RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 AEBP2Q6ZN18 517 aaPredicted RBP23.55■■□□□ 1.36
SMC4-225ENST00000497203 CHIC1Q5VXU3 224 aa21.87■■□□□ 1.09
SMC4-225ENST00000497203 SENP3Q9H4L4 574 aaPredicted RBP20.15■□□□□ 0.82
SMC4-225ENST00000497203 PHF23Q9BUL5 403 aaPredicted RBP19.8■□□□□ 0.76
SMC4-225ENST00000497203 POTEDQ86YR6 584 aa19.43■□□□□ 0.7
SMC4-225ENST00000497203 FOXD1Q16676 465 aa18.97■□□□□ 0.63
SMC4-225ENST00000497203 MSH5O43196 834 aa18.06■□□□□ 0.48
SMC4-225ENST00000497203 PIAS4Q8N2W9 510 aaPredicted RBP17.41■□□□□ 0.38
SMC4-225ENST00000497203 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
SMC4-225ENST00000497203 PPP6R1Q9UPN7 881 aa17.12■□□□□ 0.33
SMC4-225ENST00000497203 ADRA2BP18089 450 aa17.02■□□□□ 0.32
SMC4-225ENST00000497203 CACNB1Q02641 598 aaPredicted RBP16.14■□□□□ 0.17
SMC4-225ENST00000497203 DMRT2Q9Y5R5 561 aa15.85■□□□□ 0.13
SMC4-225ENST00000497203 MAPK8IP2Q13387 824 aaPredicted RBP15.81■□□□□ 0.12
SMC4-225ENST00000497203 SCAF1Q9H7N4 1312 aaKnown RBP15.58■□□□□ 0.08
SMC4-225ENST00000497203 RNF39Q9H2S5 420 aa15.38■□□□□ 0.05
SMC4-225ENST00000497203 DCAF8L1A6NGE4 600 aa15.18■□□□□ 0.02
SMC4-225ENST00000497203 PPP4R3CPQ6ZMV5 832 aa15.07■□□□□ 0
SMC4-225ENST00000497203 HOXD11P31277 338 aaPredicted RBP15.06■□□□□ 0
SMC4-225ENST00000497203 C1QBPQ07021 282 aaKnown RBP15.06■□□□□ 0
SMC4-225ENST00000497203 POTEHQ6S545 545 aa15□□□□□ -0.01
SMC4-225ENST00000497203 CNKSR2Q8WXI2 1034 aa14.88□□□□□ -0.03
SMC4-225ENST00000497203 RNF216Q9NWF9 866 aaPredicted RBP14.85□□□□□ -0.03
SMC4-225ENST00000497203 DNAJC5BQ9UF47 199 aa14.66□□□□□ -0.06
SMC4-225ENST00000497203 KCNA4P22459 653 aa14.53□□□□□ -0.08
SMC4-225ENST00000497203 NCBP3Q53F19 620 aaKnown RBP14.47□□□□□ -0.09
SMC4-225ENST00000497203 NPM3O75607 178 aaKnown RBP14.31□□□□□ -0.12
SMC4-225ENST00000497203 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.27□□□□□ -0.13
SMC4-225ENST00000497203 DSG3P32926 999 aa14.06□□□□□ -0.16
SMC4-225ENST00000497203 U3KPZ7 1027 aaPredicted RBP14□□□□□ -0.17
SMC4-225ENST00000497203 SPINK5Q9NQ38 1064 aaPredicted RBP13.88□□□□□ -0.19
SMC4-225ENST00000497203 CAPN15O75808 1086 aa13.83□□□□□ -0.2
SMC4-225ENST00000497203 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
SMC4-225ENST00000497203 SLC4A2P04920 1241 aa13.67□□□□□ -0.22
SMC4-225ENST00000497203 SP7Q8TDD2 431 aaPredicted RBP13.58□□□□□ -0.24
SMC4-225ENST00000497203 APLP2Q06481 763 aa13.55□□□□□ -0.24
SMC4-225ENST00000497203 ZNF219Q9P2Y4 722 aaPredicted RBP13.54□□□□□ -0.24
SMC4-225ENST00000497203 CHRDL2Q6WN34 429 aa13.52□□□□□ -0.25
SMC4-225ENST00000497203 TRHP20396 242 aaPredicted RBP13.51□□□□□ -0.25
SMC4-225ENST00000497203 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.48□□□□□ -0.25
SMC4-225ENST00000497203 HNRNPUL2Q1KMD3 747 aaKnown RBP13.48□□□□□ -0.25
SMC4-225ENST00000497203 ABCB7O75027 752 aa13.47□□□□□ -0.25
SMC4-225ENST00000497203 ZBTB22O15209 634 aa13.4□□□□□ -0.26
SMC4-225ENST00000497203 SAMD1Q6SPF0 538 aaPredicted RBP13.39□□□□□ -0.27
SMC4-225ENST00000497203 EHMT2Q96KQ7 1210 aa13.37□□□□□ -0.27
SMC4-225ENST00000497203 RBM42Q9BTD8 480 aaKnown RBP13.36□□□□□ -0.27
SMC4-225ENST00000497203 FOXD4L1Q9NU39 408 aa13.36□□□□□ -0.27
SMC4-225ENST00000497203 CSRNP3Q8WYN3 585 aa13.25□□□□□ -0.29
SMC4-225ENST00000497203 MYCNP04198 464 aaPredicted RBP13.19□□□□□ -0.3
SMC4-225ENST00000497203 POLA2Q14181 598 aa13.09□□□□□ -0.31
SMC4-225ENST00000497203 HAX1O00165 279 aa13.01□□□□□ -0.33
SMC4-225ENST00000497203 PIP4P2Q8N4L2 257 aa13.01□□□□□ -0.33
SMC4-225ENST00000497203 ATF5Q9Y2D1 282 aaPredicted RBP12.9□□□□□ -0.34
SMC4-225ENST00000497203 AKT1S1Q96B36 256 aa12.88□□□□□ -0.35
SMC4-225ENST00000497203 ATXN8OSP0DMR3 200 aa12.87□□□□□ -0.35
SMC4-225ENST00000497203 EVX2Q03828 476 aa12.87□□□□□ -0.35
SMC4-225ENST00000497203 ZBTB12Q9Y330 459 aaPredicted RBP12.86□□□□□ -0.35
SMC4-225ENST00000497203 REM2Q8IYK8 340 aaPredicted RBP12.79□□□□□ -0.36
SMC4-225ENST00000497203 FXR2P51116 673 aaKnown RBP eCLIP12.77□□□□□ -0.37
SMC4-225ENST00000497203 PLSCR2Q9NRY7 297 aa12.74□□□□□ -0.37
SMC4-225ENST00000497203 LHX8Q68G74 356 aa12.73□□□□□ -0.37
SMC4-225ENST00000497203 OSCARQ8IYS5 282 aa12.73□□□□□ -0.37
SMC4-225ENST00000497203 PITPNM1O00562 1244 aa12.65□□□□□ -0.38
SMC4-225ENST00000497203 GABBR2O75899 941 aa12.47□□□□□ -0.41
SMC4-225ENST00000497203 SPDYE2BA6NHP3 402 aa12.43□□□□□ -0.42
SMC4-225ENST00000497203 SPDYE6P0CI01 402 aa12.43□□□□□ -0.42
SMC4-225ENST00000497203 SPDYE2Q495Y8 402 aa12.43□□□□□ -0.42
SMC4-225ENST00000497203 C19orf67A6NJJ6 358 aa12.4□□□□□ -0.42
SMC4-225ENST00000497203 FBLN2P98095 1184 aa12.36□□□□□ -0.43
SMC4-225ENST00000497203 MKRN4PQ13434 485 aaPredicted RBP12.34□□□□□ -0.43
SMC4-225ENST00000497203 PRKAR2AP13861 404 aaKnown RBP12.3□□□□□ -0.44
SMC4-225ENST00000497203 SPDYE1Q8NFV5 336 aaPredicted RBP12.28□□□□□ -0.44
SMC4-225ENST00000497203 SSUH2Q9Y2M2 353 aa12.26□□□□□ -0.45
SMC4-225ENST00000497203 POTEIP0CG38 1075 aa12.24□□□□□ -0.45
SMC4-225ENST00000497203 CLEC11AQ9Y240 323 aa12.21□□□□□ -0.45
SMC4-225ENST00000497203 ZNF692Q9BU19 519 aaPredicted RBP12.18□□□□□ -0.46
SMC4-225ENST00000497203 POTEMA6NI47 508 aa12.03□□□□□ -0.48
SMC4-225ENST00000497203 CHADLQ6NUI6 762 aa12.03□□□□□ -0.48
SMC4-225ENST00000497203 PABPN1Q86U42 306 aaKnown RBP eCLIP12□□□□□ -0.49
SMC4-225ENST00000497203 SPDYE4A6NLX3 237 aa11.99□□□□□ -0.49
SMC4-225ENST00000497203 PRR29P0C7W0 189 aa11.98□□□□□ -0.49
SMC4-225ENST00000497203 FKBP8Q14318 412 aa11.97□□□□□ -0.49
SMC4-225ENST00000497203 POTEGQ6S5H5 508 aa11.96□□□□□ -0.49
SMC4-225ENST00000497203 OTUD5Q96G74 571 aa11.96□□□□□ -0.49
SMC4-225ENST00000497203 PCDH10Q9P2E7 1040 aa11.88□□□□□ -0.51
SMC4-225ENST00000497203 CD44P16070 742 aaKnown RBP11.86□□□□□ -0.51
SMC4-225ENST00000497203 CLCN6P51797 869 aa11.86□□□□□ -0.51
SMC4-225ENST00000497203 DCBLD2Q96PD2 775 aa11.85□□□□□ -0.51
SMC4-225ENST00000497203 FARP1Q9Y4F1 1045 aaPredicted RBP11.85□□□□□ -0.51
SMC4-225ENST00000497203 POTEB2H3BUK9 544 aa11.82□□□□□ -0.52
SMC4-225ENST00000497203 PROM2Q8N271 834 aa11.8□□□□□ -0.52
SMC4-225ENST00000497203 ZNF579Q8NAF0 562 aaKnown RBP11.71□□□□□ -0.53
SMC4-225ENST00000497203 CREBZFQ9NS37 354 aa11.66□□□□□ -0.54
SMC4-225ENST00000497203 ZRANB1Q9UGI0 708 aa11.62□□□□□ -0.55
SMC4-225ENST00000497203 STAG3Q9UJ98 1225 aa11.62□□□□□ -0.55
SMC4-225ENST00000497203 LCE2DQ5TA82 110 aaPredicted RBP11.61□□□□□ -0.55
SMC4-225ENST00000497203 GALR2O43603 387 aaPredicted RBP11.57□□□□□ -0.56
SMC4-225ENST00000497203 FBXO3Q9UK99 471 aa11.51□□□□□ -0.57
SMC4-225ENST00000497203 POTEJP0CG39 1038 aa11.49□□□□□ -0.57
SMC4-225ENST00000497203 PELP1Q8IZL8 1130 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 1617.5 ms