RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 AEBP2Q6ZN18 517 aaPredicted RBP21.6■■□□□ 1.05
USP54-217ENST00000498213 CHIC1Q5VXU3 224 aa20.44■□□□□ 0.86
USP54-217ENST00000498213 SENP3Q9H4L4 574 aaPredicted RBP18.45■□□□□ 0.54
USP54-217ENST00000498213 PHF23Q9BUL5 403 aaPredicted RBP18.2■□□□□ 0.5
USP54-217ENST00000498213 FOXD1Q16676 465 aa17.2■□□□□ 0.34
USP54-217ENST00000498213 PLPPR3Q6T4P5 718 aa16.3■□□□□ 0.2
USP54-217ENST00000498213 POTEDQ86YR6 584 aa16.26■□□□□ 0.19
USP54-217ENST00000498213 MSH5O43196 834 aa16.15■□□□□ 0.18
USP54-217ENST00000498213 PIAS4Q8N2W9 510 aaPredicted RBP16.07■□□□□ 0.16
USP54-217ENST00000498213 PPP6R1Q9UPN7 881 aa16.01■□□□□ 0.15
USP54-217ENST00000498213 ADRA2BP18089 450 aa15.98■□□□□ 0.15
USP54-217ENST00000498213 MAPK8IP2Q13387 824 aaPredicted RBP14.7□□□□□ -0.06
USP54-217ENST00000498213 SCAF1Q9H7N4 1312 aaKnown RBP14.64□□□□□ -0.07
USP54-217ENST00000498213 DMRT2Q9Y5R5 561 aa14.61□□□□□ -0.07
USP54-217ENST00000498213 PPP4R3CPQ6ZMV5 832 aa14.28□□□□□ -0.12
USP54-217ENST00000498213 DCAF8L1A6NGE4 600 aa14.07□□□□□ -0.16
USP54-217ENST00000498213 HOXD11P31277 338 aaPredicted RBP14.03□□□□□ -0.16
USP54-217ENST00000498213 CNKSR2Q8WXI2 1034 aa14.02□□□□□ -0.17
USP54-217ENST00000498213 CACNB1Q02641 598 aaPredicted RBP13.98□□□□□ -0.17
USP54-217ENST00000498213 RNF216Q9NWF9 866 aaPredicted RBP13.91□□□□□ -0.18
USP54-217ENST00000498213 RNF39Q9H2S5 420 aa13.76□□□□□ -0.21
USP54-217ENST00000498213 NCBP3Q53F19 620 aaKnown RBP13.72□□□□□ -0.21
USP54-217ENST00000498213 C1QBPQ07021 282 aaKnown RBP13.56□□□□□ -0.24
USP54-217ENST00000498213 DNAJC5BQ9UF47 199 aa13.55□□□□□ -0.24
USP54-217ENST00000498213 NPM3O75607 178 aaKnown RBP13.49□□□□□ -0.25
USP54-217ENST00000498213 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP54-217ENST00000498213 KCNA4P22459 653 aa13.17□□□□□ -0.3
USP54-217ENST00000498213 U3KPZ7 1027 aaPredicted RBP13.09□□□□□ -0.31
USP54-217ENST00000498213 CAPN15O75808 1086 aa12.94□□□□□ -0.34
USP54-217ENST00000498213 SPINK5Q9NQ38 1064 aaPredicted RBP12.94□□□□□ -0.34
USP54-217ENST00000498213 SLC4A2P04920 1241 aa12.9□□□□□ -0.34
USP54-217ENST00000498213 DSG3P32926 999 aa12.86□□□□□ -0.35
USP54-217ENST00000498213 APLP2Q06481 763 aa12.74□□□□□ -0.37
USP54-217ENST00000498213 TRHP20396 242 aaPredicted RBP12.72□□□□□ -0.37
USP54-217ENST00000498213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.71□□□□□ -0.37
USP54-217ENST00000498213 HNRNPUL2Q1KMD3 747 aaKnown RBP12.71□□□□□ -0.37
USP54-217ENST00000498213 POTEHQ6S545 545 aa12.69□□□□□ -0.38
USP54-217ENST00000498213 ZNF219Q9P2Y4 722 aaPredicted RBP12.68□□□□□ -0.38
USP54-217ENST00000498213 ABCB7O75027 752 aa12.63□□□□□ -0.39
USP54-217ENST00000498213 SAMD1Q6SPF0 538 aaPredicted RBP12.63□□□□□ -0.39
USP54-217ENST00000498213 MYCNP04198 464 aaPredicted RBP12.5□□□□□ -0.41
USP54-217ENST00000498213 SLC4A1APQ9BWU0 796 aaKnown RBP12.45□□□□□ -0.42
USP54-217ENST00000498213 POLA2Q14181 598 aa12.33□□□□□ -0.44
USP54-217ENST00000498213 FOXD4L1Q9NU39 408 aa12.32□□□□□ -0.44
USP54-217ENST00000498213 RBM42Q9BTD8 480 aaKnown RBP12.29□□□□□ -0.44
USP54-217ENST00000498213 ATF5Q9Y2D1 282 aaPredicted RBP12.2□□□□□ -0.46
USP54-217ENST00000498213 ZBTB22O15209 634 aa12.09□□□□□ -0.47
USP54-217ENST00000498213 ZBTB12Q9Y330 459 aaPredicted RBP12.08□□□□□ -0.48
USP54-217ENST00000498213 CHRDL2Q6WN34 429 aa12.05□□□□□ -0.48
USP54-217ENST00000498213 AKT1S1Q96B36 256 aa11.98□□□□□ -0.49
USP54-217ENST00000498213 OSCARQ8IYS5 282 aa11.95□□□□□ -0.5
USP54-217ENST00000498213 ATXN8OSP0DMR3 200 aa11.94□□□□□ -0.5
USP54-217ENST00000498213 EHMT2Q96KQ7 1210 aa11.9□□□□□ -0.5
USP54-217ENST00000498213 REM2Q8IYK8 340 aaPredicted RBP11.87□□□□□ -0.51
USP54-217ENST00000498213 FBLN2P98095 1184 aa11.76□□□□□ -0.53
USP54-217ENST00000498213 PITPNM1O00562 1244 aa11.74□□□□□ -0.53
USP54-217ENST00000498213 PIP4P2Q8N4L2 257 aa11.74□□□□□ -0.53
USP54-217ENST00000498213 CSRNP3Q8WYN3 585 aa11.74□□□□□ -0.53
USP54-217ENST00000498213 SPDYE2BA6NHP3 402 aa11.7□□□□□ -0.54
USP54-217ENST00000498213 SPDYE6P0CI01 402 aa11.7□□□□□ -0.54
USP54-217ENST00000498213 SPDYE2Q495Y8 402 aa11.7□□□□□ -0.54
USP54-217ENST00000498213 SP7Q8TDD2 431 aaPredicted RBP11.69□□□□□ -0.54
USP54-217ENST00000498213 FXR2P51116 673 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP54-217ENST00000498213 MKRN4PQ13434 485 aaPredicted RBP11.63□□□□□ -0.55
USP54-217ENST00000498213 HAX1O00165 279 aa11.57□□□□□ -0.56
USP54-217ENST00000498213 ZNF692Q9BU19 519 aaPredicted RBP11.56□□□□□ -0.56
USP54-217ENST00000498213 SPDYE1Q8NFV5 336 aaPredicted RBP11.53□□□□□ -0.56
USP54-217ENST00000498213 CLEC11AQ9Y240 323 aa11.53□□□□□ -0.56
USP54-217ENST00000498213 SSUH2Q9Y2M2 353 aa11.52□□□□□ -0.57
USP54-217ENST00000498213 PRKAR2AP13861 404 aaKnown RBP11.45□□□□□ -0.58
USP54-217ENST00000498213 EVX2Q03828 476 aa11.39□□□□□ -0.59
USP54-217ENST00000498213 PABPN1Q86U42 306 aaKnown RBP eCLIP11.38□□□□□ -0.59
USP54-217ENST00000498213 PRR29P0C7W0 189 aa11.31□□□□□ -0.6
USP54-217ENST00000498213 CHADLQ6NUI6 762 aa11.3□□□□□ -0.6
USP54-217ENST00000498213 C19orf67A6NJJ6 358 aa11.28□□□□□ -0.6
USP54-217ENST00000498213 GABBR2O75899 941 aa11.15□□□□□ -0.62
USP54-217ENST00000498213 FARP1Q9Y4F1 1045 aaPredicted RBP11.12□□□□□ -0.63
USP54-217ENST00000498213 CD44P16070 742 aaKnown RBP11.08□□□□□ -0.64
USP54-217ENST00000498213 SPDYE4A6NLX3 237 aa11.06□□□□□ -0.64
USP54-217ENST00000498213 STAG3Q9UJ98 1225 aa11.05□□□□□ -0.64
USP54-217ENST00000498213 CREBZFQ9NS37 354 aa10.99□□□□□ -0.65
USP54-217ENST00000498213 LHX8Q68G74 356 aa10.96□□□□□ -0.65
USP54-217ENST00000498213 CLCN6P51797 869 aa10.94□□□□□ -0.66
USP54-217ENST00000498213 ZRANB1Q9UGI0 708 aa10.92□□□□□ -0.66
USP54-217ENST00000498213 POTEIP0CG38 1075 aa10.89□□□□□ -0.67
USP54-217ENST00000498213 ZNF579Q8NAF0 562 aaKnown RBP10.89□□□□□ -0.67
USP54-217ENST00000498213 DCBLD2Q96PD2 775 aa10.85□□□□□ -0.67
USP54-217ENST00000498213 PAK3O75914 559 aaPredicted RBP10.82□□□□□ -0.68
USP54-217ENST00000498213 NPM1P06748 294 aaKnown RBP eCLIP10.81□□□□□ -0.68
USP54-217ENST00000498213 MNX1P50219 401 aaPredicted RBP10.78□□□□□ -0.68
USP54-217ENST00000498213 GALR2O43603 387 aaPredicted RBP10.77□□□□□ -0.69
USP54-217ENST00000498213 PHF12Q96QT6 1004 aa10.75□□□□□ -0.69
USP54-217ENST00000498213 PROM2Q8N271 834 aa10.74□□□□□ -0.69
USP54-217ENST00000498213 FKBP8Q14318 412 aa10.72□□□□□ -0.69
USP54-217ENST00000498213 PLSCR2Q9NRY7 297 aa10.69□□□□□ -0.7
USP54-217ENST00000498213 TSPYL2Q9H2G4 693 aaPredicted RBP10.62□□□□□ -0.71
USP54-217ENST00000498213 MS4A3Q96HJ5 214 aa10.6□□□□□ -0.71
USP54-217ENST00000498213 PLEKHG5O94827 1062 aa10.59□□□□□ -0.71
USP54-217ENST00000498213 MIER1Q8N108 512 aa10.58□□□□□ -0.72
USP54-217ENST00000498213 PELP1Q8IZL8 1130 aaKnown RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 208.8 ms