RNA–Protein interactions for RNA: ENST00000507001.1

SPCS3-202, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 478 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-202ENST00000507001 AEBP2Q6ZN18 517 aaPredicted RBP29.56■■■□□ 2.32
SPCS3-202ENST00000507001 CHIC1Q5VXU3 224 aa28.11■■■□□ 2.09
SPCS3-202ENST00000507001 SENP3Q9H4L4 574 aaPredicted RBP25.31■■□□□ 1.64
SPCS3-202ENST00000507001 PHF23Q9BUL5 403 aaPredicted RBP24.91■■□□□ 1.58
SPCS3-202ENST00000507001 FOXD1Q16676 465 aa23.53■■□□□ 1.36
SPCS3-202ENST00000507001 PLPPR3Q6T4P5 718 aa22.47■■□□□ 1.19
SPCS3-202ENST00000507001 MSH5O43196 834 aa22.11■■□□□ 1.13
SPCS3-202ENST00000507001 PIAS4Q8N2W9 510 aaPredicted RBP21.97■■□□□ 1.11
SPCS3-202ENST00000507001 PPP6R1Q9UPN7 881 aa21.93■■□□□ 1.1
SPCS3-202ENST00000507001 ADRA2BP18089 450 aa21.84■■□□□ 1.09
SPCS3-202ENST00000507001 POTEDQ86YR6 584 aa21.55■■□□□ 1.04
SPCS3-202ENST00000507001 SCAF1Q9H7N4 1312 aaKnown RBP20.11■□□□□ 0.81
SPCS3-202ENST00000507001 DMRT2Q9Y5R5 561 aa20.06■□□□□ 0.8
SPCS3-202ENST00000507001 MAPK8IP2Q13387 824 aaPredicted RBP20.05■□□□□ 0.8
SPCS3-202ENST00000507001 PPP4R3CPQ6ZMV5 832 aa19.64■□□□□ 0.73
SPCS3-202ENST00000507001 HOXD11P31277 338 aaPredicted RBP19.33■□□□□ 0.68
SPCS3-202ENST00000507001 CNKSR2Q8WXI2 1034 aa19.33■□□□□ 0.68
SPCS3-202ENST00000507001 RNF216Q9NWF9 866 aaPredicted RBP19.17■□□□□ 0.66
SPCS3-202ENST00000507001 DCAF8L1A6NGE4 600 aa19.09■□□□□ 0.65
SPCS3-202ENST00000507001 NCBP3Q53F19 620 aaKnown RBP18.92■□□□□ 0.62
SPCS3-202ENST00000507001 CACNB1Q02641 598 aaPredicted RBP18.89■□□□□ 0.61
SPCS3-202ENST00000507001 RNF39Q9H2S5 420 aa18.84■□□□□ 0.61
SPCS3-202ENST00000507001 DNAJC5BQ9UF47 199 aa18.79■□□□□ 0.6
SPCS3-202ENST00000507001 NPM3O75607 178 aaKnown RBP18.61■□□□□ 0.57
SPCS3-202ENST00000507001 C1QBPQ07021 282 aaKnown RBP18.59■□□□□ 0.57
SPCS3-202ENST00000507001 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.33■□□□□ 0.522e-9■□□□□ 9.8
SPCS3-202ENST00000507001 KCNA4P22459 653 aa18.18■□□□□ 0.5
SPCS3-202ENST00000507001 U3KPZ7 1027 aaPredicted RBP17.97■□□□□ 0.47
SPCS3-202ENST00000507001 SLC4A2P04920 1241 aa17.77■□□□□ 0.44
SPCS3-202ENST00000507001 SPINK5Q9NQ38 1064 aaPredicted RBP17.67■□□□□ 0.42
SPCS3-202ENST00000507001 CAPN15O75808 1086 aa17.64■□□□□ 0.41
SPCS3-202ENST00000507001 DSG3P32926 999 aa17.61■□□□□ 0.41
SPCS3-202ENST00000507001 APLP2Q06481 763 aa17.57■□□□□ 0.4
SPCS3-202ENST00000507001 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.53■□□□□ 0.4
SPCS3-202ENST00000507001 HNRNPUL2Q1KMD3 747 aaKnown RBP17.53■□□□□ 0.4
SPCS3-202ENST00000507001 ZNF219Q9P2Y4 722 aaPredicted RBP17.42■□□□□ 0.38
SPCS3-202ENST00000507001 SAMD1Q6SPF0 538 aaPredicted RBP17.41■□□□□ 0.38
SPCS3-202ENST00000507001 TRHP20396 242 aaPredicted RBP17.33■□□□□ 0.36
SPCS3-202ENST00000507001 MYCNP04198 464 aaPredicted RBP17.26■□□□□ 0.35
SPCS3-202ENST00000507001 ABCB7O75027 752 aa17.19■□□□□ 0.34
SPCS3-202ENST00000507001 SLC4A1APQ9BWU0 796 aaKnown RBP17.18■□□□□ 0.34
SPCS3-202ENST00000507001 FOXD4L1Q9NU39 408 aa17.04■□□□□ 0.32
SPCS3-202ENST00000507001 POLA2Q14181 598 aa16.89■□□□□ 0.29
SPCS3-202ENST00000507001 POTEHQ6S545 545 aa16.89■□□□□ 0.29
SPCS3-202ENST00000507001 RBM42Q9BTD8 480 aaKnown RBP16.86■□□□□ 0.29
SPCS3-202ENST00000507001 ATF5Q9Y2D1 282 aaPredicted RBP16.76■□□□□ 0.27
SPCS3-202ENST00000507001 ZBTB22O15209 634 aa16.71■□□□□ 0.27
SPCS3-202ENST00000507001 ZBTB12Q9Y330 459 aaPredicted RBP16.67■□□□□ 0.26
SPCS3-202ENST00000507001 ATXN8OSP0DMR3 200 aa16.59■□□□□ 0.25
SPCS3-202ENST00000507001 AKT1S1Q96B36 256 aa16.45■□□□□ 0.22
SPCS3-202ENST00000507001 CHRDL2Q6WN34 429 aa16.44■□□□□ 0.22
SPCS3-202ENST00000507001 OSCARQ8IYS5 282 aa16.35■□□□□ 0.21
SPCS3-202ENST00000507001 REM2Q8IYK8 340 aaPredicted RBP16.24■□□□□ 0.19
SPCS3-202ENST00000507001 FBLN2P98095 1184 aa16.18■□□□□ 0.18
SPCS3-202ENST00000507001 SPDYE2BA6NHP3 402 aa16.12■□□□□ 0.17
SPCS3-202ENST00000507001 SPDYE6P0CI01 402 aa16.12■□□□□ 0.17
SPCS3-202ENST00000507001 SPDYE2Q495Y8 402 aa16.12■□□□□ 0.17
SPCS3-202ENST00000507001 PITPNM1O00562 1244 aa16.06■□□□□ 0.16
SPCS3-202ENST00000507001 MKRN4PQ13434 485 aaPredicted RBP16.03■□□□□ 0.16
SPCS3-202ENST00000507001 PIP4P2Q8N4L2 257 aa16.03■□□□□ 0.16
SPCS3-202ENST00000507001 FXR2P51116 673 aaKnown RBP eCLIP15.98■□□□□ 0.15
SPCS3-202ENST00000507001 CSRNP3Q8WYN3 585 aa15.93■□□□□ 0.14
SPCS3-202ENST00000507001 SSUH2Q9Y2M2 353 aa15.9■□□□□ 0.14
SPCS3-202ENST00000507001 ZNF692Q9BU19 519 aaPredicted RBP15.85■□□□□ 0.13
SPCS3-202ENST00000507001 SP7Q8TDD2 431 aaPredicted RBP15.84■□□□□ 0.13
SPCS3-202ENST00000507001 SPDYE1Q8NFV5 336 aaPredicted RBP15.83■□□□□ 0.12
SPCS3-202ENST00000507001 HAX1O00165 279 aa15.71■□□□□ 0.11
SPCS3-202ENST00000507001 CLEC11AQ9Y240 323 aa15.7■□□□□ 0.1
SPCS3-202ENST00000507001 PRKAR2AP13861 404 aaKnown RBP15.63■□□□□ 0.09
SPCS3-202ENST00000507001 EHMT2Q96KQ7 1210 aa15.62■□□□□ 0.09
SPCS3-202ENST00000507001 PABPN1Q86U42 306 aaKnown RBP eCLIP15.61■□□□□ 0.09
SPCS3-202ENST00000507001 PRR29P0C7W0 189 aa15.49■□□□□ 0.07
SPCS3-202ENST00000507001 EVX2Q03828 476 aa15.49■□□□□ 0.07
SPCS3-202ENST00000507001 C19orf67A6NJJ6 358 aa15.46■□□□□ 0.07
SPCS3-202ENST00000507001 CHADLQ6NUI6 762 aa15.4■□□□□ 0.06
SPCS3-202ENST00000507001 STAG3Q9UJ98 1225 aa15.27■□□□□ 0.04
SPCS3-202ENST00000507001 SPDYE4A6NLX3 237 aa15.26■□□□□ 0.03
SPCS3-202ENST00000507001 FARP1Q9Y4F1 1045 aaPredicted RBP15.24■□□□□ 0.03
SPCS3-202ENST00000507001 GABBR2O75899 941 aa15.19■□□□□ 0.02
SPCS3-202ENST00000507001 CD44P16070 742 aaKnown RBP15.15■□□□□ 0.02
SPCS3-202ENST00000507001 CLCN6P51797 869 aa15.11■□□□□ 0.01
SPCS3-202ENST00000507001 CREBZFQ9NS37 354 aa15.11■□□□□ 0.01
SPCS3-202ENST00000507001 PROM2Q8N271 834 aa14.99□□□□□ -0.01
SPCS3-202ENST00000507001 ZNF579Q8NAF0 562 aaKnown RBP14.98□□□□□ -0.01
SPCS3-202ENST00000507001 ZRANB1Q9UGI0 708 aa14.91□□□□□ -0.02
SPCS3-202ENST00000507001 MNX1P50219 401 aaPredicted RBP14.88□□□□□ -0.03
SPCS3-202ENST00000507001 NPM1P06748 294 aaKnown RBP eCLIP14.87□□□□□ -0.03
SPCS3-202ENST00000507001 POTEIP0CG38 1075 aa14.86□□□□□ -0.03
SPCS3-202ENST00000507001 PAK3O75914 559 aaPredicted RBP14.83□□□□□ -0.04
SPCS3-202ENST00000507001 LHX8Q68G74 356 aa14.83□□□□□ -0.04
SPCS3-202ENST00000507001 DCBLD2Q96PD2 775 aa14.77□□□□□ -0.05
SPCS3-202ENST00000507001 GALR2O43603 387 aaPredicted RBP14.71□□□□□ -0.05
SPCS3-202ENST00000507001 PHF12Q96QT6 1004 aa14.67□□□□□ -0.06
SPCS3-202ENST00000507001 PLEKHG5O94827 1062 aa14.59□□□□□ -0.07
SPCS3-202ENST00000507001 CCDC61Q9Y6R9 512 aa14.53□□□□□ -0.08
SPCS3-202ENST00000507001 MIER1Q8N108 512 aa14.52□□□□□ -0.09
SPCS3-202ENST00000507001 MS4A3Q96HJ5 214 aa14.51□□□□□ -0.09
SPCS3-202ENST00000507001 TSPYL2Q9H2G4 693 aaPredicted RBP14.5□□□□□ -0.09
SPCS3-202ENST00000507001 ASTLQ6HA08 431 aaPredicted RBP14.48□□□□□ -0.09
SPCS3-202ENST00000507001 FKBP8Q14318 412 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms