RNA–Protein interactions for RNA: ENST00000505657.1

CHD1-203, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 3

Gene CHD1, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-203ENST00000505657 AEBP2Q6ZN18 517 aaPredicted RBP24.17■■□□□ 1.46
CHD1-203ENST00000505657 CHIC1Q5VXU3 224 aa22.66■■□□□ 1.22
CHD1-203ENST00000505657 SENP3Q9H4L4 574 aaPredicted RBP20.59■□□□□ 0.89
CHD1-203ENST00000505657 PHF23Q9BUL5 403 aaPredicted RBP20.34■□□□□ 0.85
CHD1-203ENST00000505657 FOXD1Q16676 465 aa19.27■□□□□ 0.68
CHD1-203ENST00000505657 POTEDQ86YR6 584 aa18.13■□□□□ 0.49
CHD1-203ENST00000505657 MSH5O43196 834 aa18.07■□□□□ 0.48
CHD1-203ENST00000505657 PLPPR3Q6T4P5 718 aa17.97■□□□□ 0.47
CHD1-203ENST00000505657 PIAS4Q8N2W9 510 aaPredicted RBP17.93■□□□□ 0.46
CHD1-203ENST00000505657 PPP6R1Q9UPN7 881 aa17.86■□□□□ 0.45
CHD1-203ENST00000505657 ADRA2BP18089 450 aa17.79■□□□□ 0.44
CHD1-203ENST00000505657 MAPK8IP2Q13387 824 aaPredicted RBP16.43■□□□□ 0.22
CHD1-203ENST00000505657 DMRT2Q9Y5R5 561 aa16.3■□□□□ 0.2
CHD1-203ENST00000505657 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
CHD1-203ENST00000505657 PPP4R3CPQ6ZMV5 832 aa15.75■□□□□ 0.11
CHD1-203ENST00000505657 CACNB1Q02641 598 aaPredicted RBP15.71■□□□□ 0.11
CHD1-203ENST00000505657 DCAF8L1A6NGE4 600 aa15.68■□□□□ 0.1
CHD1-203ENST00000505657 HOXD11P31277 338 aaPredicted RBP15.6■□□□□ 0.09
CHD1-203ENST00000505657 CNKSR2Q8WXI2 1034 aa15.49■□□□□ 0.07
CHD1-203ENST00000505657 RNF39Q9H2S5 420 aa15.43■□□□□ 0.06
CHD1-203ENST00000505657 RNF216Q9NWF9 866 aaPredicted RBP15.41■□□□□ 0.06
CHD1-203ENST00000505657 C1QBPQ07021 282 aaKnown RBP15.16■□□□□ 0.02
CHD1-203ENST00000505657 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
CHD1-203ENST00000505657 NCBP3Q53F19 620 aaKnown RBP15.03■□□□□ -0
CHD1-203ENST00000505657 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.88□□□□□ -0.03
CHD1-203ENST00000505657 NPM3O75607 178 aaKnown RBP14.85□□□□□ -0.03
CHD1-203ENST00000505657 KCNA4P22459 653 aa14.66□□□□□ -0.06
CHD1-203ENST00000505657 U3KPZ7 1027 aaPredicted RBP14.54□□□□□ -0.08
CHD1-203ENST00000505657 SPINK5Q9NQ38 1064 aaPredicted RBP14.43□□□□□ -0.1
CHD1-203ENST00000505657 CAPN15O75808 1086 aa14.4□□□□□ -0.1
CHD1-203ENST00000505657 DSG3P32926 999 aa14.38□□□□□ -0.11
CHD1-203ENST00000505657 SLC4A2P04920 1241 aa14.27□□□□□ -0.13
CHD1-203ENST00000505657 POTEHQ6S545 545 aa14.15□□□□□ -0.14
CHD1-203ENST00000505657 TRHP20396 242 aaPredicted RBP14.12□□□□□ -0.15
CHD1-203ENST00000505657 ABCB7O75027 752 aa14.07□□□□□ -0.16
CHD1-203ENST00000505657 APLP2Q06481 763 aa14.03□□□□□ -0.16
CHD1-203ENST00000505657 ZNF219Q9P2Y4 722 aaPredicted RBP14.02□□□□□ -0.17
CHD1-203ENST00000505657 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.97□□□□□ -0.17
CHD1-203ENST00000505657 HNRNPUL2Q1KMD3 747 aaKnown RBP13.97□□□□□ -0.17
CHD1-203ENST00000505657 SLC4A1APQ9BWU0 796 aaKnown RBP13.91□□□□□ -0.18
CHD1-203ENST00000505657 SAMD1Q6SPF0 538 aaPredicted RBP13.9□□□□□ -0.18
CHD1-203ENST00000505657 MYCNP04198 464 aaPredicted RBP13.7□□□□□ -0.22
CHD1-203ENST00000505657 POLA2Q14181 598 aa13.68□□□□□ -0.22
CHD1-203ENST00000505657 RBM42Q9BTD8 480 aaKnown RBP13.66□□□□□ -0.22
CHD1-203ENST00000505657 EHMT2Q96KQ7 1210 aa13.64□□□□□ -0.23
CHD1-203ENST00000505657 ZBTB22O15209 634 aa13.54□□□□□ -0.24
CHD1-203ENST00000505657 CHRDL2Q6WN34 429 aa13.51□□□□□ -0.25
CHD1-203ENST00000505657 ATF5Q9Y2D1 282 aaPredicted RBP13.49□□□□□ -0.25
CHD1-203ENST00000505657 CSRNP3Q8WYN3 585 aa13.45□□□□□ -0.26
CHD1-203ENST00000505657 FOXD4L1Q9NU39 408 aa13.43□□□□□ -0.26
CHD1-203ENST00000505657 AKT1S1Q96B36 256 aa13.33□□□□□ -0.28
CHD1-203ENST00000505657 ZBTB12Q9Y330 459 aaPredicted RBP13.3□□□□□ -0.28
CHD1-203ENST00000505657 REM2Q8IYK8 340 aaPredicted RBP13.24□□□□□ -0.29
CHD1-203ENST00000505657 OSCARQ8IYS5 282 aa13.24□□□□□ -0.29
CHD1-203ENST00000505657 PIP4P2Q8N4L2 257 aa13.16□□□□□ -0.3
CHD1-203ENST00000505657 SP7Q8TDD2 431 aaPredicted RBP13.13□□□□□ -0.31
CHD1-203ENST00000505657 PITPNM1O00562 1244 aa13.09□□□□□ -0.31
CHD1-203ENST00000505657 FXR2P51116 673 aaKnown RBP eCLIP13.03□□□□□ -0.32
CHD1-203ENST00000505657 ATXN8OSP0DMR3 200 aa13.02□□□□□ -0.33
CHD1-203ENST00000505657 HAX1O00165 279 aa12.99□□□□□ -0.33
CHD1-203ENST00000505657 SPDYE2BA6NHP3 402 aa12.9□□□□□ -0.34
CHD1-203ENST00000505657 SPDYE6P0CI01 402 aa12.9□□□□□ -0.34
CHD1-203ENST00000505657 FBLN2P98095 1184 aa12.9□□□□□ -0.34
CHD1-203ENST00000505657 SPDYE2Q495Y8 402 aa12.9□□□□□ -0.34
CHD1-203ENST00000505657 EVX2Q03828 476 aa12.86□□□□□ -0.35
CHD1-203ENST00000505657 MKRN4PQ13434 485 aaPredicted RBP12.82□□□□□ -0.36
CHD1-203ENST00000505657 CLEC11AQ9Y240 323 aa12.78□□□□□ -0.36
CHD1-203ENST00000505657 PRKAR2AP13861 404 aaKnown RBP12.75□□□□□ -0.37
CHD1-203ENST00000505657 SPDYE1Q8NFV5 336 aaPredicted RBP12.74□□□□□ -0.37
CHD1-203ENST00000505657 ZNF692Q9BU19 519 aaPredicted RBP12.74□□□□□ -0.37
CHD1-203ENST00000505657 SSUH2Q9Y2M2 353 aa12.71□□□□□ -0.37
CHD1-203ENST00000505657 C19orf67A6NJJ6 358 aa12.62□□□□□ -0.39
CHD1-203ENST00000505657 CHADLQ6NUI6 762 aa12.58□□□□□ -0.4
CHD1-203ENST00000505657 PABPN1Q86U42 306 aaKnown RBP eCLIP12.55□□□□□ -0.4
CHD1-203ENST00000505657 PRR29P0C7W0 189 aa12.52□□□□□ -0.41
CHD1-203ENST00000505657 GABBR2O75899 941 aa12.51□□□□□ -0.41
CHD1-203ENST00000505657 LHX8Q68G74 356 aa12.34□□□□□ -0.43
CHD1-203ENST00000505657 FARP1Q9Y4F1 1045 aaPredicted RBP12.34□□□□□ -0.43
CHD1-203ENST00000505657 CD44P16070 742 aaKnown RBP12.32□□□□□ -0.44
CHD1-203ENST00000505657 POTEIP0CG38 1075 aa12.26□□□□□ -0.45
CHD1-203ENST00000505657 CREBZFQ9NS37 354 aa12.16□□□□□ -0.46
CHD1-203ENST00000505657 CLCN6P51797 869 aa12.14□□□□□ -0.47
CHD1-203ENST00000505657 FKBP8Q14318 412 aa12.13□□□□□ -0.47
CHD1-203ENST00000505657 ZRANB1Q9UGI0 708 aa12.12□□□□□ -0.47
CHD1-203ENST00000505657 ZNF579Q8NAF0 562 aaKnown RBP12.1□□□□□ -0.47
CHD1-203ENST00000505657 DCBLD2Q96PD2 775 aa12.1□□□□□ -0.47
CHD1-203ENST00000505657 STAG3Q9UJ98 1225 aa12.1□□□□□ -0.47
CHD1-203ENST00000505657 SPDYE4A6NLX3 237 aa12.07□□□□□ -0.48
CHD1-203ENST00000505657 GALR2O43603 387 aaPredicted RBP12.01□□□□□ -0.49
CHD1-203ENST00000505657 PHF12Q96QT6 1004 aa11.95□□□□□ -0.5
CHD1-203ENST00000505657 PAK3O75914 559 aaPredicted RBP11.92□□□□□ -0.5
CHD1-203ENST00000505657 MNX1P50219 401 aaPredicted RBP11.91□□□□□ -0.5
CHD1-203ENST00000505657 NPM1P06748 294 aaKnown RBP eCLIP11.89□□□□□ -0.51
CHD1-203ENST00000505657 POTEB2H3BUK9 544 aa11.87□□□□□ -0.51
CHD1-203ENST00000505657 PROM2Q8N271 834 aa11.87□□□□□ -0.51
CHD1-203ENST00000505657 OTUD5Q96G74 571 aa11.85□□□□□ -0.51
CHD1-203ENST00000505657 PELP1Q8IZL8 1130 aaKnown RBP11.83□□□□□ -0.52
CHD1-203ENST00000505657 MS4A3Q96HJ5 214 aa11.77□□□□□ -0.53
CHD1-203ENST00000505657 PLSCR2Q9NRY7 297 aa11.76□□□□□ -0.53
CHD1-203ENST00000505657 TSPYL2Q9H2G4 693 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms