RNA–Protein interactions for RNA: ENST00000508037.1

HMGB3P16-201, Transcript of high mobility group box 3 pseudogene 16, humanhuman

BASIC

Gene HMGB3P16, Length 287 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P16-201ENST00000508037 AEBP2Q6ZN18 517 aaPredicted RBP14.45□□□□□ -0.1
HMGB3P16-201ENST00000508037 CHIC1Q5VXU3 224 aa13.99□□□□□ -0.17
HMGB3P16-201ENST00000508037 SENP3Q9H4L4 574 aaPredicted RBP12.36□□□□□ -0.43
HMGB3P16-201ENST00000508037 PHF23Q9BUL5 403 aaPredicted RBP12.24□□□□□ -0.45
HMGB3P16-201ENST00000508037 FOXD1Q16676 465 aa11.45□□□□□ -0.58
HMGB3P16-201ENST00000508037 PLPPR3Q6T4P5 718 aa11.32□□□□□ -0.6
HMGB3P16-201ENST00000508037 ADRA2BP18089 450 aa10.86□□□□□ -0.67
HMGB3P16-201ENST00000508037 PPP6R1Q9UPN7 881 aa10.86□□□□□ -0.67
HMGB3P16-201ENST00000508037 PIAS4Q8N2W9 510 aaPredicted RBP10.79□□□□□ -0.68
HMGB3P16-201ENST00000508037 MSH5O43196 834 aa10.68□□□□□ -0.7
HMGB3P16-201ENST00000508037 POTEDQ86YR6 584 aa10.17□□□□□ -0.78
HMGB3P16-201ENST00000508037 SCAF1Q9H7N4 1312 aaKnown RBP10.03□□□□□ -0.8
HMGB3P16-201ENST00000508037 PPP4R3CPQ6ZMV5 832 aa9.93□□□□□ -0.82
HMGB3P16-201ENST00000508037 MAPK8IP2Q13387 824 aaPredicted RBP9.9□□□□□ -0.82
HMGB3P16-201ENST00000508037 DMRT2Q9Y5R5 561 aa9.81□□□□□ -0.84
HMGB3P16-201ENST00000508037 NISCHQ9Y2I1 1504 aa9.76□□□□□ -0.85
HMGB3P16-201ENST00000508037 CNKSR2Q8WXI2 1034 aa9.7□□□□□ -0.86
HMGB3P16-201ENST00000508037 NCBP3Q53F19 620 aaKnown RBP9.67□□□□□ -0.86
HMGB3P16-201ENST00000508037 HOXD11P31277 338 aaPredicted RBP9.55□□□□□ -0.88
HMGB3P16-201ENST00000508037 RNF216Q9NWF9 866 aaPredicted RBP9.55□□□□□ -0.88
HMGB3P16-201ENST00000508037 KCNA4P22459 653 aa9.48□□□□□ -0.89
HMGB3P16-201ENST00000508037 NPM3O75607 178 aaKnown RBP9.46□□□□□ -0.9
HMGB3P16-201ENST00000508037 DCAF8L1A6NGE4 600 aa9.44□□□□□ -0.9
HMGB3P16-201ENST00000508037 DNAJC5BQ9UF47 199 aa9.21□□□□□ -0.94
HMGB3P16-201ENST00000508037 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.13□□□□□ -0.95
HMGB3P16-201ENST00000508037 RNF39Q9H2S5 420 aa9.1□□□□□ -0.95
HMGB3P16-201ENST00000508037 SLC4A1APQ9BWU0 796 aaKnown RBP9.03□□□□□ -0.96
HMGB3P16-201ENST00000508037 CACNB1Q02641 598 aaPredicted RBP9.02□□□□□ -0.97
HMGB3P16-201ENST00000508037 C1QBPQ07021 282 aaKnown RBP9.01□□□□□ -0.97
HMGB3P16-201ENST00000508037 SLC4A2P04920 1241 aa8.96□□□□□ -0.98
HMGB3P16-201ENST00000508037 U3KPZ7 1027 aaPredicted RBP8.92□□□□□ -0.98
HMGB3P16-201ENST00000508037 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.82□□□□□ -1
HMGB3P16-201ENST00000508037 HNRNPUL2Q1KMD3 747 aaKnown RBP8.82□□□□□ -1
HMGB3P16-201ENST00000508037 FOXD4L1Q9NU39 408 aa8.8□□□□□ -1
HMGB3P16-201ENST00000508037 APLP2Q06481 763 aa8.79□□□□□ -1
HMGB3P16-201ENST00000508037 MYCNP04198 464 aaPredicted RBP8.78□□□□□ -1
HMGB3P16-201ENST00000508037 SAMD1Q6SPF0 538 aaPredicted RBP8.77□□□□□ -1.01
HMGB3P16-201ENST00000508037 CAPN15O75808 1086 aa8.74□□□□□ -1.01
HMGB3P16-201ENST00000508037 SPINK5Q9NQ38 1064 aaPredicted RBP8.71□□□□□ -1.02
HMGB3P16-201ENST00000508037 ZBTB22O15209 634 aa8.68□□□□□ -1.02
HMGB3P16-201ENST00000508037 ZNF219Q9P2Y4 722 aaPredicted RBP8.66□□□□□ -1.02
HMGB3P16-201ENST00000508037 TRHP20396 242 aaPredicted RBP8.65□□□□□ -1.02
HMGB3P16-201ENST00000508037 DSG3P32926 999 aa8.59□□□□□ -1.03
HMGB3P16-201ENST00000508037 EHMT2Q96KQ7 1210 aa8.56□□□□□ -1.04
HMGB3P16-201ENST00000508037 ABCB7O75027 752 aa8.53□□□□□ -1.04
HMGB3P16-201ENST00000508037 ATXN8OSP0DMR3 200 aa8.53□□□□□ -1.04
HMGB3P16-201ENST00000508037 CSRNP3Q8WYN3 585 aa8.52□□□□□ -1.05
HMGB3P16-201ENST00000508037 ATF5Q9Y2D1 282 aaPredicted RBP8.5□□□□□ -1.05
HMGB3P16-201ENST00000508037 POLA2Q14181 598 aa8.46□□□□□ -1.06
HMGB3P16-201ENST00000508037 ZBTB12Q9Y330 459 aaPredicted RBP8.35□□□□□ -1.07
HMGB3P16-201ENST00000508037 CCDC180Q9P1Z9 1646 aa8.29□□□□□ -1.08
HMGB3P16-201ENST00000508037 ZCCHC6Q5VYS8 1495 aaKnown RBP8.29□□□□□ -1.08
HMGB3P16-201ENST00000508037 SHROOM4Q9ULL8 1493 aa8.27□□□□□ -1.09
HMGB3P16-201ENST00000508037 RBM42Q9BTD8 480 aaKnown RBP8.25□□□□□ -1.09
HMGB3P16-201ENST00000508037 FBLN2P98095 1184 aa8.24□□□□□ -1.09
HMGB3P16-201ENST00000508037 SUPT5HO00267 1087 aaKnown RBP8.23□□□□□ -1.09
HMGB3P16-201ENST00000508037 HRCP23327 699 aa8.17□□□□□ -1.1
HMGB3P16-201ENST00000508037 OSCARQ8IYS5 282 aa8.16□□□□□ -1.1
HMGB3P16-201ENST00000508037 MKRN4PQ13434 485 aaPredicted RBP8.12□□□□□ -1.11
HMGB3P16-201ENST00000508037 DCAF1Q9Y4B6 1507 aa8.1□□□□□ -1.11
HMGB3P16-201ENST00000508037 AKT1S1Q96B36 256 aa8.09□□□□□ -1.11
HMGB3P16-201ENST00000508037 SPDYE2BA6NHP3 402 aa8.08□□□□□ -1.12
HMGB3P16-201ENST00000508037 SPDYE6P0CI01 402 aa8.08□□□□□ -1.12
HMGB3P16-201ENST00000508037 SPDYE2Q495Y8 402 aa8.08□□□□□ -1.12
HMGB3P16-201ENST00000508037 MYO15BQ96JP2 1530 aa8.03□□□□□ -1.12
HMGB3P16-201ENST00000508037 ZNF692Q9BU19 519 aaPredicted RBP8.03□□□□□ -1.12
HMGB3P16-201ENST00000508037 REM2Q8IYK8 340 aaPredicted RBP7.99□□□□□ -1.13
HMGB3P16-201ENST00000508037 PCGF6Q9BYE7 350 aa7.99□□□□□ -1.13
HMGB3P16-201ENST00000508037 SSUH2Q9Y2M2 353 aa7.97□□□□□ -1.13
HMGB3P16-201ENST00000508037 POTEHQ6S545 545 aa7.96□□□□□ -1.14
HMGB3P16-201ENST00000508037 DCAF8L2P0C7V8 631 aa7.94□□□□□ -1.14
HMGB3P16-201ENST00000508037 CHRDL2Q6WN34 429 aa7.94□□□□□ -1.14
HMGB3P16-201ENST00000508037 ZEB1P37275 1124 aaPredicted RBP7.93□□□□□ -1.14
HMGB3P16-201ENST00000508037 TRIM26Q12899 539 aaPredicted RBP7.92□□□□□ -1.14
HMGB3P16-201ENST00000508037 SPDYE4A6NLX3 237 aa7.91□□□□□ -1.14
HMGB3P16-201ENST00000508037 PITPNM1O00562 1244 aa7.9□□□□□ -1.14
HMGB3P16-201ENST00000508037 PABPN1Q86U42 306 aaKnown RBP eCLIP7.9□□□□□ -1.14
HMGB3P16-201ENST00000508037 SPDYE1Q8NFV5 336 aaPredicted RBP7.9□□□□□ -1.14
HMGB3P16-201ENST00000508037 PELP1Q8IZL8 1130 aaKnown RBP7.87□□□□□ -1.15
HMGB3P16-201ENST00000508037 CLEC11AQ9Y240 323 aa7.87□□□□□ -1.15
HMGB3P16-201ENST00000508037 ABCC9O60706 1549 aa7.86□□□□□ -1.15
HMGB3P16-201ENST00000508037 PPARGC1BQ86YN6 1023 aaKnown RBP7.81□□□□□ -1.16
HMGB3P16-201ENST00000508037 LOC105371045A0A1W2PR82 267 aa7.79□□□□□ -1.16
HMGB3P16-201ENST00000508037 PIP4P2Q8N4L2 257 aa7.79□□□□□ -1.16
HMGB3P16-201ENST00000508037 PRR29P0C7W0 189 aa7.78□□□□□ -1.16
HMGB3P16-201ENST00000508037 FXR2P51116 673 aaKnown RBP eCLIP7.78□□□□□ -1.16
HMGB3P16-201ENST00000508037 STAG3Q9UJ98 1225 aa7.78□□□□□ -1.16
HMGB3P16-201ENST00000508037 FKBP8Q14318 412 aa7.75□□□□□ -1.17
HMGB3P16-201ENST00000508037 RSF1Q96T23 1441 aaPredicted RBP7.75□□□□□ -1.17
HMGB3P16-201ENST00000508037 TRIM41Q8WV44 630 aa7.74□□□□□ -1.17
HMGB3P16-201ENST00000508037 RB1CC1Q8TDY2 1594 aa7.74□□□□□ -1.17
HMGB3P16-201ENST00000508037 PRKAR2AP13861 404 aaKnown RBP7.72□□□□□ -1.17
HMGB3P16-201ENST00000508037 PROM2Q8N271 834 aa7.71□□□□□ -1.18
HMGB3P16-201ENST00000508037 SCRIBQ14160 1630 aa7.67□□□□□ -1.18
HMGB3P16-201ENST00000508037 CHADLQ6NUI6 762 aa7.66□□□□□ -1.18
HMGB3P16-201ENST00000508037 NACADO15069 1562 aa7.64□□□□□ -1.19
HMGB3P16-201ENST00000508037 HAX1O00165 279 aa7.63□□□□□ -1.19
HMGB3P16-201ENST00000508037 MYT1Q01538 1121 aa7.6□□□□□ -1.19
HMGB3P16-201ENST00000508037 CREBZFQ9NS37 354 aa7.59□□□□□ -1.19
HMGB3P16-201ENST00000508037 FARP1Q9Y4F1 1045 aaPredicted RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms