RNA–Protein interactions for RNA: ENST00000498205.5

SSR3-209, Transcript of signal sequence receptor subunit 3, humanhuman

TSL 2

Gene SSR3, Length 593 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-209ENST00000498205 AEBP2Q6ZN18 517 aaPredicted RBP25.64■■□□□ 1.7
SSR3-209ENST00000498205 CHIC1Q5VXU3 224 aa25.21■■□□□ 1.63
SSR3-209ENST00000498205 PHF23Q9BUL5 403 aaPredicted RBP22.05■■□□□ 1.12
SSR3-209ENST00000498205 SENP3Q9H4L4 574 aaPredicted RBP21.96■■□□□ 1.11
SSR3-209ENST00000498205 PLPPR3Q6T4P5 718 aa20.56■□□□□ 0.88
SSR3-209ENST00000498205 FOXD1Q16676 465 aa20.23■□□□□ 0.83
SSR3-209ENST00000498205 PPP6R1Q9UPN7 881 aa19.42■□□□□ 0.7
SSR3-209ENST00000498205 ADRA2BP18089 450 aa19.41■□□□□ 0.7
SSR3-209ENST00000498205 PIAS4Q8N2W9 510 aaPredicted RBP19.14■□□□□ 0.65
SSR3-209ENST00000498205 MSH5O43196 834 aa18.83■□□□□ 0.6
SSR3-209ENST00000498205 SCAF1Q9H7N4 1312 aaKnown RBP18.03■□□□□ 0.48
SSR3-209ENST00000498205 PPP4R3CPQ6ZMV5 832 aa18.03■□□□□ 0.48
SSR3-209ENST00000498205 NCBP3Q53F19 620 aaKnown RBP17.7■□□□□ 0.42
SSR3-209ENST00000498205 CNKSR2Q8WXI2 1034 aa17.6■□□□□ 0.41
SSR3-209ENST00000498205 MAPK8IP2Q13387 824 aaPredicted RBP17.57■□□□□ 0.4
SSR3-209ENST00000498205 KCNA4P22459 653 aa17.56■□□□□ 0.4
SSR3-209ENST00000498205 DMRT2Q9Y5R5 561 aa17.49■□□□□ 0.39
SSR3-209ENST00000498205 NPM3O75607 178 aaKnown RBP17.28■□□□□ 0.36
SSR3-209ENST00000498205 RNF216Q9NWF9 866 aaPredicted RBP17.26■□□□□ 0.35
SSR3-209ENST00000498205 HOXD11P31277 338 aaPredicted RBP17.16■□□□□ 0.34
SSR3-209ENST00000498205 DNAJC5BQ9UF47 199 aa16.96■□□□□ 0.31
SSR3-209ENST00000498205 POTEDQ86YR6 584 aa16.95■□□□□ 0.3
SSR3-209ENST00000498205 SLC4A1APQ9BWU0 796 aaKnown RBP16.81■□□□□ 0.28
SSR3-209ENST00000498205 DCAF8L1A6NGE4 600 aa16.67■□□□□ 0.26
SSR3-209ENST00000498205 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.33■□□□□ 0.27e-7■■□□□ 13.2
SSR3-209ENST00000498205 FOXD4L1Q9NU39 408 aa16.28■□□□□ 0.2
SSR3-209ENST00000498205 SLC4A2P04920 1241 aa16.27■□□□□ 0.2
SSR3-209ENST00000498205 EHMT2Q96KQ7 1210 aa16.25■□□□□ 0.19
SSR3-209ENST00000498205 ZBTB22O15209 634 aa16.1■□□□□ 0.17
SSR3-209ENST00000498205 CSRNP3Q8WYN3 585 aa16.09■□□□□ 0.17
SSR3-209ENST00000498205 MYCNP04198 464 aaPredicted RBP16.07■□□□□ 0.16
SSR3-209ENST00000498205 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.04■□□□□ 0.16
SSR3-209ENST00000498205 HNRNPUL2Q1KMD3 747 aaKnown RBP16.04■□□□□ 0.16
SSR3-209ENST00000498205 RNF39Q9H2S5 420 aa16.04■□□□□ 0.16
SSR3-209ENST00000498205 U3KPZ7 1027 aaPredicted RBP16.01■□□□□ 0.15
SSR3-209ENST00000498205 C1QBPQ07021 282 aaKnown RBP15.94■□□□□ 0.14
SSR3-209ENST00000498205 SAMD1Q6SPF0 538 aaPredicted RBP15.92■□□□□ 0.14
SSR3-209ENST00000498205 APLP2Q06481 763 aa15.91■□□□□ 0.14
SSR3-209ENST00000498205 ATXN8OSP0DMR3 200 aa15.8■□□□□ 0.12
SSR3-209ENST00000498205 CACNB1Q02641 598 aaPredicted RBP15.61■□□□□ 0.09
SSR3-209ENST00000498205 ZNF219Q9P2Y4 722 aaPredicted RBP15.58■□□□□ 0.08
SSR3-209ENST00000498205 CAPN15O75808 1086 aa15.52■□□□□ 0.08
SSR3-209ENST00000498205 SPINK5Q9NQ38 1064 aaPredicted RBP15.5■□□□□ 0.07
SSR3-209ENST00000498205 TRHP20396 242 aaPredicted RBP15.44■□□□□ 0.06
SSR3-209ENST00000498205 ATF5Q9Y2D1 282 aaPredicted RBP15.44■□□□□ 0.06
SSR3-209ENST00000498205 DSG3P32926 999 aa15.25■□□□□ 0.03
SSR3-209ENST00000498205 POLA2Q14181 598 aa15.2■□□□□ 0.02
SSR3-209ENST00000498205 ABCB7O75027 752 aa15.14■□□□□ 0.01
SSR3-209ENST00000498205 ZBTB12Q9Y330 459 aaPredicted RBP15.13■□□□□ 0.01
SSR3-209ENST00000498205 FBLN2P98095 1184 aa15.02■□□□□ -0
SSR3-209ENST00000498205 MKRN4PQ13434 485 aaPredicted RBP14.8□□□□□ -0.04
SSR3-209ENST00000498205 RBM42Q9BTD8 480 aaKnown RBP14.7□□□□□ -0.06
SSR3-209ENST00000498205 SPDYE2BA6NHP3 402 aa14.65□□□□□ -0.06
SSR3-209ENST00000498205 SPDYE6P0CI01 402 aa14.65□□□□□ -0.06
SSR3-209ENST00000498205 SPDYE2Q495Y8 402 aa14.65□□□□□ -0.06
SSR3-209ENST00000498205 OSCARQ8IYS5 282 aa14.65□□□□□ -0.06
SSR3-209ENST00000498205 SPDYE4A6NLX3 237 aa14.59□□□□□ -0.07
SSR3-209ENST00000498205 FKBP8Q14318 412 aa14.58□□□□□ -0.08
SSR3-209ENST00000498205 ZNF692Q9BU19 519 aaPredicted RBP14.55□□□□□ -0.08
SSR3-209ENST00000498205 SSUH2Q9Y2M2 353 aa14.48□□□□□ -0.09
SSR3-209ENST00000498205 AKT1S1Q96B36 256 aa14.45□□□□□ -0.1
SSR3-209ENST00000498205 PROM2Q8N271 834 aa14.36□□□□□ -0.11
SSR3-209ENST00000498205 PABPN1Q86U42 306 aaKnown RBP eCLIP14.32□□□□□ -0.12
SSR3-209ENST00000498205 STAG3Q9UJ98 1225 aa14.24□□□□□ -0.13
SSR3-209ENST00000498205 REM2Q8IYK8 340 aaPredicted RBP14.23□□□□□ -0.13
SSR3-209ENST00000498205 FBXO3Q9UK99 471 aa14.23□□□□□ -0.13
SSR3-209ENST00000498205 SPDYE1Q8NFV5 336 aaPredicted RBP14.21□□□□□ -0.13
SSR3-209ENST00000498205 CLEC11AQ9Y240 323 aa14.06□□□□□ -0.16
SSR3-209ENST00000498205 PITPNM1O00562 1244 aa14.04□□□□□ -0.16
SSR3-209ENST00000498205 PRR29P0C7W0 189 aa14□□□□□ -0.17
SSR3-209ENST00000498205 CHRDL2Q6WN34 429 aa13.95□□□□□ -0.18
SSR3-209ENST00000498205 PLEKHG5O94827 1062 aa13.94□□□□□ -0.18
SSR3-209ENST00000498205 VASPP50552 380 aaPredicted RBP13.9□□□□□ -0.18
SSR3-209ENST00000498205 MIER1Q8N108 512 aa13.84□□□□□ -0.19
SSR3-209ENST00000498205 PLCD3Q8N3E9 789 aa13.84□□□□□ -0.19
SSR3-209ENST00000498205 ZBTB47Q9UFB7 747 aaPredicted RBP13.83□□□□□ -0.2
SSR3-209ENST00000498205 FXR2P51116 673 aaKnown RBP eCLIP13.82□□□□□ -0.2
SSR3-209ENST00000498205 CREBZFQ9NS37 354 aa13.74□□□□□ -0.21
SSR3-209ENST00000498205 PIP4P2Q8N4L2 257 aa13.73□□□□□ -0.21
SSR3-209ENST00000498205 PRKAR2AP13861 404 aaKnown RBP13.71□□□□□ -0.21
SSR3-209ENST00000498205 KLHL34Q8N239 644 aa13.68□□□□□ -0.22
SSR3-209ENST00000498205 NPM1P06748 294 aaKnown RBP eCLIP13.66□□□□□ -0.22
SSR3-209ENST00000498205 IFNLR1Q8IU57 520 aaPredicted RBP13.66□□□□□ -0.22
SSR3-209ENST00000498205 CHADLQ6NUI6 762 aa13.63□□□□□ -0.23
SSR3-209ENST00000498205 FARP1Q9Y4F1 1045 aaPredicted RBP13.61□□□□□ -0.23
SSR3-209ENST00000498205 MNX1P50219 401 aaPredicted RBP13.59□□□□□ -0.23
SSR3-209ENST00000498205 SPOCK2Q92563 424 aa13.58□□□□□ -0.24
SSR3-209ENST00000498205 POTEHQ6S545 545 aa13.47□□□□□ -0.25
SSR3-209ENST00000498205 AMER1Q5JTC6 1135 aaPredicted RBP13.45□□□□□ -0.26
SSR3-209ENST00000498205 PAK3O75914 559 aaPredicted RBP13.44□□□□□ -0.26
SSR3-209ENST00000498205 NUBP1P53384 320 aa13.44□□□□□ -0.26
SSR3-209ENST00000498205 FAM212AQ96EL1 285 aa13.44□□□□□ -0.26
SSR3-209ENST00000498205 GSE1Q14687 1217 aa13.43□□□□□ -0.26
SSR3-209ENST00000498205 TRIM41Q8WV44 630 aa13.36□□□□□ -0.27
SSR3-209ENST00000498205 DCAF8Q5TAQ9 597 aa13.35□□□□□ -0.27
SSR3-209ENST00000498205 RASEFQ8IZ41 740 aa13.35□□□□□ -0.27
SSR3-209ENST00000498205 C19orf67A6NJJ6 358 aa13.34□□□□□ -0.27
SSR3-209ENST00000498205 CD44P16070 742 aaKnown RBP13.33□□□□□ -0.28
SSR3-209ENST00000498205 CIZ1Q9ULV3 898 aaPredicted RBP13.32□□□□□ -0.28
SSR3-209ENST00000498205 HAX1O00165 279 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms