RNA–Protein interactions for RNA: ENST00000505998.5

NIPBL-205, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 5

Gene NIPBL, Length 969 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-205ENST00000505998 AEBP2Q6ZN18 517 aaPredicted RBP28.81■■■□□ 2.2
NIPBL-205ENST00000505998 CHIC1Q5VXU3 224 aa28.35■■■□□ 2.13
NIPBL-205ENST00000505998 PHF23Q9BUL5 403 aaPredicted RBP24.92■■□□□ 1.58
NIPBL-205ENST00000505998 SENP3Q9H4L4 574 aaPredicted RBP24.47■■□□□ 1.51
NIPBL-205ENST00000505998 PLPPR3Q6T4P5 718 aa23.13■■□□□ 1.29
NIPBL-205ENST00000505998 FOXD1Q16676 465 aa22.66■■□□□ 1.22
NIPBL-205ENST00000505998 ADRA2BP18089 450 aa21.95■■□□□ 1.1
NIPBL-205ENST00000505998 PPP6R1Q9UPN7 881 aa21.93■■□□□ 1.1
NIPBL-205ENST00000505998 PIAS4Q8N2W9 510 aaPredicted RBP21.45■■□□□ 1.02
NIPBL-205ENST00000505998 MSH5O43196 834 aa20.86■□□□□ 0.93
NIPBL-205ENST00000505998 PPP4R3CPQ6ZMV5 832 aa20.39■□□□□ 0.85
NIPBL-205ENST00000505998 SCAF1Q9H7N4 1312 aaKnown RBP20.13■□□□□ 0.81
NIPBL-205ENST00000505998 KCNA4P22459 653 aa20.12■□□□□ 0.81
NIPBL-205ENST00000505998 NCBP3Q53F19 620 aaKnown RBP19.95■□□□□ 0.78
NIPBL-205ENST00000505998 MAPK8IP2Q13387 824 aaPredicted RBP19.85■□□□□ 0.77
NIPBL-205ENST00000505998 CNKSR2Q8WXI2 1034 aa19.79■□□□□ 0.76
NIPBL-205ENST00000505998 NPM3O75607 178 aaKnown RBP19.61■□□□□ 0.73
NIPBL-205ENST00000505998 DMRT2Q9Y5R5 561 aa19.54■□□□□ 0.72
NIPBL-205ENST00000505998 RNF216Q9NWF9 866 aaPredicted RBP19.34■□□□□ 0.69
NIPBL-205ENST00000505998 SLC4A1APQ9BWU0 796 aaKnown RBP19.22■□□□□ 0.67
NIPBL-205ENST00000505998 HOXD11P31277 338 aaPredicted RBP19.2■□□□□ 0.66
NIPBL-205ENST00000505998 DNAJC5BQ9UF47 199 aa18.98■□□□□ 0.63
NIPBL-205ENST00000505998 EHMT2Q96KQ7 1210 aa18.89■□□□□ 0.61
NIPBL-205ENST00000505998 DCAF8L1A6NGE4 600 aa18.75■□□□□ 0.59
NIPBL-205ENST00000505998 POTEDQ86YR6 584 aa18.64■□□□□ 0.57
NIPBL-205ENST00000505998 CSRNP3Q8WYN3 585 aa18.56■□□□□ 0.56
NIPBL-205ENST00000505998 FOXD4L1Q9NU39 408 aa18.49■□□□□ 0.55
NIPBL-205ENST00000505998 ZBTB22O15209 634 aa18.48■□□□□ 0.55
NIPBL-205ENST00000505998 SLC4A2P04920 1241 aa18.46■□□□□ 0.55
NIPBL-205ENST00000505998 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.35■□□□□ 0.53
NIPBL-205ENST00000505998 MYCNP04198 464 aaPredicted RBP18.14■□□□□ 0.49
NIPBL-205ENST00000505998 U3KPZ7 1027 aaPredicted RBP18.04■□□□□ 0.48
NIPBL-205ENST00000505998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.91■□□□□ 0.46
NIPBL-205ENST00000505998 HNRNPUL2Q1KMD3 747 aaKnown RBP17.91■□□□□ 0.46
NIPBL-205ENST00000505998 RNF39Q9H2S5 420 aa17.86■□□□□ 0.45
NIPBL-205ENST00000505998 SAMD1Q6SPF0 538 aaPredicted RBP17.85■□□□□ 0.45
NIPBL-205ENST00000505998 ATXN8OSP0DMR3 200 aa17.82■□□□□ 0.44
NIPBL-205ENST00000505998 APLP2Q06481 763 aa17.7■□□□□ 0.42
NIPBL-205ENST00000505998 C1QBPQ07021 282 aaKnown RBP17.68■□□□□ 0.42
NIPBL-205ENST00000505998 ATF5Q9Y2D1 282 aaPredicted RBP17.6■□□□□ 0.41
NIPBL-205ENST00000505998 SPINK5Q9NQ38 1064 aaPredicted RBP17.48■□□□□ 0.39
NIPBL-205ENST00000505998 CAPN15O75808 1086 aa17.45■□□□□ 0.38
NIPBL-205ENST00000505998 TRHP20396 242 aaPredicted RBP17.4■□□□□ 0.38
NIPBL-205ENST00000505998 ZNF219Q9P2Y4 722 aaPredicted RBP17.4■□□□□ 0.38
NIPBL-205ENST00000505998 CACNB1Q02641 598 aaPredicted RBP17.31■□□□□ 0.36
NIPBL-205ENST00000505998 POLA2Q14181 598 aa17.14■□□□□ 0.33
NIPBL-205ENST00000505998 ABCB7O75027 752 aa17.11■□□□□ 0.33
NIPBL-205ENST00000505998 DSG3P32926 999 aa17.07■□□□□ 0.32
NIPBL-205ENST00000505998 FBLN2P98095 1184 aa16.92■□□□□ 0.3
NIPBL-205ENST00000505998 ZBTB12Q9Y330 459 aaPredicted RBP16.89■□□□□ 0.29
NIPBL-205ENST00000505998 MKRN4PQ13434 485 aaPredicted RBP16.85■□□□□ 0.29
NIPBL-205ENST00000505998 FKBP8Q14318 412 aa16.8■□□□□ 0.28
NIPBL-205ENST00000505998 SPDYE4A6NLX3 237 aa16.6■□□□□ 0.25
NIPBL-205ENST00000505998 OSCARQ8IYS5 282 aa16.55■□□□□ 0.24
NIPBL-205ENST00000505998 SPDYE2BA6NHP3 402 aa16.44■□□□□ 0.22
NIPBL-205ENST00000505998 SPDYE6P0CI01 402 aa16.44■□□□□ 0.22
NIPBL-205ENST00000505998 SPDYE2Q495Y8 402 aa16.44■□□□□ 0.22
NIPBL-205ENST00000505998 ZNF692Q9BU19 519 aaPredicted RBP16.42■□□□□ 0.22
NIPBL-205ENST00000505998 PROM2Q8N271 834 aa16.3■□□□□ 0.2
NIPBL-205ENST00000505998 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
NIPBL-205ENST00000505998 SSUH2Q9Y2M2 353 aa16.3■□□□□ 0.2
NIPBL-205ENST00000505998 PABPN1Q86U42 306 aaKnown RBP eCLIP16.2■□□□□ 0.18
NIPBL-205ENST00000505998 FBXO3Q9UK99 471 aa16.17■□□□□ 0.18
NIPBL-205ENST00000505998 AKT1S1Q96B36 256 aa16.12■□□□□ 0.17
NIPBL-205ENST00000505998 STAG3Q9UJ98 1225 aa15.99■□□□□ 0.15
NIPBL-205ENST00000505998 REM2Q8IYK8 340 aaPredicted RBP15.96■□□□□ 0.15
NIPBL-205ENST00000505998 SPDYE1Q8NFV5 336 aaPredicted RBP15.93■□□□□ 0.14
NIPBL-205ENST00000505998 VASPP50552 380 aaPredicted RBP15.92■□□□□ 0.14
NIPBL-205ENST00000505998 CLEC11AQ9Y240 323 aa15.86■□□□□ 0.13
NIPBL-205ENST00000505998 PITPNM1O00562 1244 aa15.76■□□□□ 0.11
NIPBL-205ENST00000505998 PLCD3Q8N3E9 789 aa15.75■□□□□ 0.11
NIPBL-205ENST00000505998 MIER1Q8N108 512 aa15.74■□□□□ 0.11
NIPBL-205ENST00000505998 PRR29P0C7W0 189 aa15.73■□□□□ 0.11
NIPBL-205ENST00000505998 PLEKHG5O94827 1062 aa15.69■□□□□ 0.1
NIPBL-205ENST00000505998 IFNLR1Q8IU57 520 aaPredicted RBP15.69■□□□□ 0.1
NIPBL-205ENST00000505998 AMER1Q5JTC6 1135 aaPredicted RBP15.65■□□□□ 0.1
NIPBL-205ENST00000505998 KLHL34Q8N239 644 aa15.65■□□□□ 0.1
NIPBL-205ENST00000505998 RTN4Q9NQC3 1192 aaKnown RBP15.57■□□□□ 0.08
NIPBL-205ENST00000505998 ZBTB47Q9UFB7 747 aaPredicted RBP15.57■□□□□ 0.08
NIPBL-205ENST00000505998 CREBZFQ9NS37 354 aa15.54■□□□□ 0.08
NIPBL-205ENST00000505998 CHRDL2Q6WN34 429 aa15.52■□□□□ 0.08
NIPBL-205ENST00000505998 SPOCK2Q92563 424 aa15.51■□□□□ 0.07
NIPBL-205ENST00000505998 FXR2P51116 673 aaKnown RBP eCLIP15.42■□□□□ 0.06
NIPBL-205ENST00000505998 CHADLQ6NUI6 762 aa15.42■□□□□ 0.06
NIPBL-205ENST00000505998 PRKAR2AP13861 404 aaKnown RBP15.39■□□□□ 0.05
NIPBL-205ENST00000505998 MNX1P50219 401 aaPredicted RBP15.37■□□□□ 0.05
NIPBL-205ENST00000505998 PIP4P2Q8N4L2 257 aa15.36■□□□□ 0.05
NIPBL-205ENST00000505998 NPM1P06748 294 aaKnown RBP eCLIP15.34■□□□□ 0.05
NIPBL-205ENST00000505998 FARP1Q9Y4F1 1045 aaPredicted RBP15.3■□□□□ 0.04
NIPBL-205ENST00000505998 NUBP1P53384 320 aa15.28■□□□□ 0.04
NIPBL-205ENST00000505998 CIZ1Q9ULV3 898 aaPredicted RBP15.26■□□□□ 0.03
NIPBL-205ENST00000505998 PKD2Q13563 968 aa15.23■□□□□ 0.03
NIPBL-205ENST00000505998 GSE1Q14687 1217 aa15.2■□□□□ 0.02
NIPBL-205ENST00000505998 FAM212AQ96EL1 285 aa15.2■□□□□ 0.02
NIPBL-205ENST00000505998 DCAF8Q5TAQ9 597 aa15.19■□□□□ 0.02
NIPBL-205ENST00000505998 RASEFQ8IZ41 740 aa15.18■□□□□ 0.02
NIPBL-205ENST00000505998 ECM2O94769 699 aaPredicted RBP15.16■□□□□ 0.02
NIPBL-205ENST00000505998 TRIM41Q8WV44 630 aa15.1■□□□□ 0.01
NIPBL-205ENST00000505998 TSPYL2Q9H2G4 693 aaPredicted RBP15.08■□□□□ 0
NIPBL-205ENST00000505998 PAK3O75914 559 aaPredicted RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms