RNA–Protein interactions for RNA: ENST00000510877.5

LIN54-210, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best)

Gene LIN54, Length 4,507 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-210ENST00000510877 NISCHQ9Y2I1 1504 aa25.31■■□□□ 1.64
LIN54-210ENST00000510877 DCAF8L2P0C7V8 631 aa24.64■■□□□ 1.53
LIN54-210ENST00000510877 ABCC9O60706 1549 aa23.07■■□□□ 1.28
LIN54-210ENST00000510877 PABPN1Q86U42 306 aaKnown RBP eCLIP22.25■■□□□ 1.15
LIN54-210ENST00000510877 SHROOM4Q9ULL8 1493 aa22.12■■□□□ 1.13
LIN54-210ENST00000510877 CCDC180Q9P1Z9 1646 aa21.69■■□□□ 1.06
LIN54-210ENST00000510877 SUPT5HO00267 1087 aaKnown RBP21.57■■□□□ 1.04
LIN54-210ENST00000510877 RB1CC1Q8TDY2 1594 aa21.48■■□□□ 1.03
LIN54-210ENST00000510877 NACADO15069 1562 aa21.17■□□□□ 0.98
LIN54-210ENST00000510877 SCRIBQ14160 1630 aa21.08■□□□□ 0.96
LIN54-210ENST00000510877 FAM9AQ8IZU1 332 aaPredicted RBP21.01■□□□□ 0.95
LIN54-210ENST00000510877 ZCCHC6Q5VYS8 1495 aaKnown RBP20.79■□□□□ 0.92
LIN54-210ENST00000510877 FBLN2P98095 1184 aa20.66■□□□□ 0.9
LIN54-210ENST00000510877 ERCC6Q03468 1493 aa20.61■□□□□ 0.89
LIN54-210ENST00000510877 CECR2Q9BXF3 1484 aa20.57■□□□□ 0.88
LIN54-210ENST00000510877 DNAJC5BQ9UF47 199 aa20.53■□□□□ 0.88
LIN54-210ENST00000510877 EHMT2Q96KQ7 1210 aa20.47■□□□□ 0.87
LIN54-210ENST00000510877 TTBK1Q5TCY1 1321 aaPredicted RBP20.43■□□□□ 0.86
LIN54-210ENST00000510877 MYO15BQ96JP2 1530 aa20.31■□□□□ 0.84
LIN54-210ENST00000510877 DCAF1Q9Y4B6 1507 aa20.3■□□□□ 0.84
LIN54-210ENST00000510877 RANGAP1P46060 587 aaPredicted RBP20.29■□□□□ 0.84
LIN54-210ENST00000510877 ATP1B4Q9UN42 357 aaPredicted RBP20.22■□□□□ 0.83
LIN54-210ENST00000510877 BAZ1BQ9UIG0 1483 aaKnown RBP20.22■□□□□ 0.83
LIN54-210ENST00000510877 TRIM41Q8WV44 630 aa20.21■□□□□ 0.83
LIN54-210ENST00000510877 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.13■□□□□ 0.81
LIN54-210ENST00000510877 HNRNPUL2Q1KMD3 747 aaKnown RBP20.13■□□□□ 0.81
LIN54-210ENST00000510877 NPM1P06748 294 aaKnown RBP eCLIP20.04■□□□□ 0.8
LIN54-210ENST00000510877 CHMP7Q8WUX9 453 aaPredicted RBP20.03■□□□□ 0.8
LIN54-210ENST00000510877 PDS5BQ9NTI5 1447 aa20.01■□□□□ 0.79
LIN54-210ENST00000510877 TRHP20396 242 aaPredicted RBP20.01■□□□□ 0.79
LIN54-210ENST00000510877 MYT1LQ9UL68 1186 aa20.01■□□□□ 0.79
LIN54-210ENST00000510877 APLP2Q06481 763 aa19.99■□□□□ 0.79
LIN54-210ENST00000510877 UBTFP17480 764 aaKnown RBP19.97■□□□□ 0.79
LIN54-210ENST00000510877 BAZ1AQ9NRL2 1556 aaPredicted RBP19.92■□□□□ 0.78
LIN54-210ENST00000510877 EIF4G1Q04637 1599 aaKnown RBP19.9■□□□□ 0.78
LIN54-210ENST00000510877 SMARCA2P51531 1590 aa19.89■□□□□ 0.78
LIN54-210ENST00000510877 CC2D2AQ9P2K1 1620 aa19.82■□□□□ 0.76
LIN54-210ENST00000510877 OSCARQ8IYS5 282 aa19.74■□□□□ 0.75
LIN54-210ENST00000510877 ATAD2BQ9ULI0 1458 aa19.73■□□□□ 0.75
LIN54-210ENST00000510877 CADPSQ9ULU8 1353 aa19.7■□□□□ 0.74
LIN54-210ENST00000510877 RSF1Q96T23 1441 aaPredicted RBP19.61■□□□□ 0.73
LIN54-210ENST00000510877 NCAPD3P42695 1498 aa19.59■□□□□ 0.73
LIN54-210ENST00000510877 BICRAQ9NZM4 1560 aa19.57■□□□□ 0.72
LIN54-210ENST00000510877 CYB5RLQ6IPT4 315 aa19.55■□□□□ 0.72
LIN54-210ENST00000510877 CEP164Q9UPV0 1460 aa19.52■□□□□ 0.72
LIN54-210ENST00000510877 MROH2BQ7Z745 1585 aa19.5■□□□□ 0.71
LIN54-210ENST00000510877 AEBP2Q6ZN18 517 aaPredicted RBP19.49■□□□□ 0.71
LIN54-210ENST00000510877 ARID3CA6NKF2 412 aa19.46■□□□□ 0.71
LIN54-210ENST00000510877 SMARCA4P51532 1647 aa19.4■□□□□ 0.7
LIN54-210ENST00000510877 FANCD2Q9BXW9 1451 aa19.38■□□□□ 0.69
LIN54-210ENST00000510877 P3H3Q8IVL6 736 aa19.38■□□□□ 0.69
LIN54-210ENST00000510877 ESF1Q9H501 851 aaKnown RBP19.35■□□□□ 0.69
LIN54-210ENST00000510877 PLPPR3Q6T4P5 718 aa19.34■□□□□ 0.69
LIN54-210ENST00000510877 TDRD9Q8NDG6 1382 aaKnown RBP19.34■□□□□ 0.69
LIN54-210ENST00000510877 NESP48681 1621 aa19.33■□□□□ 0.69
LIN54-210ENST00000510877 CHIC1Q5VXU3 224 aa19.32■□□□□ 0.68
LIN54-210ENST00000510877 SOGA1O94964 1423 aa19.3■□□□□ 0.68
LIN54-210ENST00000510877 CDK11AQ9UQ88 783 aaPredicted RBP19.24■□□□□ 0.67
LIN54-210ENST00000510877 KCNH8Q96L42 1107 aa19.23■□□□□ 0.67
LIN54-210ENST00000510877 WRNQ14191 1432 aaPredicted RBP eCLIP19.22■□□□□ 0.67
LIN54-210ENST00000510877 MRC2Q9UBG0 1479 aa19.2■□□□□ 0.66
LIN54-210ENST00000510877 MYT1Q01538 1121 aa19.19■□□□□ 0.66
LIN54-210ENST00000510877 PELP1Q8IZL8 1130 aaKnown RBP19.19■□□□□ 0.66
LIN54-210ENST00000510877 CCDC88BA6NC98 1476 aa19.19■□□□□ 0.66
LIN54-210ENST00000510877 ABCC8Q09428 1581 aa19.17■□□□□ 0.66
LIN54-210ENST00000510877 CSRNP3Q8WYN3 585 aa19.16■□□□□ 0.66
LIN54-210ENST00000510877 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
LIN54-210ENST00000510877 ARID4BQ4LE39 1312 aaPredicted RBP19.14■□□□□ 0.65
LIN54-210ENST00000510877 UNC13AQ9UPW8 1703 aa19.13■□□□□ 0.65
LIN54-210ENST00000510877 DNAJC5Q9H3Z4 198 aa19.13■□□□□ 0.65
LIN54-210ENST00000510877 WIZO95785 1651 aa19.11■□□□□ 0.65
LIN54-210ENST00000510877 TOP2AP11388 1531 aaKnown RBP19.1■□□□□ 0.65
LIN54-210ENST00000510877 CUX2O14529 1486 aa19.07■□□□□ 0.64
LIN54-210ENST00000510877 KIF27Q86VH2 1401 aa19.07■□□□□ 0.64
LIN54-210ENST00000510877 ZNF777Q9ULD5 760 aaPredicted RBP19.03■□□□□ 0.64
LIN54-210ENST00000510877 LAMC3Q9Y6N6 1575 aa19■□□□□ 0.63
LIN54-210ENST00000510877 JPH4Q96JJ6 628 aa18.99■□□□□ 0.63
LIN54-210ENST00000510877 PLEKHD1A6NEE1 506 aa18.98■□□□□ 0.63
LIN54-210ENST00000510877 CARMIL2Q6F5E8 1435 aa18.95■□□□□ 0.62
LIN54-210ENST00000510877 AQRO60306 1485 aaKnown RBP eCLIP18.94■□□□□ 0.62
LIN54-210ENST00000510877 CFTRP13569 1480 aa18.92■□□□□ 0.62
LIN54-210ENST00000510877 IFT140Q96RY7 1462 aa18.92■□□□□ 0.62
LIN54-210ENST00000510877 FAM69CQ0P6D2 419 aa18.9■□□□□ 0.62
LIN54-210ENST00000510877 BCANQ96GW7 911 aa18.88■□□□□ 0.61
LIN54-210ENST00000510877 CARMIL1Q5VZK9 1371 aa18.87■□□□□ 0.61
LIN54-210ENST00000510877 ITGAEP38570 1179 aa18.87■□□□□ 0.61
LIN54-210ENST00000510877 RAD54L2Q9Y4B4 1467 aa18.81■□□□□ 0.6
LIN54-210ENST00000510877 GAPVD1Q14C86 1478 aa18.79■□□□□ 0.6
LIN54-210ENST00000510877 STAG3Q9UJ98 1225 aa18.77■□□□□ 0.59
LIN54-210ENST00000510877 FGD5Q6ZNL6 1462 aa18.76■□□□□ 0.59
LIN54-210ENST00000510877 GRIN2BQ13224 1484 aa18.74■□□□□ 0.59
LIN54-210ENST00000510877 MLECQ14165 292 aa18.73■□□□□ 0.59
LIN54-210ENST00000510877 FAM50AQ14320 339 aaKnown RBP18.72■□□□□ 0.59
LIN54-210ENST00000510877 PTPRGP23470 1445 aa18.71■□□□□ 0.59
LIN54-210ENST00000510877 TOPBP1Q92547 1522 aa18.7■□□□□ 0.58
LIN54-210ENST00000510877 PPARGC1BQ86YN6 1023 aaKnown RBP18.65■□□□□ 0.58
LIN54-210ENST00000510877 LOC105371045A0A1W2PR82 267 aa18.64■□□□□ 0.58
LIN54-210ENST00000510877 TSPY4P0CV99 314 aa18.63■□□□□ 0.57
LIN54-210ENST00000510877 TSPY10P0CW01 314 aa18.63■□□□□ 0.57
LIN54-210ENST00000510877 SNAPC4Q5SXM2 1469 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms