□ -0.59
NIPBL-207ENST00000513819 DSG3P32926 999 aa11.37□□□□□ -0.59
NIPBL-207ENST00000513819 PROM2Q8N271 834 aa11.35□□□□□ -0.59
NIPBL-207ENST00000513819 FBXO3Q9UK99 471 aa11.33□□□□□ -0.6
NIPBL-207ENST00000513819 POTEHQ6S545 545 aa11.26□□□□□ -0.61
NIPBL-207ENST00000513819 VASPP50552 380 aaPredicted RBP11.21□□□□□ -0.61
NIPBL-207ENST00000513819 OSCARQ8IYS5 282 aa11.21□□□□□ -0.61
NIPBL-207ENST00000513819 ZNF692Q9BU19 519 aaPredicted RBP11.18□□□□□ -0.62
NIPBL-207ENST00000513819 SPDYE2BA6NHP3 402 aa11.14□□□□□ -0.63
NIPBL-207ENST00000513819 SPDYE6P0CI01 402 aa11.14□□□□□ -0.63
NIPBL-207ENST00000513819 SPDYE2Q495Y8 402 aa11.14□□□□□ -0.63
NIPBL-207ENST00000513819 IFNLR1Q8IU57 520 aaPredicted RBP11.1□□□□□ -0.63
NIPBL-207ENST00000513819 SSUH2Q9Y2M2 353 aa11.1□□□□□ -0.63
NIPBL-207ENST00000513819 PABPN1Q86U42 306 aaKnown RBP eCLIP11.05□□□□□ -0.64
NIPBL-207ENST00000513819 SLC24A1O60721 1099 aa11.04□□□□□ -0.64
NIPBL-207ENST00000513819 STAG3Q9UJ98 1225 aa10.97□□□□□ -0.65
NIPBL-207ENST00000513819 KLHL34Q8N239 644 aa10.94□□□□□ -0.66
NIPBL-207ENST00000513819 PLCD3Q8N3E9 789 aa10.92□□□□□ -0.66
NIPBL-207ENST00000513819 MIER1Q8N108 512 aa10.89□□□□□ -0.67
NIPBL-207ENST00000513819 PKD2Q13563 968 aa10.88□□□□□ -0.67
NIPBL-207ENST00000513819 SPOCK2Q92563 424 aa10.87□□□□□ -0.67
NIPBL-207ENST00000513819 DCAF8L2P0C7V8 631 aa10.82□□□□□ -0.68
NIPBL-207ENST00000513819 RBM42Q9BTD8 480 aaKnown RBP10.78□□□□□ -0.68
NIPBL-207ENST00000513819 PLEKHG5O94827 1062 aa10.75□□□□□ -0.69
NIPBL-207ENST00000513819 AKT1S1Q96B36 256 aa10.75□□□□□ -0.69
NIPBL-207ENST00000513819 ECM2O94769 699 aaPredicted RBP10.74□□□□□ -0.69
NIPBL-207ENST00000513819 SPDYE1Q8NFV5 336 aaPredicted RBP10.71□□□□□ -0.69
NIPBL-207ENST00000513819 ZBTB47Q9UFB7 747 aaPredicted RBP10.71□□□□□ -0.69
NIPBL-207ENST00000513819 CLEC11AQ9Y240 323 aa10.7□□□□□ -0.7
NIPBL-207ENST00000513819 CIZ1Q9ULV3 898 aaPredicted RBP10.68□□□□□ -0.7
NIPBL-207ENST00000513819 REM2Q8IYK8 340 aaPredicted RBP10.67□□□□□ -0.7
NIPBL-207ENST00000513819 PLCB2Q00722 1185 aa10.65□□□□□ -0.7
NIPBL-207ENST00000513819 RGL2O15211 777 aa10.64□□□□□ -0.71
NIPBL-207ENST00000513819 PRR29P0C7W0 189 aa10.63□□□□□ -0.71
NIPBL-207ENST00000513819 CREBZFQ9NS37 354 aa10.6□□□□□ -0.71
NIPBL-207ENST00000513819 NPM1P06748 294 aaKnown RBP eCLIP10.57□□□□□ -0.72
NIPBL-207ENST00000513819 PITPNM1O00562 1244 aa10.56□□□□□ -0.72
NIPBL-207ENST00000513819 NUBP1P53384 320 aa10.56□□□□□ -0.72
NIPBL-207ENST00000513819 HAP1P54257 671 aaPredicted RBP10.54□□□□□ -0.72
NIPBL-207ENST00000513819 MNX1P50219 401 aaPredicted RBP10.53□□□□□ -0.72
NIPBL-207ENST00000513819 GSE1Q14687 1217 aa10.52□□□□□ -0.73
NIPBL-207ENST00000513819 DCAF8Q5TAQ9 597 aa10.51□□□□□ -0.73
NIPBL-207ENST00000513819 TRIM41Q8WV44 630 aa10.51□□□□□ -0.73
NIPBL-207ENST00000513819 BBXQ8WY36 941 aaPredicted RBP10.51□□□□□ -0.73
NIPBL-207ENST00000513819 CHRDL2Q6WN34 429 aa10.5□□□□□ -0.73
NIPBL-207ENST00000513819 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.49□□□□□ -0.73
NIPBL-207ENST00000513819 CHGAP10645 457 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms