RNA–Protein interactions for RNA: ENST00000508573.1

SMARCA5-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5, humanhuman

TSL 2

Gene SMARCA5, Length 363 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA5-202ENST00000508573 AEBP2Q6ZN18 517 aaPredicted RBP23.11■■□□□ 1.29
SMARCA5-202ENST00000508573 CHIC1Q5VXU3 224 aa21.95■■□□□ 1.1
SMARCA5-202ENST00000508573 SENP3Q9H4L4 574 aaPredicted RBP19.7■□□□□ 0.74
SMARCA5-202ENST00000508573 PHF23Q9BUL5 403 aaPredicted RBP19.51■□□□□ 0.71
SMARCA5-202ENST00000508573 FOXD1Q16676 465 aa18.39■□□□□ 0.53
SMARCA5-202ENST00000508573 PLPPR3Q6T4P5 718 aa17.55■□□□□ 0.4
SMARCA5-202ENST00000508573 PPP6R1Q9UPN7 881 aa17.23■□□□□ 0.35
SMARCA5-202ENST00000508573 ADRA2BP18089 450 aa17.2■□□□□ 0.34
SMARCA5-202ENST00000508573 PIAS4Q8N2W9 510 aaPredicted RBP17.19■□□□□ 0.34
SMARCA5-202ENST00000508573 MSH5O43196 834 aa17.18■□□□□ 0.34
SMARCA5-202ENST00000508573 POTEDQ86YR6 584 aa16.78■□□□□ 0.28
SMARCA5-202ENST00000508573 MAPK8IP2Q13387 824 aaPredicted RBP15.81■□□□□ 0.12
SMARCA5-202ENST00000508573 SCAF1Q9H7N4 1312 aaKnown RBP15.72■□□□□ 0.11
SMARCA5-202ENST00000508573 DMRT2Q9Y5R5 561 aa15.62■□□□□ 0.09
SMARCA5-202ENST00000508573 PPP4R3CPQ6ZMV5 832 aa15.42■□□□□ 0.06
SMARCA5-202ENST00000508573 DCAF8L1A6NGE4 600 aa15.1■□□□□ 0.01
SMARCA5-202ENST00000508573 CNKSR2Q8WXI2 1034 aa15.1■□□□□ 0.01
SMARCA5-202ENST00000508573 HOXD11P31277 338 aaPredicted RBP15.04■□□□□ -0
SMARCA5-202ENST00000508573 RNF216Q9NWF9 866 aaPredicted RBP14.95□□□□□ -0.02
SMARCA5-202ENST00000508573 NCBP3Q53F19 620 aaKnown RBP14.83□□□□□ -0.04
SMARCA5-202ENST00000508573 CACNB1Q02641 598 aaPredicted RBP14.81□□□□□ -0.04
SMARCA5-202ENST00000508573 RNF39Q9H2S5 420 aa14.65□□□□□ -0.06
SMARCA5-202ENST00000508573 NPM3O75607 178 aaKnown RBP14.59□□□□□ -0.07
SMARCA5-202ENST00000508573 DNAJC5BQ9UF47 199 aa14.47□□□□□ -0.09
SMARCA5-202ENST00000508573 C1QBPQ07021 282 aaKnown RBP14.46□□□□□ -0.09
SMARCA5-202ENST00000508573 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.42□□□□□ -0.13e-8■■□□□ 11.7
SMARCA5-202ENST00000508573 KCNA4P22459 653 aa14.34□□□□□ -0.11
SMARCA5-202ENST00000508573 U3KPZ7 1027 aaPredicted RBP14.05□□□□□ -0.16
SMARCA5-202ENST00000508573 SLC4A2P04920 1241 aa13.93□□□□□ -0.18
SMARCA5-202ENST00000508573 CAPN15O75808 1086 aa13.9□□□□□ -0.18
SMARCA5-202ENST00000508573 SPINK5Q9NQ38 1064 aaPredicted RBP13.88□□□□□ -0.19
SMARCA5-202ENST00000508573 DSG3P32926 999 aa13.75□□□□□ -0.21
SMARCA5-202ENST00000508573 TRHP20396 242 aaPredicted RBP13.68□□□□□ -0.22
SMARCA5-202ENST00000508573 APLP2Q06481 763 aa13.67□□□□□ -0.22
SMARCA5-202ENST00000508573 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.66□□□□□ -0.22
SMARCA5-202ENST00000508573 HNRNPUL2Q1KMD3 747 aaKnown RBP13.66□□□□□ -0.22
SMARCA5-202ENST00000508573 SAMD1Q6SPF0 538 aaPredicted RBP13.58□□□□□ -0.24
SMARCA5-202ENST00000508573 ZNF219Q9P2Y4 722 aaPredicted RBP13.58□□□□□ -0.24
SMARCA5-202ENST00000508573 ABCB7O75027 752 aa13.57□□□□□ -0.24
SMARCA5-202ENST00000508573 SLC4A1APQ9BWU0 796 aaKnown RBP13.55□□□□□ -0.24
SMARCA5-202ENST00000508573 MYCNP04198 464 aaPredicted RBP13.48□□□□□ -0.25
SMARCA5-202ENST00000508573 FOXD4L1Q9NU39 408 aa13.35□□□□□ -0.27
SMARCA5-202ENST00000508573 POLA2Q14181 598 aa13.3□□□□□ -0.28
SMARCA5-202ENST00000508573 ATF5Q9Y2D1 282 aaPredicted RBP13.21□□□□□ -0.29
SMARCA5-202ENST00000508573 POTEHQ6S545 545 aa13.16□□□□□ -0.3
SMARCA5-202ENST00000508573 ZBTB22O15209 634 aa13.15□□□□□ -0.3
SMARCA5-202ENST00000508573 RBM42Q9BTD8 480 aaKnown RBP13.1□□□□□ -0.31
SMARCA5-202ENST00000508573 ZBTB12Q9Y330 459 aaPredicted RBP12.95□□□□□ -0.34
SMARCA5-202ENST00000508573 ATXN8OSP0DMR3 200 aa12.92□□□□□ -0.34
SMARCA5-202ENST00000508573 CHRDL2Q6WN34 429 aa12.83□□□□□ -0.36
SMARCA5-202ENST00000508573 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
SMARCA5-202ENST00000508573 AKT1S1Q96B36 256 aa12.82□□□□□ -0.36
SMARCA5-202ENST00000508573 REM2Q8IYK8 340 aaPredicted RBP12.72□□□□□ -0.37
SMARCA5-202ENST00000508573 FBLN2P98095 1184 aa12.7□□□□□ -0.38
SMARCA5-202ENST00000508573 CSRNP3Q8WYN3 585 aa12.59□□□□□ -0.39
SMARCA5-202ENST00000508573 MKRN4PQ13434 485 aaPredicted RBP12.58□□□□□ -0.4
SMARCA5-202ENST00000508573 SPDYE2BA6NHP3 402 aa12.57□□□□□ -0.4
SMARCA5-202ENST00000508573 SPDYE6P0CI01 402 aa12.57□□□□□ -0.4
SMARCA5-202ENST00000508573 SPDYE2Q495Y8 402 aa12.57□□□□□ -0.4
SMARCA5-202ENST00000508573 PITPNM1O00562 1244 aa12.56□□□□□ -0.4
SMARCA5-202ENST00000508573 PIP4P2Q8N4L2 257 aa12.53□□□□□ -0.4
SMARCA5-202ENST00000508573 ZNF692Q9BU19 519 aaPredicted RBP12.49□□□□□ -0.41
SMARCA5-202ENST00000508573 EHMT2Q96KQ7 1210 aa12.47□□□□□ -0.41
SMARCA5-202ENST00000508573 FXR2P51116 673 aaKnown RBP eCLIP12.45□□□□□ -0.425e-6■■■■□ 22.8
SMARCA5-202ENST00000508573 CLEC11AQ9Y240 323 aa12.42□□□□□ -0.42
SMARCA5-202ENST00000508573 HAX1O00165 279 aa12.37□□□□□ -0.43
SMARCA5-202ENST00000508573 SPDYE1Q8NFV5 336 aaPredicted RBP12.37□□□□□ -0.43
SMARCA5-202ENST00000508573 SSUH2Q9Y2M2 353 aa12.37□□□□□ -0.43
SMARCA5-202ENST00000508573 SP7Q8TDD2 431 aaPredicted RBP12.32□□□□□ -0.44
SMARCA5-202ENST00000508573 PABPN1Q86U42 306 aaKnown RBP eCLIP12.29□□□□□ -0.44
SMARCA5-202ENST00000508573 PRKAR2AP13861 404 aaKnown RBP12.27□□□□□ -0.45
SMARCA5-202ENST00000508573 PRR29P0C7W0 189 aa12.2□□□□□ -0.46
SMARCA5-202ENST00000508573 EVX2Q03828 476 aa12.19□□□□□ -0.46
SMARCA5-202ENST00000508573 CHADLQ6NUI6 762 aa12.16□□□□□ -0.46
SMARCA5-202ENST00000508573 C19orf67A6NJJ6 358 aa12.05□□□□□ -0.48
SMARCA5-202ENST00000508573 SPDYE4A6NLX3 237 aa12.02□□□□□ -0.49
SMARCA5-202ENST00000508573 FARP1Q9Y4F1 1045 aaPredicted RBP11.95□□□□□ -0.5
SMARCA5-202ENST00000508573 STAG3Q9UJ98 1225 aa11.94□□□□□ -0.5
SMARCA5-202ENST00000508573 GABBR2O75899 941 aa11.91□□□□□ -0.5
SMARCA5-202ENST00000508573 CD44P16070 742 aaKnown RBP11.88□□□□□ -0.51
SMARCA5-202ENST00000508573 CREBZFQ9NS37 354 aa11.85□□□□□ -0.51
SMARCA5-202ENST00000508573 ZRANB1Q9UGI0 708 aa11.74□□□□□ -0.53
SMARCA5-202ENST00000508573 CLCN6P51797 869 aa11.67□□□□□ -0.54
SMARCA5-202ENST00000508573 NPM1P06748 294 aaKnown RBP eCLIP11.65□□□□□ -0.54
SMARCA5-202ENST00000508573 ZNF579Q8NAF0 562 aaKnown RBP11.64□□□□□ -0.55
SMARCA5-202ENST00000508573 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
SMARCA5-202ENST00000508573 POTEIP0CG38 1075 aa11.63□□□□□ -0.55
SMARCA5-202ENST00000508573 PROM2Q8N271 834 aa11.63□□□□□ -0.55
SMARCA5-202ENST00000508573 MNX1P50219 401 aaPredicted RBP11.62□□□□□ -0.55
SMARCA5-202ENST00000508573 DCBLD2Q96PD2 775 aa11.61□□□□□ -0.55
SMARCA5-202ENST00000508573 LHX8Q68G74 356 aa11.6□□□□□ -0.55
SMARCA5-202ENST00000508573 GALR2O43603 387 aaPredicted RBP11.55□□□□□ -0.56
SMARCA5-202ENST00000508573 PHF12Q96QT6 1004 aa11.55□□□□□ -0.56
SMARCA5-202ENST00000508573 MIER1Q8N108 512 aa11.53□□□□□ -0.56
SMARCA5-202ENST00000508573 TSPYL2Q9H2G4 693 aaPredicted RBP11.49□□□□□ -0.57
SMARCA5-202ENST00000508573 PLEKHG5O94827 1062 aa11.48□□□□□ -0.57
SMARCA5-202ENST00000508573 FKBP8Q14318 412 aa11.45□□□□□ -0.58
SMARCA5-202ENST00000508573 PLCD3Q8N3E9 789 aa11.42□□□□□ -0.58
SMARCA5-202ENST00000508573 MS4A3Q96HJ5 214 aa11.38□□□□□ -0.59
SMARCA5-202ENST00000508573 CCDC61Q9Y6R9 512 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms