RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 AEBP2Q6ZN18 517 aaPredicted RBP25.6■■□□□ 1.69
NUP54-206ENST00000508465 CHIC1Q5VXU3 224 aa24.32■■□□□ 1.48
NUP54-206ENST00000508465 SENP3Q9H4L4 574 aaPredicted RBP21.98■■□□□ 1.11
NUP54-206ENST00000508465 PHF23Q9BUL5 403 aaPredicted RBP21.66■■□□□ 1.06
NUP54-206ENST00000508465 FOXD1Q16676 465 aa20.43■□□□□ 0.86
NUP54-206ENST00000508465 PLPPR3Q6T4P5 718 aa19.45■□□□□ 0.7
NUP54-206ENST00000508465 MSH5O43196 834 aa19.24■□□□□ 0.67
NUP54-206ENST00000508465 PIAS4Q8N2W9 510 aaPredicted RBP19.12■□□□□ 0.65
NUP54-206ENST00000508465 PPP6R1Q9UPN7 881 aa19.01■□□□□ 0.63
NUP54-206ENST00000508465 ADRA2BP18089 450 aa18.98■□□□□ 0.63
NUP54-206ENST00000508465 POTEDQ86YR6 584 aa18.83■□□□□ 0.6
NUP54-206ENST00000508465 SCAF1Q9H7N4 1312 aaKnown RBP17.5■□□□□ 0.39
NUP54-206ENST00000508465 MAPK8IP2Q13387 824 aaPredicted RBP17.44■□□□□ 0.38
NUP54-206ENST00000508465 DMRT2Q9Y5R5 561 aa17.38■□□□□ 0.37
NUP54-206ENST00000508465 PPP4R3CPQ6ZMV5 832 aa17.01■□□□□ 0.31
NUP54-206ENST00000508465 DCAF8L1A6NGE4 600 aa16.74■□□□□ 0.27
NUP54-206ENST00000508465 CNKSR2Q8WXI2 1034 aa16.74■□□□□ 0.27
NUP54-206ENST00000508465 HOXD11P31277 338 aaPredicted RBP16.7■□□□□ 0.26
NUP54-206ENST00000508465 RNF216Q9NWF9 866 aaPredicted RBP16.59■□□□□ 0.25
NUP54-206ENST00000508465 CACNB1Q02641 598 aaPredicted RBP16.56■□□□□ 0.24
NUP54-206ENST00000508465 NCBP3Q53F19 620 aaKnown RBP16.42■□□□□ 0.22
NUP54-206ENST00000508465 RNF39Q9H2S5 420 aa16.34■□□□□ 0.21
NUP54-206ENST00000508465 DNAJC5BQ9UF47 199 aa16.2■□□□□ 0.18
NUP54-206ENST00000508465 C1QBPQ07021 282 aaKnown RBP16.17■□□□□ 0.18
NUP54-206ENST00000508465 NPM3O75607 178 aaKnown RBP16.07■□□□□ 0.16
NUP54-206ENST00000508465 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.99■□□□□ 0.15
NUP54-206ENST00000508465 KCNA4P22459 653 aa15.67■□□□□ 0.1
NUP54-206ENST00000508465 U3KPZ7 1027 aaPredicted RBP15.55■□□□□ 0.08
NUP54-206ENST00000508465 CAPN15O75808 1086 aa15.42■□□□□ 0.06
NUP54-206ENST00000508465 SPINK5Q9NQ38 1064 aaPredicted RBP15.35■□□□□ 0.05
NUP54-206ENST00000508465 SLC4A2P04920 1241 aa15.33■□□□□ 0.04
NUP54-206ENST00000508465 DSG3P32926 999 aa15.28■□□□□ 0.04
NUP54-206ENST00000508465 APLP2Q06481 763 aa15.28■□□□□ 0.04
NUP54-206ENST00000508465 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.22■□□□□ 0.03
NUP54-206ENST00000508465 HNRNPUL2Q1KMD3 747 aaKnown RBP15.22■□□□□ 0.03
NUP54-206ENST00000508465 TRHP20396 242 aaPredicted RBP15.13■□□□□ 0.01
NUP54-206ENST00000508465 ZNF219Q9P2Y4 722 aaPredicted RBP15.13■□□□□ 0.01
NUP54-206ENST00000508465 SAMD1Q6SPF0 538 aaPredicted RBP15.1■□□□□ 0.01
NUP54-206ENST00000508465 ABCB7O75027 752 aa14.99□□□□□ -0.01
NUP54-206ENST00000508465 MYCNP04198 464 aaPredicted RBP14.91□□□□□ -0.02
NUP54-206ENST00000508465 SLC4A1APQ9BWU0 796 aaKnown RBP14.84□□□□□ -0.03
NUP54-206ENST00000508465 POTEHQ6S545 545 aa14.77□□□□□ -0.05
NUP54-206ENST00000508465 POLA2Q14181 598 aa14.7□□□□□ -0.06
NUP54-206ENST00000508465 FOXD4L1Q9NU39 408 aa14.7□□□□□ -0.06
NUP54-206ENST00000508465 RBM42Q9BTD8 480 aaKnown RBP14.67□□□□□ -0.06
NUP54-206ENST00000508465 ATF5Q9Y2D1 282 aaPredicted RBP14.48□□□□□ -0.09
NUP54-206ENST00000508465 ZBTB12Q9Y330 459 aaPredicted RBP14.46□□□□□ -0.09
NUP54-206ENST00000508465 ZBTB22O15209 634 aa14.34□□□□□ -0.11
NUP54-206ENST00000508465 CHRDL2Q6WN34 429 aa14.32□□□□□ -0.12
NUP54-206ENST00000508465 ATXN8OSP0DMR3 200 aa14.29□□□□□ -0.12
NUP54-206ENST00000508465 AKT1S1Q96B36 256 aa14.29□□□□□ -0.12
NUP54-206ENST00000508465 OSCARQ8IYS5 282 aa14.19□□□□□ -0.14
NUP54-206ENST00000508465 REM2Q8IYK8 340 aaPredicted RBP14.12□□□□□ -0.15
NUP54-206ENST00000508465 FBLN2P98095 1184 aa14.07□□□□□ -0.16
NUP54-206ENST00000508465 SPDYE2BA6NHP3 402 aa13.96□□□□□ -0.17
NUP54-206ENST00000508465 SPDYE6P0CI01 402 aa13.96□□□□□ -0.17
NUP54-206ENST00000508465 SPDYE2Q495Y8 402 aa13.96□□□□□ -0.17
NUP54-206ENST00000508465 PITPNM1O00562 1244 aa13.94□□□□□ -0.18
NUP54-206ENST00000508465 PIP4P2Q8N4L2 257 aa13.94□□□□□ -0.18
NUP54-206ENST00000508465 FXR2P51116 673 aaKnown RBP eCLIP13.85□□□□□ -0.19
NUP54-206ENST00000508465 MKRN4PQ13434 485 aaPredicted RBP13.82□□□□□ -0.2
NUP54-206ENST00000508465 SP7Q8TDD2 431 aaPredicted RBP13.81□□□□□ -0.2
NUP54-206ENST00000508465 ZNF692Q9BU19 519 aaPredicted RBP13.8□□□□□ -0.2
NUP54-206ENST00000508465 HAX1O00165 279 aa13.78□□□□□ -0.2
NUP54-206ENST00000508465 SPDYE1Q8NFV5 336 aaPredicted RBP13.76□□□□□ -0.21
NUP54-206ENST00000508465 CLEC11AQ9Y240 323 aa13.74□□□□□ -0.21
NUP54-206ENST00000508465 SSUH2Q9Y2M2 353 aa13.71□□□□□ -0.21
NUP54-206ENST00000508465 CSRNP3Q8WYN3 585 aa13.67□□□□□ -0.22
NUP54-206ENST00000508465 PRKAR2AP13861 404 aaKnown RBP13.62□□□□□ -0.23
NUP54-206ENST00000508465 PABPN1Q86U42 306 aaKnown RBP eCLIP13.56□□□□□ -0.24
NUP54-206ENST00000508465 PRR29P0C7W0 189 aa13.52□□□□□ -0.25
NUP54-206ENST00000508465 EVX2Q03828 476 aa13.48□□□□□ -0.25
NUP54-206ENST00000508465 EHMT2Q96KQ7 1210 aa13.48□□□□□ -0.25
NUP54-206ENST00000508465 C19orf67A6NJJ6 358 aa13.41□□□□□ -0.26
NUP54-206ENST00000508465 CHADLQ6NUI6 762 aa13.41□□□□□ -0.26
NUP54-206ENST00000508465 STAG3Q9UJ98 1225 aa13.26□□□□□ -0.29
NUP54-206ENST00000508465 FARP1Q9Y4F1 1045 aaPredicted RBP13.25□□□□□ -0.29
NUP54-206ENST00000508465 GABBR2O75899 941 aa13.24□□□□□ -0.29
NUP54-206ENST00000508465 SPDYE4A6NLX3 237 aa13.21□□□□□ -0.29
NUP54-206ENST00000508465 CD44P16070 742 aaKnown RBP13.19□□□□□ -0.3
NUP54-206ENST00000508465 CLCN6P51797 869 aa13.12□□□□□ -0.31
NUP54-206ENST00000508465 CREBZFQ9NS37 354 aa13.07□□□□□ -0.32
NUP54-206ENST00000508465 ZRANB1Q9UGI0 708 aa13.01□□□□□ -0.33
NUP54-206ENST00000508465 LHX8Q68G74 356 aa12.98□□□□□ -0.33
NUP54-206ENST00000508465 ZNF579Q8NAF0 562 aaKnown RBP12.96□□□□□ -0.33
NUP54-206ENST00000508465 PAK3O75914 559 aaPredicted RBP12.95□□□□□ -0.34
NUP54-206ENST00000508465 NPM1P06748 294 aaKnown RBP eCLIP12.95□□□□□ -0.34
NUP54-206ENST00000508465 DCBLD2Q96PD2 775 aa12.94□□□□□ -0.34
NUP54-206ENST00000508465 POTEIP0CG38 1075 aa12.9□□□□□ -0.34
NUP54-206ENST00000508465 MNX1P50219 401 aaPredicted RBP12.81□□□□□ -0.36
NUP54-206ENST00000508465 PROM2Q8N271 834 aa12.81□□□□□ -0.36
NUP54-206ENST00000508465 GALR2O43603 387 aaPredicted RBP12.79□□□□□ -0.36
NUP54-206ENST00000508465 PHF12Q96QT6 1004 aa12.75□□□□□ -0.37
NUP54-206ENST00000508465 PLEKHG5O94827 1062 aa12.73□□□□□ -0.37
NUP54-206ENST00000508465 MIER1Q8N108 512 aa12.66□□□□□ -0.38
NUP54-206ENST00000508465 TSPYL2Q9H2G4 693 aaPredicted RBP12.65□□□□□ -0.38
NUP54-206ENST00000508465 MS4A3Q96HJ5 214 aa12.59□□□□□ -0.39
NUP54-206ENST00000508465 PLCD3Q8N3E9 789 aa12.55□□□□□ -0.4
NUP54-206ENST00000508465 CCDC61Q9Y6R9 512 aa12.55□□□□□ -0.4
NUP54-206ENST00000508465 ASTLQ6HA08 431 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms