RNA–Protein interactions for RNA: ENST00000511633.5

NEK1-207, Transcript of NIMA related kinase 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NEK1, Length 5,536 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-207ENST00000511633 DCAF8L2P0C7V8 631 aa16.11■□□□□ 0.17
NEK1-207ENST00000511633 NISCHQ9Y2I1 1504 aa15.48■□□□□ 0.07
NEK1-207ENST00000511633 SUPT5HO00267 1087 aaKnown RBP15.19■□□□□ 0.02
NEK1-207ENST00000511633 SHROOM4Q9ULL8 1493 aa15.04■□□□□ -0
NEK1-207ENST00000511633 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
NEK1-207ENST00000511633 FAM9AQ8IZU1 332 aaPredicted RBP14.34□□□□□ -0.11
NEK1-207ENST00000511633 APLP2Q06481 763 aa14.31□□□□□ -0.12
NEK1-207ENST00000511633 TTBK1Q5TCY1 1321 aaPredicted RBP14.22□□□□□ -0.13
NEK1-207ENST00000511633 RANGAP1P46060 587 aaPredicted RBP14.14□□□□□ -0.15
NEK1-207ENST00000511633 TRIM41Q8WV44 630 aa14.04□□□□□ -0.16
NEK1-207ENST00000511633 PCGF6Q9BYE7 350 aa14.01□□□□□ -0.17
NEK1-207ENST00000511633 ATP1B4Q9UN42 357 aaPredicted RBP13.97□□□□□ -0.17
NEK1-207ENST00000511633 PELP1Q8IZL8 1130 aaKnown RBP13.89□□□□□ -0.19
NEK1-207ENST00000511633 UBTFP17480 764 aaKnown RBP13.89□□□□□ -0.19
NEK1-207ENST00000511633 CCER1Q8TC90 406 aaPredicted RBP13.78□□□□□ -0.2
NEK1-207ENST00000511633 PPARGC1BQ86YN6 1023 aaKnown RBP13.69□□□□□ -0.22
NEK1-207ENST00000511633 ZEB1P37275 1124 aaPredicted RBP13.64□□□□□ -0.23
NEK1-207ENST00000511633 CENPBP07199 599 aaPredicted RBP13.53□□□□□ -0.24
NEK1-207ENST00000511633 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.49□□□□□ -0.25
NEK1-207ENST00000511633 HNRNPUL2Q1KMD3 747 aaKnown RBP13.49□□□□□ -0.25
NEK1-207ENST00000511633 ABCC9O60706 1549 aa13.49□□□□□ -0.25
NEK1-207ENST00000511633 ITGAEP38570 1179 aa13.47□□□□□ -0.25
NEK1-207ENST00000511633 LOC105371045A0A1W2PR82 267 aa13.45□□□□□ -0.26
NEK1-207ENST00000511633 YTHDC1Q96MU7 727 aaKnown RBP13.44□□□□□ -0.26
NEK1-207ENST00000511633 PABPN1Q86U42 306 aaKnown RBP eCLIP13.44□□□□□ -0.26
NEK1-207ENST00000511633 MYT1LQ9UL68 1186 aa13.43□□□□□ -0.26
NEK1-207ENST00000511633 TRIM26Q12899 539 aaPredicted RBP13.41□□□□□ -0.26
NEK1-207ENST00000511633 CHIC1Q5VXU3 224 aa13.41□□□□□ -0.26
NEK1-207ENST00000511633 ERICH6Q7L0X2 663 aa13.36□□□□□ -0.27
NEK1-207ENST00000511633 NEFLP07196 543 aa13.31□□□□□ -0.28
NEK1-207ENST00000511633 POLR3GLQ9BT43 218 aa13.29□□□□□ -0.28
NEK1-207ENST00000511633 CNGB1Q14028 1251 aaPredicted RBP13.19□□□□□ -0.3
NEK1-207ENST00000511633 HRCP23327 699 aa13.17□□□□□ -0.3
NEK1-207ENST00000511633 FAM50AQ14320 339 aaKnown RBP13.12□□□□□ -0.31
NEK1-207ENST00000511633 FBLN2P98095 1184 aa13.06□□□□□ -0.32
NEK1-207ENST00000511633 SLC4A1APQ9BWU0 796 aaKnown RBP13.06□□□□□ -0.32
NEK1-207ENST00000511633 TRIM52Q96A61 297 aa13.03□□□□□ -0.32
NEK1-207ENST00000511633 NEUROD1Q13562 356 aa12.97□□□□□ -0.33
NEK1-207ENST00000511633 SCRIBQ14160 1630 aa12.93□□□□□ -0.34
NEK1-207ENST00000511633 P3H3Q8IVL6 736 aa12.93□□□□□ -0.34
NEK1-207ENST00000511633 ARID3CA6NKF2 412 aa12.93□□□□□ -0.34
NEK1-207ENST00000511633 DIEXFQ68CQ4 756 aaKnown RBP12.9□□□□□ -0.35
NEK1-207ENST00000511633 DAXXQ9UER7 740 aaPredicted RBP12.89□□□□□ -0.35
NEK1-207ENST00000511633 ZNF326Q5BKZ1 582 aaKnown RBP12.89□□□□□ -0.35
NEK1-207ENST00000511633 CSRNP3Q8WYN3 585 aa12.84□□□□□ -0.35
NEK1-207ENST00000511633 ZCCHC6Q5VYS8 1495 aaKnown RBP12.79□□□□□ -0.36
NEK1-207ENST00000511633 ZNF777Q9ULD5 760 aaPredicted RBP12.77□□□□□ -0.36
NEK1-207ENST00000511633 CLSPNQ9HAW4 1339 aa12.73□□□□□ -0.37
NEK1-207ENST00000511633 ANP32CO43423 234 aa12.7□□□□□ -0.38
NEK1-207ENST00000511633 BCANQ96GW7 911 aa12.7□□□□□ -0.38
NEK1-207ENST00000511633 CCDC180Q9P1Z9 1646 aa12.67□□□□□ -0.38
NEK1-207ENST00000511633 CDK11AQ9UQ88 783 aaPredicted RBP12.66□□□□□ -0.38
NEK1-207ENST00000511633 ZNF316A6NFI3 1004 aaPredicted RBP12.63□□□□□ -0.39
NEK1-207ENST00000511633 SLC24A1O60721 1099 aa12.6□□□□□ -0.39
NEK1-207ENST00000511633 MYT1Q01538 1121 aa12.57□□□□□ -0.4
NEK1-207ENST00000511633 PLPPR3Q6T4P5 718 aa12.56□□□□□ -0.4
NEK1-207ENST00000511633 ESF1Q9H501 851 aaKnown RBP12.55□□□□□ -0.4
NEK1-207ENST00000511633 CHGAP10645 457 aaKnown RBP12.55□□□□□ -0.4
NEK1-207ENST00000511633 RB1CC1Q8TDY2 1594 aa12.54□□□□□ -0.4
NEK1-207ENST00000511633 NPM1P06748 294 aaKnown RBP eCLIP12.54□□□□□ -0.4
NEK1-207ENST00000511633 BCL11AQ9H165 835 aa12.54□□□□□ -0.4
NEK1-207ENST00000511633 GTF3C3Q9Y5Q9 886 aa12.54□□□□□ -0.4
NEK1-207ENST00000511633 CANXP27824 592 aaKnown RBP12.53□□□□□ -0.4
NEK1-207ENST00000511633 CHIC2Q9UKJ5 165 aa12.52□□□□□ -0.4
NEK1-207ENST00000511633 RTL5Q5HYW3 569 aaPredicted RBP12.51□□□□□ -0.41
NEK1-207ENST00000511633 ZBTB47Q9UFB7 747 aaPredicted RBP12.51□□□□□ -0.41
NEK1-207ENST00000511633 NEFMP07197 916 aa12.51□□□□□ -0.41
NEK1-207ENST00000511633 STAG3Q9UJ98 1225 aa12.5□□□□□ -0.41
NEK1-207ENST00000511633 TONSLQ96HA7 1378 aa12.49□□□□□ -0.41
NEK1-207ENST00000511633 CHMP7Q8WUX9 453 aaPredicted RBP12.49□□□□□ -0.41
NEK1-207ENST00000511633 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.48□□□□□ -0.41
NEK1-207ENST00000511633 MTUS2Q5JR59 1369 aa12.42□□□□□ -0.42
NEK1-207ENST00000511633 DCAF1Q9Y4B6 1507 aa12.41□□□□□ -0.42
NEK1-207ENST00000511633 RSF1Q96T23 1441 aaPredicted RBP12.41□□□□□ -0.42
NEK1-207ENST00000511633 CLIP1P30622 1438 aa12.39□□□□□ -0.43
NEK1-207ENST00000511633 TSPY4P0CV99 314 aa12.39□□□□□ -0.43
NEK1-207ENST00000511633 TSPY10P0CW01 314 aa12.39□□□□□ -0.43
NEK1-207ENST00000511633 DDX10Q13206 875 aaKnown RBP12.38□□□□□ -0.43
NEK1-207ENST00000511633 NACADO15069 1562 aa12.37□□□□□ -0.43
NEK1-207ENST00000511633 BAZ1BQ9UIG0 1483 aaKnown RBP12.37□□□□□ -0.43
NEK1-207ENST00000511633 KDM2AQ9Y2K7 1162 aa12.37□□□□□ -0.43
NEK1-207ENST00000511633 KCNH8Q96L42 1107 aa12.35□□□□□ -0.43
NEK1-207ENST00000511633 FAM9BQ8IZU0 186 aa12.35□□□□□ -0.43
NEK1-207ENST00000511633 ACIN1Q9UKV3 1341 aaKnown RBP12.33□□□□□ -0.44
NEK1-207ENST00000511633 SALL2Q9Y467 1007 aaPredicted RBP12.33□□□□□ -0.44
NEK1-207ENST00000511633 RRP7BPQ9NSQ0 103 aa12.33□□□□□ -0.44
NEK1-207ENST00000511633 SENP3Q9H4L4 574 aaPredicted RBP12.32□□□□□ -0.44
NEK1-207ENST00000511633 HNRNPUQ00839 825 aaKnown RBP eCLIP12.32□□□□□ -0.44
NEK1-207ENST00000511633 WRNQ14191 1432 aaPredicted RBP eCLIP12.31□□□□□ -0.44
NEK1-207ENST00000511633 GOLGA3Q08378 1498 aa12.3□□□□□ -0.44
NEK1-207ENST00000511633 MYO15BQ96JP2 1530 aa12.29□□□□□ -0.44
NEK1-207ENST00000511633 HIRIP3Q9BW71 556 aaPredicted RBP12.28□□□□□ -0.44
NEK1-207ENST00000511633 CEP162Q5TB80 1403 aa12.28□□□□□ -0.44
NEK1-207ENST00000511633 PLEKHD1A6NEE1 506 aa12.27□□□□□ -0.45
NEK1-207ENST00000511633 FKBP8Q14318 412 aa12.27□□□□□ -0.45
NEK1-207ENST00000511633 NPM2Q86SE8 214 aaKnown RBP12.27□□□□□ -0.45
NEK1-207ENST00000511633 EEA1Q15075 1411 aa12.25□□□□□ -0.45
NEK1-207ENST00000511633 TMC1Q8TDI8 760 aa12.25□□□□□ -0.45
NEK1-207ENST00000511633 KIF27Q86VH2 1401 aa12.24□□□□□ -0.45
NEK1-207ENST00000511633 ERCC6Q03468 1493 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms