RNA–Protein interactions for RNA: ENST00000512844.5

CHD1-209, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 848 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-209ENST00000512844 AEBP2Q6ZN18 517 aaPredicted RBP27.92■■■□□ 2.06
CHD1-209ENST00000512844 CHIC1Q5VXU3 224 aa27.46■■□□□ 1.99
CHD1-209ENST00000512844 PHF23Q9BUL5 403 aaPredicted RBP24.05■■□□□ 1.44
CHD1-209ENST00000512844 SENP3Q9H4L4 574 aaPredicted RBP23.88■■□□□ 1.41
CHD1-209ENST00000512844 PLPPR3Q6T4P5 718 aa22.43■■□□□ 1.18
CHD1-209ENST00000512844 FOXD1Q16676 465 aa22.02■■□□□ 1.12
CHD1-209ENST00000512844 ADRA2BP18089 450 aa21.26■□□□□ 0.99
CHD1-209ENST00000512844 PPP6R1Q9UPN7 881 aa21.2■□□□□ 0.98
CHD1-209ENST00000512844 PIAS4Q8N2W9 510 aaPredicted RBP20.92■□□□□ 0.94
CHD1-209ENST00000512844 POTEDQ86YR6 584 aa20.44■□□□□ 0.86
CHD1-209ENST00000512844 MSH5O43196 834 aa20.43■□□□□ 0.86
CHD1-209ENST00000512844 PPP4R3CPQ6ZMV5 832 aa19.73■□□□□ 0.75
CHD1-209ENST00000512844 SCAF1Q9H7N4 1312 aaKnown RBP19.65■□□□□ 0.74
CHD1-209ENST00000512844 NCBP3Q53F19 620 aaKnown RBP19.38■□□□□ 0.69
CHD1-209ENST00000512844 KCNA4P22459 653 aa19.32■□□□□ 0.68
CHD1-209ENST00000512844 MAPK8IP2Q13387 824 aaPredicted RBP19.22■□□□□ 0.67
CHD1-209ENST00000512844 CNKSR2Q8WXI2 1034 aa19.19■□□□□ 0.66
CHD1-209ENST00000512844 DMRT2Q9Y5R5 561 aa19.01■□□□□ 0.63
CHD1-209ENST00000512844 NPM3O75607 178 aaKnown RBP18.91■□□□□ 0.62
CHD1-209ENST00000512844 RNF216Q9NWF9 866 aaPredicted RBP18.77■□□□□ 0.6
CHD1-209ENST00000512844 HOXD11P31277 338 aaPredicted RBP18.62■□□□□ 0.57
CHD1-209ENST00000512844 SLC4A1APQ9BWU0 796 aaKnown RBP18.52■□□□□ 0.56
CHD1-209ENST00000512844 DCAF8L1A6NGE4 600 aa18.35■□□□□ 0.53
CHD1-209ENST00000512844 DNAJC5BQ9UF47 199 aa18.3■□□□□ 0.52
CHD1-209ENST00000512844 EHMT2Q96KQ7 1210 aa18.09■□□□□ 0.49
CHD1-209ENST00000512844 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.9■□□□□ 0.46
CHD1-209ENST00000512844 FOXD4L1Q9NU39 408 aa17.84■□□□□ 0.45
CHD1-209ENST00000512844 SLC4A2P04920 1241 aa17.77■□□□□ 0.44
CHD1-209ENST00000512844 CSRNP3Q8WYN3 585 aa17.71■□□□□ 0.43
CHD1-209ENST00000512844 ZBTB22O15209 634 aa17.68■□□□□ 0.42
CHD1-209ENST00000512844 MYCNP04198 464 aaPredicted RBP17.57■□□□□ 0.4
CHD1-209ENST00000512844 CACNB1Q02641 598 aaPredicted RBP17.5■□□□□ 0.39
CHD1-209ENST00000512844 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.48■□□□□ 0.39
CHD1-209ENST00000512844 HNRNPUL2Q1KMD3 747 aaKnown RBP17.48■□□□□ 0.39
CHD1-209ENST00000512844 U3KPZ7 1027 aaPredicted RBP17.47■□□□□ 0.39
CHD1-209ENST00000512844 RNF39Q9H2S5 420 aa17.43■□□□□ 0.38
CHD1-209ENST00000512844 SAMD1Q6SPF0 538 aaPredicted RBP17.38■□□□□ 0.37
CHD1-209ENST00000512844 APLP2Q06481 763 aa17.34■□□□□ 0.37
CHD1-209ENST00000512844 C1QBPQ07021 282 aaKnown RBP17.28■□□□□ 0.36
CHD1-209ENST00000512844 ATXN8OSP0DMR3 200 aa17.22■□□□□ 0.35
CHD1-209ENST00000512844 CAPN15O75808 1086 aa17.03■□□□□ 0.32
CHD1-209ENST00000512844 ZNF219Q9P2Y4 722 aaPredicted RBP16.98■□□□□ 0.31
CHD1-209ENST00000512844 SPINK5Q9NQ38 1064 aaPredicted RBP16.96■□□□□ 0.31
CHD1-209ENST00000512844 TRHP20396 242 aaPredicted RBP16.95■□□□□ 0.3
CHD1-209ENST00000512844 ATF5Q9Y2D1 282 aaPredicted RBP16.93■□□□□ 0.3
CHD1-209ENST00000512844 ABCB7O75027 752 aa16.65■□□□□ 0.26
CHD1-209ENST00000512844 POLA2Q14181 598 aa16.64■□□□□ 0.25
CHD1-209ENST00000512844 DSG3P32926 999 aa16.59■□□□□ 0.25
CHD1-209ENST00000512844 ZBTB12Q9Y330 459 aaPredicted RBP16.5■□□□□ 0.23
CHD1-209ENST00000512844 FBLN2P98095 1184 aa16.47■□□□□ 0.23
CHD1-209ENST00000512844 MKRN4PQ13434 485 aaPredicted RBP16.2■□□□□ 0.18
CHD1-209ENST00000512844 FKBP8Q14318 412 aa16.13■□□□□ 0.17
CHD1-209ENST00000512844 OSCARQ8IYS5 282 aa16.07■□□□□ 0.16
CHD1-209ENST00000512844 SPDYE4A6NLX3 237 aa16.04■□□□□ 0.16
CHD1-209ENST00000512844 SPDYE2BA6NHP3 402 aa15.98■□□□□ 0.15
CHD1-209ENST00000512844 SPDYE6P0CI01 402 aa15.98■□□□□ 0.15
CHD1-209ENST00000512844 SPDYE2Q495Y8 402 aa15.98■□□□□ 0.15
CHD1-209ENST00000512844 RBM42Q9BTD8 480 aaKnown RBP15.98■□□□□ 0.15
CHD1-209ENST00000512844 ZNF692Q9BU19 519 aaPredicted RBP15.95■□□□□ 0.14
CHD1-209ENST00000512844 POTEHQ6S545 545 aa15.92■□□□□ 0.14
CHD1-209ENST00000512844 SSUH2Q9Y2M2 353 aa15.77■□□□□ 0.12
CHD1-209ENST00000512844 AKT1S1Q96B36 256 aa15.72■□□□□ 0.11
CHD1-209ENST00000512844 PABPN1Q86U42 306 aaKnown RBP eCLIP15.71■□□□□ 0.11
CHD1-209ENST00000512844 PROM2Q8N271 834 aa15.63■□□□□ 0.09
CHD1-209ENST00000512844 FBXO3Q9UK99 471 aa15.63■□□□□ 0.09
CHD1-209ENST00000512844 STAG3Q9UJ98 1225 aa15.55■□□□□ 0.08
CHD1-209ENST00000512844 SPDYE1Q8NFV5 336 aaPredicted RBP15.53■□□□□ 0.08
CHD1-209ENST00000512844 REM2Q8IYK8 340 aaPredicted RBP15.52■□□□□ 0.08
CHD1-209ENST00000512844 CLEC11AQ9Y240 323 aa15.47■□□□□ 0.07
CHD1-209ENST00000512844 PITPNM1O00562 1244 aa15.34■□□□□ 0.05
CHD1-209ENST00000512844 PRR29P0C7W0 189 aa15.33■□□□□ 0.04
CHD1-209ENST00000512844 PLEKHG5O94827 1062 aa15.32■□□□□ 0.04
CHD1-209ENST00000512844 VASPP50552 380 aaPredicted RBP15.31■□□□□ 0.04
CHD1-209ENST00000512844 PLCD3Q8N3E9 789 aa15.28■□□□□ 0.04
CHD1-209ENST00000512844 MIER1Q8N108 512 aa15.25■□□□□ 0.03
CHD1-209ENST00000512844 CHRDL2Q6WN34 429 aa15.19■□□□□ 0.02
CHD1-209ENST00000512844 KLHL34Q8N239 644 aa15.16■□□□□ 0.02
CHD1-209ENST00000512844 ZBTB47Q9UFB7 747 aaPredicted RBP15.15■□□□□ 0.02
CHD1-209ENST00000512844 IFNLR1Q8IU57 520 aaPredicted RBP15.03■□□□□ -0
CHD1-209ENST00000512844 CREBZFQ9NS37 354 aa15.02■□□□□ -0
CHD1-209ENST00000512844 PRKAR2AP13861 404 aaKnown RBP15□□□□□ -0.01
CHD1-209ENST00000512844 FXR2P51116 673 aaKnown RBP eCLIP15□□□□□ -0.01
CHD1-209ENST00000512844 CHADLQ6NUI6 762 aa14.97□□□□□ -0.01
CHD1-209ENST00000512844 PIP4P2Q8N4L2 257 aa14.97□□□□□ -0.01
CHD1-209ENST00000512844 NPM1P06748 294 aaKnown RBP eCLIP14.96□□□□□ -0.01
CHD1-209ENST00000512844 SPOCK2Q92563 424 aa14.96□□□□□ -0.01
CHD1-209ENST00000512844 AMER1Q5JTC6 1135 aaPredicted RBP14.9□□□□□ -0.02
CHD1-209ENST00000512844 FARP1Q9Y4F1 1045 aaPredicted RBP14.87□□□□□ -0.03
CHD1-209ENST00000512844 MNX1P50219 401 aaPredicted RBP14.8□□□□□ -0.04
CHD1-209ENST00000512844 FAM212AQ96EL1 285 aa14.76□□□□□ -0.05
CHD1-209ENST00000512844 CIZ1Q9ULV3 898 aaPredicted RBP14.76□□□□□ -0.05
CHD1-209ENST00000512844 PAK3O75914 559 aaPredicted RBP14.74□□□□□ -0.05
CHD1-209ENST00000512844 GSE1Q14687 1217 aa14.73□□□□□ -0.05
CHD1-209ENST00000512844 DCAF8Q5TAQ9 597 aa14.72□□□□□ -0.05
CHD1-209ENST00000512844 RTN4Q9NQC3 1192 aaKnown RBP14.72□□□□□ -0.05
CHD1-209ENST00000512844 NUBP1P53384 320 aa14.71□□□□□ -0.05
CHD1-209ENST00000512844 SP7Q8TDD2 431 aaPredicted RBP14.67□□□□□ -0.06
CHD1-209ENST00000512844 RASEFQ8IZ41 740 aa14.65□□□□□ -0.06
CHD1-209ENST00000512844 TSPYL2Q9H2G4 693 aaPredicted RBP14.64□□□□□ -0.07
CHD1-209ENST00000512844 TRIM41Q8WV44 630 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 166.8 ms