RNA–Protein interactions for RNA: ENST00000507229.5

MIB2-222, Transcript of mindbomb E3 ubiquitin protein ligase 2, human

TSL 2

Gene MIB2, Length 2,582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MIB2-222	ENST00000507229	NISCH	Q9Y2I1	1504 aa		39.79	■■■■□ 3.96
MIB2-222	ENST00000507229	SHROOM4	Q9ULL8	1493 aa		34.44	■■■■□ 3.1
MIB2-222	ENST00000507229	SUPT5H	O00267	1087 aa	Known RBP	33.87	■■■■□ 3.01
MIB2-222	ENST00000507229	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.67	■■■□□ 2.98
MIB2-222	ENST00000507229	CCDC180	Q9P1Z9	1646 aa		33.54	■■■□□ 2.96
MIB2-222	ENST00000507229	DCAF8L2	P0C7V8	631 aa		33.29	■■■□□ 2.92
MIB2-222	ENST00000507229	CHIC1	Q5VXU3	224 aa		32.93	■■■□□ 2.86
MIB2-222	ENST00000507229	MYO15B	Q96JP2	1530 aa		32.91	■■■□□ 2.86
MIB2-222	ENST00000507229	HRC	P23327	699 aa		32.61	■■■□□ 2.81
MIB2-222	ENST00000507229	DCAF1	Q9Y4B6	1507 aa		32.47	■■■□□ 2.79
MIB2-222	ENST00000507229	PCGF6	Q9BYE7	350 aa		32.27	■■■□□ 2.76
MIB2-222	ENST00000507229	LOC105371045	A0A1W2PR82	267 aa		32.12	■■■□□ 2.73
MIB2-222	ENST00000507229	PELP1	Q8IZL8	1130 aa	Known RBP	32.05	■■■□□ 2.72
MIB2-222	ENST00000507229	PPARGC1B	Q86YN6	1023 aa	Known RBP	32	■■■□□ 2.71
MIB2-222	ENST00000507229	ABCC9	O60706	1549 aa		31.81	■■■□□ 2.68
MIB2-222	ENST00000507229	SCRIB	Q14160	1630 aa		31.76	■■■□□ 2.67
MIB2-222	ENST00000507229	RSF1	Q96T23	1441 aa	Predicted RBP	31.65	■■■□□ 2.66
MIB2-222	ENST00000507229	TRIM26	Q12899	539 aa	Predicted RBP	31.45	■■■□□ 2.62
MIB2-222	ENST00000507229	TRIM41	Q8WV44	630 aa		31.42	■■■□□ 2.62
MIB2-222	ENST00000507229	RB1CC1	Q8TDY2	1594 aa		31.39	■■■□□ 2.62
MIB2-222	ENST00000507229	FAM9A	Q8IZU1	332 aa	Predicted RBP	31.35	■■■□□ 2.61
MIB2-222	ENST00000507229	EHMT2	Q96KQ7	1210 aa		31.21	■■■□□ 2.59
MIB2-222	ENST00000507229	CECR2	Q9BXF3	1484 aa		31.17	■■■□□ 2.58
MIB2-222	ENST00000507229	SCAF1	Q9H7N4	1312 aa	Known RBP	31.11	■■■□□ 2.57
MIB2-222	ENST00000507229	MROH2B	Q7Z745	1585 aa		31.04	■■■□□ 2.56
MIB2-222	ENST00000507229	NACAD	O15069	1562 aa		31.01	■■■□□ 2.56
MIB2-222	ENST00000507229	MYT1	Q01538	1121 aa		30.9	■■■□□ 2.54
MIB2-222	ENST00000507229	WIZ	O95785	1651 aa		30.89	■■■□□ 2.54
MIB2-222	ENST00000507229	ZEB1	P37275	1124 aa	Predicted RBP	30.75	■■■□□ 2.51
MIB2-222	ENST00000507229	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.58	■■■□□ 2.49
MIB2-222	ENST00000507229	EIF4G1	Q04637	1599 aa	Known RBP	30.46	■■■□□ 2.47
MIB2-222	ENST00000507229	ABCC8	Q09428	1581 aa		30.36	■■■□□ 2.45
MIB2-222	ENST00000507229	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	30.31	■■■□□ 2.44
MIB2-222	ENST00000507229	TOP2A	P11388	1531 aa	Known RBP	30.28	■■■□□ 2.44
MIB2-222	ENST00000507229	CCDC88B	A6NC98	1476 aa		30.28	■■■□□ 2.44
MIB2-222	ENST00000507229	SMARCA4	P51532	1647 aa		30.24	■■■□□ 2.43
MIB2-222	ENST00000507229	TTBK1	Q5TCY1	1321 aa	Predicted RBP	30.24	■■■□□ 2.43
MIB2-222	ENST00000507229	ACIN1	Q9UKV3	1341 aa	Known RBP	30.21	■■■□□ 2.43
MIB2-222	ENST00000507229	SMARCA2	P51531	1590 aa		30.18	■■■□□ 2.42
MIB2-222	ENST00000507229	CCER1	Q8TC90	406 aa	Predicted RBP	30.17	■■■□□ 2.42
MIB2-222	ENST00000507229	SOGA1	O94964	1423 aa		30.13	■■■□□ 2.41
MIB2-222	ENST00000507229	NEUROD1	Q13562	356 aa		30.12	■■■□□ 2.41
MIB2-222	ENST00000507229	UNC13A	Q9UPW8	1703 aa		30.12	■■■□□ 2.41
MIB2-222	ENST00000507229	CEP162	Q5TB80	1403 aa		30.04	■■■□□ 2.4
MIB2-222	ENST00000507229	GTF3C3	Q9Y5Q9	886 aa		30.03	■■■□□ 2.4
MIB2-222	ENST00000507229	PABPN1	Q86U42	306 aa	Known RBP eCLIP	30	■■■□□ 2.39	6e-7	■■□□□ 12.3
MIB2-222	ENST00000507229	RUSC2	Q8N2Y8	1516 aa		30	■■■□□ 2.39
MIB2-222	ENST00000507229	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.95	■■■□□ 2.39
MIB2-222	ENST00000507229	UBTF	P17480	764 aa	Known RBP	29.93	■■■□□ 2.38
MIB2-222	ENST00000507229	CSRNP3	Q8WYN3	585 aa		29.93	■■■□□ 2.38
MIB2-222	ENST00000507229	TNIK	Q9UKE5	1360 aa		29.91	■■■□□ 2.38
MIB2-222	ENST00000507229	CENPB	P07199	599 aa	Predicted RBP	29.77	■■■□□ 2.36
MIB2-222	ENST00000507229	EEA1	Q15075	1411 aa		29.77	■■■□□ 2.36
MIB2-222	ENST00000507229	BICRA	Q9NZM4	1560 aa		29.74	■■■□□ 2.35
MIB2-222	ENST00000507229	DIEXF	Q68CQ4	756 aa	Known RBP	29.69	■■■□□ 2.34
MIB2-222	ENST00000507229	GOLGA3	Q08378	1498 aa		29.69	■■■□□ 2.34
MIB2-222	ENST00000507229	SYNJ1	O43426	1573 aa		29.58	■■■□□ 2.33
MIB2-222	ENST00000507229	PEG3	Q9GZU2	1588 aa		29.54	■■■□□ 2.32
MIB2-222	ENST00000507229	HNRNPUL2	Q1KMD3	747 aa	Known RBP	29.49	■■■□□ 2.31
MIB2-222	ENST00000507229	CEP164	Q9UPV0	1460 aa		29.47	■■■□□ 2.31
MIB2-222	ENST00000507229	RANGAP1	P46060	587 aa	Predicted RBP	29.47	■■■□□ 2.31
MIB2-222	ENST00000507229	ATAD2B	Q9ULI0	1458 aa		29.44	■■■□□ 2.3
MIB2-222	ENST00000507229	CLIP1	P30622	1438 aa		29.43	■■■□□ 2.3
MIB2-222	ENST00000507229	KIF21B	O75037	1637 aa		29.39	■■■□□ 2.3
MIB2-222	ENST00000507229	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.39	■■■□□ 2.29
MIB2-222	ENST00000507229	ZNF316	A6NFI3	1004 aa	Predicted RBP	29.36	■■■□□ 2.29
MIB2-222	ENST00000507229	RAPGEF2	Q9Y4G8	1499 aa		29.34	■■■□□ 2.29
MIB2-222	ENST00000507229	VPS8	Q8N3P4	1428 aa		29.28	■■■□□ 2.28
MIB2-222	ENST00000507229	APLP2	Q06481	763 aa		29.25	■■■□□ 2.27
MIB2-222	ENST00000507229	YTHDC1	Q96MU7	727 aa	Known RBP	29.15	■■■□□ 2.26
MIB2-222	ENST00000507229	TOP2B	Q02880	1626 aa		29.1	■■■□□ 2.25
MIB2-222	ENST00000507229	MIER1	Q8N108	512 aa		29.08	■■■□□ 2.24
MIB2-222	ENST00000507229	BIVM-ERCC5	R4GMW8	1640 aa		28.95	■■■□□ 2.23
MIB2-222	ENST00000507229	BCL11A	Q9H165	835 aa		28.95	■■■□□ 2.22
MIB2-222	ENST00000507229	KANK4	Q5T7N3	995 aa	Predicted RBP	28.93	■■■□□ 2.22
MIB2-222	ENST00000507229	PRX	Q9BXM0	1461 aa		28.92	■■■□□ 2.22
MIB2-222	ENST00000507229	ARAP1	Q96P48	1450 aa		28.91	■■■□□ 2.22
MIB2-222	ENST00000507229	ERICH3	Q5RHP9	1530 aa		28.86	■■■□□ 2.21
MIB2-222	ENST00000507229	CUX1	P39880	1505 aa		28.85	■■■□□ 2.21
MIB2-222	ENST00000507229	DHX57	Q6P158	1386 aa	Known RBP	28.79	■■■□□ 2.2
MIB2-222	ENST00000507229	NCAPD3	P42695	1498 aa		28.76	■■■□□ 2.19
MIB2-222	ENST00000507229	KIF27	Q86VH2	1401 aa		28.74	■■■□□ 2.19
MIB2-222	ENST00000507229	HMGXB3	Q12766	1538 aa		28.71	■■■□□ 2.19
MIB2-222	ENST00000507229	ANP32E	Q9BTT0	268 aa		28.7	■■■□□ 2.19
MIB2-222	ENST00000507229	ITGAE	P38570	1179 aa		28.66	■■■□□ 2.18
MIB2-222	ENST00000507229	CLSPN	Q9HAW4	1339 aa		28.64	■■■□□ 2.18
MIB2-222	ENST00000507229	CFTR	P13569	1480 aa		28.63	■■■□□ 2.17
MIB2-222	ENST00000507229	ARHGAP35	Q9NRY4	1499 aa		28.63	■■■□□ 2.17
MIB2-222	ENST00000507229	RRBP1	Q9P2E9	1410 aa	Known RBP	28.61	■■■□□ 2.17
MIB2-222	ENST00000507229	CCNB3	Q8WWL7	1395 aa		28.54	■■■□□ 2.16
MIB2-222	ENST00000507229	CUX2	O14529	1486 aa		28.49	■■■□□ 2.15
MIB2-222	ENST00000507229	IGF1R	P08069	1367 aa		28.47	■■■□□ 2.15
MIB2-222	ENST00000507229	TSHZ2	Q9NRE2	1034 aa		28.44	■■■□□ 2.14
MIB2-222	ENST00000507229	SUPT16H	Q9Y5B9	1047 aa	Known RBP	28.44	■■■□□ 2.14
MIB2-222	ENST00000507229	RAB3GAP2	Q9H2M9	1393 aa		28.37	■■■□□ 2.13
MIB2-222	ENST00000507229	CARMIL1	Q5VZK9	1371 aa		28.35	■■■□□ 2.13
MIB2-222	ENST00000507229	P3H3	Q8IVL6	736 aa		28.33	■■■□□ 2.13
MIB2-222	ENST00000507229	FGD5	Q6ZNL6	1462 aa		28.31	■■■□□ 2.12
MIB2-222	ENST00000507229	TIAM1	Q13009	1591 aa		28.3	■■■□□ 2.12
MIB2-222	ENST00000507229	CADPS	Q9ULU8	1353 aa		28.3	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms