RNA–Protein interactions for RNA: ENST00000510599.5

UBE2D3-230, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 484 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-230ENST00000510599 AEBP2Q6ZN18 517 aaPredicted RBP25.49■■□□□ 1.67
UBE2D3-230ENST00000510599 CHIC1Q5VXU3 224 aa24.28■■□□□ 1.48
UBE2D3-230ENST00000510599 SENP3Q9H4L4 574 aaPredicted RBP21.85■■□□□ 1.09
UBE2D3-230ENST00000510599 PHF23Q9BUL5 403 aaPredicted RBP21.51■■□□□ 1.03
UBE2D3-230ENST00000510599 FOXD1Q16676 465 aa20.3■□□□□ 0.84
UBE2D3-230ENST00000510599 PLPPR3Q6T4P5 718 aa19.44■□□□□ 0.7
UBE2D3-230ENST00000510599 MSH5O43196 834 aa19.08■□□□□ 0.64
UBE2D3-230ENST00000510599 PIAS4Q8N2W9 510 aaPredicted RBP19.02■□□□□ 0.64
UBE2D3-230ENST00000510599 PPP6R1Q9UPN7 881 aa18.93■□□□□ 0.62
UBE2D3-230ENST00000510599 ADRA2BP18089 450 aa18.9■□□□□ 0.62
UBE2D3-230ENST00000510599 POTEDQ86YR6 584 aa18.54■□□□□ 0.56
UBE2D3-230ENST00000510599 SCAF1Q9H7N4 1312 aaKnown RBP17.4■□□□□ 0.38
UBE2D3-230ENST00000510599 MAPK8IP2Q13387 824 aaPredicted RBP17.34■□□□□ 0.37
UBE2D3-230ENST00000510599 DMRT2Q9Y5R5 561 aa17.3■□□□□ 0.36
UBE2D3-230ENST00000510599 PPP4R3CPQ6ZMV5 832 aa17■□□□□ 0.31
UBE2D3-230ENST00000510599 CNKSR2Q8WXI2 1034 aa16.71■□□□□ 0.27
UBE2D3-230ENST00000510599 HOXD11P31277 338 aaPredicted RBP16.66■□□□□ 0.26
UBE2D3-230ENST00000510599 DCAF8L1A6NGE4 600 aa16.62■□□□□ 0.25
UBE2D3-230ENST00000510599 RNF216Q9NWF9 866 aaPredicted RBP16.56■□□□□ 0.24
UBE2D3-230ENST00000510599 NCBP3Q53F19 620 aaKnown RBP16.41■□□□□ 0.22
UBE2D3-230ENST00000510599 CACNB1Q02641 598 aaPredicted RBP16.34■□□□□ 0.21
UBE2D3-230ENST00000510599 RNF39Q9H2S5 420 aa16.23■□□□□ 0.19
UBE2D3-230ENST00000510599 DNAJC5BQ9UF47 199 aa16.12■□□□□ 0.17
UBE2D3-230ENST00000510599 NPM3O75607 178 aaKnown RBP16.11■□□□□ 0.17
UBE2D3-230ENST00000510599 C1QBPQ07021 282 aaKnown RBP16.03■□□□□ 0.16
UBE2D3-230ENST00000510599 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.9■□□□□ 0.14
UBE2D3-230ENST00000510599 KCNA4P22459 653 aa15.78■□□□□ 0.12
UBE2D3-230ENST00000510599 U3KPZ7 1027 aaPredicted RBP15.53■□□□□ 0.08
UBE2D3-230ENST00000510599 SLC4A2P04920 1241 aa15.35■□□□□ 0.05
UBE2D3-230ENST00000510599 CAPN15O75808 1086 aa15.32■□□□□ 0.04
UBE2D3-230ENST00000510599 SPINK5Q9NQ38 1064 aaPredicted RBP15.29■□□□□ 0.04
UBE2D3-230ENST00000510599 APLP2Q06481 763 aa15.22■□□□□ 0.03
UBE2D3-230ENST00000510599 DSG3P32926 999 aa15.19■□□□□ 0.02
UBE2D3-230ENST00000510599 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.18■□□□□ 0.02
UBE2D3-230ENST00000510599 HNRNPUL2Q1KMD3 747 aaKnown RBP15.18■□□□□ 0.02
UBE2D3-230ENST00000510599 ZNF219Q9P2Y4 722 aaPredicted RBP15.08■□□□□ 0
UBE2D3-230ENST00000510599 SAMD1Q6SPF0 538 aaPredicted RBP15.07■□□□□ 0
UBE2D3-230ENST00000510599 TRHP20396 242 aaPredicted RBP15.06■□□□□ 0
UBE2D3-230ENST00000510599 MYCNP04198 464 aaPredicted RBP14.96□□□□□ -0.01
UBE2D3-230ENST00000510599 SLC4A1APQ9BWU0 796 aaKnown RBP14.94□□□□□ -0.02
UBE2D3-230ENST00000510599 ABCB7O75027 752 aa14.93□□□□□ -0.02
UBE2D3-230ENST00000510599 FOXD4L1Q9NU39 408 aa14.79□□□□□ -0.04
UBE2D3-230ENST00000510599 POLA2Q14181 598 aa14.64□□□□□ -0.07
UBE2D3-230ENST00000510599 RBM42Q9BTD8 480 aaKnown RBP14.58□□□□□ -0.08
UBE2D3-230ENST00000510599 POTEHQ6S545 545 aa14.56□□□□□ -0.08
UBE2D3-230ENST00000510599 ATF5Q9Y2D1 282 aaPredicted RBP14.51□□□□□ -0.09
UBE2D3-230ENST00000510599 ZBTB22O15209 634 aa14.48□□□□□ -0.09
UBE2D3-230ENST00000510599 ZBTB12Q9Y330 459 aaPredicted RBP14.43□□□□□ -0.1
UBE2D3-230ENST00000510599 ATXN8OSP0DMR3 200 aa14.34□□□□□ -0.11
UBE2D3-230ENST00000510599 AKT1S1Q96B36 256 aa14.21□□□□□ -0.13
UBE2D3-230ENST00000510599 CHRDL2Q6WN34 429 aa14.2□□□□□ -0.14
UBE2D3-230ENST00000510599 OSCARQ8IYS5 282 aa14.19□□□□□ -0.14
UBE2D3-230ENST00000510599 FBLN2P98095 1184 aa14.06□□□□□ -0.16
UBE2D3-230ENST00000510599 REM2Q8IYK8 340 aaPredicted RBP14.03□□□□□ -0.16
UBE2D3-230ENST00000510599 SPDYE2BA6NHP3 402 aa13.94□□□□□ -0.18
UBE2D3-230ENST00000510599 SPDYE6P0CI01 402 aa13.94□□□□□ -0.18
UBE2D3-230ENST00000510599 SPDYE2Q495Y8 402 aa13.94□□□□□ -0.18
UBE2D3-230ENST00000510599 PITPNM1O00562 1244 aa13.9□□□□□ -0.18
UBE2D3-230ENST00000510599 MKRN4PQ13434 485 aaPredicted RBP13.86□□□□□ -0.19
UBE2D3-230ENST00000510599 PIP4P2Q8N4L2 257 aa13.85□□□□□ -0.19
UBE2D3-230ENST00000510599 CSRNP3Q8WYN3 585 aa13.83□□□□□ -0.2
UBE2D3-230ENST00000510599 FXR2P51116 673 aaKnown RBP eCLIP13.76□□□□□ -0.21
UBE2D3-230ENST00000510599 ZNF692Q9BU19 519 aaPredicted RBP13.76□□□□□ -0.21
UBE2D3-230ENST00000510599 SSUH2Q9Y2M2 353 aa13.73□□□□□ -0.21
UBE2D3-230ENST00000510599 SPDYE1Q8NFV5 336 aaPredicted RBP13.71□□□□□ -0.21
UBE2D3-230ENST00000510599 EHMT2Q96KQ7 1210 aa13.7□□□□□ -0.22
UBE2D3-230ENST00000510599 CLEC11AQ9Y240 323 aa13.67□□□□□ -0.22
UBE2D3-230ENST00000510599 SP7Q8TDD2 431 aaPredicted RBP13.66□□□□□ -0.22
UBE2D3-230ENST00000510599 HAX1O00165 279 aa13.61□□□□□ -0.23
UBE2D3-230ENST00000510599 PRKAR2AP13861 404 aaKnown RBP13.55□□□□□ -0.24
UBE2D3-230ENST00000510599 PABPN1Q86U42 306 aaKnown RBP eCLIP13.55□□□□□ -0.24
UBE2D3-230ENST00000510599 PRR29P0C7W0 189 aa13.45□□□□□ -0.26
UBE2D3-230ENST00000510599 CHADLQ6NUI6 762 aa13.37□□□□□ -0.27
UBE2D3-230ENST00000510599 EVX2Q03828 476 aa13.36□□□□□ -0.27
UBE2D3-230ENST00000510599 C19orf67A6NJJ6 358 aa13.33□□□□□ -0.28
UBE2D3-230ENST00000510599 SPDYE4A6NLX3 237 aa13.26□□□□□ -0.29
UBE2D3-230ENST00000510599 STAG3Q9UJ98 1225 aa13.23□□□□□ -0.29
UBE2D3-230ENST00000510599 FARP1Q9Y4F1 1045 aaPredicted RBP13.19□□□□□ -0.3
UBE2D3-230ENST00000510599 CD44P16070 742 aaKnown RBP13.13□□□□□ -0.31
UBE2D3-230ENST00000510599 GABBR2O75899 941 aa13.12□□□□□ -0.31
UBE2D3-230ENST00000510599 CREBZFQ9NS37 354 aa13.07□□□□□ -0.32
UBE2D3-230ENST00000510599 CLCN6P51797 869 aa13□□□□□ -0.33
UBE2D3-230ENST00000510599 ZRANB1Q9UGI0 708 aa12.94□□□□□ -0.34
UBE2D3-230ENST00000510599 ZNF579Q8NAF0 562 aaKnown RBP12.93□□□□□ -0.34
UBE2D3-230ENST00000510599 PROM2Q8N271 834 aa12.92□□□□□ -0.34
UBE2D3-230ENST00000510599 NPM1P06748 294 aaKnown RBP eCLIP12.91□□□□□ -0.34
UBE2D3-230ENST00000510599 PAK3O75914 559 aaPredicted RBP12.9□□□□□ -0.34
UBE2D3-230ENST00000510599 MNX1P50219 401 aaPredicted RBP12.83□□□□□ -0.36
UBE2D3-230ENST00000510599 DCBLD2Q96PD2 775 aa12.82□□□□□ -0.36
UBE2D3-230ENST00000510599 POTEIP0CG38 1075 aa12.8□□□□□ -0.36
UBE2D3-230ENST00000510599 LHX8Q68G74 356 aa12.8□□□□□ -0.36
UBE2D3-230ENST00000510599 GALR2O43603 387 aaPredicted RBP12.74□□□□□ -0.37
UBE2D3-230ENST00000510599 PLEKHG5O94827 1062 aa12.73□□□□□ -0.37
UBE2D3-230ENST00000510599 PHF12Q96QT6 1004 aa12.73□□□□□ -0.37
UBE2D3-230ENST00000510599 MIER1Q8N108 512 aa12.65□□□□□ -0.38
UBE2D3-230ENST00000510599 TSPYL2Q9H2G4 693 aaPredicted RBP12.62□□□□□ -0.39
UBE2D3-230ENST00000510599 FKBP8Q14318 412 aa12.6□□□□□ -0.39
UBE2D3-230ENST00000510599 PLCD3Q8N3E9 789 aa12.58□□□□□ -0.4
UBE2D3-230ENST00000510599 MS4A3Q96HJ5 214 aa12.57□□□□□ -0.4
UBE2D3-230ENST00000510599 CCDC61Q9Y6R9 512 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms