RNA–Protein interactions for RNA: ENST00000497171.1

PHC3-216, Transcript of polyhomeotic homolog 3, humanhuman

TSL 2

Gene PHC3, Length 420 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-216ENST00000497171 AEBP2Q6ZN18 517 aaPredicted RBP25.05■■□□□ 1.6
PHC3-216ENST00000497171 CHIC1Q5VXU3 224 aa23.68■■□□□ 1.38
PHC3-216ENST00000497171 SENP3Q9H4L4 574 aaPredicted RBP21.6■■□□□ 1.05
PHC3-216ENST00000497171 PHF23Q9BUL5 403 aaPredicted RBP21.2■□□□□ 0.98
PHC3-216ENST00000497171 FOXD1Q16676 465 aa20.03■□□□□ 0.8
PHC3-216ENST00000497171 MSH5O43196 834 aa18.99■□□□□ 0.63
PHC3-216ENST00000497171 PLPPR3Q6T4P5 718 aa18.9■□□□□ 0.62
PHC3-216ENST00000497171 POTEDQ86YR6 584 aa18.78■□□□□ 0.6
PHC3-216ENST00000497171 PIAS4Q8N2W9 510 aaPredicted RBP18.77■□□□□ 0.6
PHC3-216ENST00000497171 ADRA2BP18089 450 aa18.48■□□□□ 0.55
PHC3-216ENST00000497171 PPP6R1Q9UPN7 881 aa18.48■□□□□ 0.55
PHC3-216ENST00000497171 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
PHC3-216ENST00000497171 DMRT2Q9Y5R5 561 aa17.03■□□□□ 0.32
PHC3-216ENST00000497171 MAPK8IP2Q13387 824 aaPredicted RBP16.99■□□□□ 0.31
PHC3-216ENST00000497171 PPP4R3CPQ6ZMV5 832 aa16.48■□□□□ 0.23
PHC3-216ENST00000497171 DCAF8L1A6NGE4 600 aa16.46■□□□□ 0.23
PHC3-216ENST00000497171 CACNB1Q02641 598 aaPredicted RBP16.43■□□□□ 0.22
PHC3-216ENST00000497171 HOXD11P31277 338 aaPredicted RBP16.29■□□□□ 0.2
PHC3-216ENST00000497171 CNKSR2Q8WXI2 1034 aa16.26■□□□□ 0.19
PHC3-216ENST00000497171 RNF216Q9NWF9 866 aaPredicted RBP16.16■□□□□ 0.18
PHC3-216ENST00000497171 RNF39Q9H2S5 420 aa16.08■□□□□ 0.16
PHC3-216ENST00000497171 NCBP3Q53F19 620 aaKnown RBP15.92■□□□□ 0.14
PHC3-216ENST00000497171 C1QBPQ07021 282 aaKnown RBP15.91■□□□□ 0.14
PHC3-216ENST00000497171 DNAJC5BQ9UF47 199 aa15.83■□□□□ 0.12
PHC3-216ENST00000497171 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.64■□□□□ 0.09
PHC3-216ENST00000497171 NPM3O75607 178 aaKnown RBP15.52■□□□□ 0.08
PHC3-216ENST00000497171 U3KPZ7 1027 aaPredicted RBP15.16■□□□□ 0.02
PHC3-216ENST00000497171 CAPN15O75808 1086 aa15.12■□□□□ 0.01
PHC3-216ENST00000497171 KCNA4P22459 653 aa15□□□□□ -0.01
PHC3-216ENST00000497171 SPINK5Q9NQ38 1064 aaPredicted RBP15□□□□□ -0.01
PHC3-216ENST00000497171 DSG3P32926 999 aa14.98□□□□□ -0.01
PHC3-216ENST00000497171 APLP2Q06481 763 aa14.97□□□□□ -0.01
PHC3-216ENST00000497171 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.86□□□□□ -0.03
PHC3-216ENST00000497171 HNRNPUL2Q1KMD3 747 aaKnown RBP14.86□□□□□ -0.03
PHC3-216ENST00000497171 SLC4A2P04920 1241 aa14.82□□□□□ -0.04
PHC3-216ENST00000497171 ZNF219Q9P2Y4 722 aaPredicted RBP14.82□□□□□ -0.04
PHC3-216ENST00000497171 TRHP20396 242 aaPredicted RBP14.8□□□□□ -0.04
PHC3-216ENST00000497171 POTEHQ6S545 545 aa14.73□□□□□ -0.05
PHC3-216ENST00000497171 SAMD1Q6SPF0 538 aaPredicted RBP14.71□□□□□ -0.05
PHC3-216ENST00000497171 ABCB7O75027 752 aa14.68□□□□□ -0.06
PHC3-216ENST00000497171 MYCNP04198 464 aaPredicted RBP14.46□□□□□ -0.09
PHC3-216ENST00000497171 RBM42Q9BTD8 480 aaKnown RBP14.46□□□□□ -0.09
PHC3-216ENST00000497171 POLA2Q14181 598 aa14.3□□□□□ -0.12
PHC3-216ENST00000497171 SLC4A1APQ9BWU0 796 aaKnown RBP14.21□□□□□ -0.13
PHC3-216ENST00000497171 FOXD4L1Q9NU39 408 aa14.17□□□□□ -0.14
PHC3-216ENST00000497171 CHRDL2Q6WN34 429 aa14.14□□□□□ -0.15
PHC3-216ENST00000497171 ZBTB12Q9Y330 459 aaPredicted RBP14.14□□□□□ -0.15
PHC3-216ENST00000497171 AKT1S1Q96B36 256 aa14□□□□□ -0.17
PHC3-216ENST00000497171 ATF5Q9Y2D1 282 aaPredicted RBP13.96□□□□□ -0.17
PHC3-216ENST00000497171 OSCARQ8IYS5 282 aa13.86□□□□□ -0.19
PHC3-216ENST00000497171 REM2Q8IYK8 340 aaPredicted RBP13.82□□□□□ -0.2
PHC3-216ENST00000497171 ATXN8OSP0DMR3 200 aa13.77□□□□□ -0.21
PHC3-216ENST00000497171 SP7Q8TDD2 431 aaPredicted RBP13.72□□□□□ -0.21
PHC3-216ENST00000497171 ZBTB22O15209 634 aa13.7□□□□□ -0.22
PHC3-216ENST00000497171 PIP4P2Q8N4L2 257 aa13.7□□□□□ -0.22
PHC3-216ENST00000497171 FBLN2P98095 1184 aa13.69□□□□□ -0.22
PHC3-216ENST00000497171 PITPNM1O00562 1244 aa13.66□□□□□ -0.22
PHC3-216ENST00000497171 SPDYE2BA6NHP3 402 aa13.61□□□□□ -0.23
PHC3-216ENST00000497171 SPDYE6P0CI01 402 aa13.61□□□□□ -0.23
PHC3-216ENST00000497171 SPDYE2Q495Y8 402 aa13.61□□□□□ -0.23
PHC3-216ENST00000497171 HAX1O00165 279 aa13.6□□□□□ -0.23
PHC3-216ENST00000497171 FXR2P51116 673 aaKnown RBP eCLIP13.58□□□□□ -0.24
PHC3-216ENST00000497171 SPDYE1Q8NFV5 336 aaPredicted RBP13.46□□□□□ -0.25
PHC3-216ENST00000497171 CLEC11AQ9Y240 323 aa13.43□□□□□ -0.26
PHC3-216ENST00000497171 ZNF692Q9BU19 519 aaPredicted RBP13.4□□□□□ -0.26
PHC3-216ENST00000497171 PRKAR2AP13861 404 aaKnown RBP13.35□□□□□ -0.27
PHC3-216ENST00000497171 MKRN4PQ13434 485 aaPredicted RBP13.33□□□□□ -0.28
PHC3-216ENST00000497171 SSUH2Q9Y2M2 353 aa13.32□□□□□ -0.28
PHC3-216ENST00000497171 EVX2Q03828 476 aa13.21□□□□□ -0.29
PHC3-216ENST00000497171 PRR29P0C7W0 189 aa13.18□□□□□ -0.3
PHC3-216ENST00000497171 PABPN1Q86U42 306 aaKnown RBP eCLIP13.17□□□□□ -0.3
PHC3-216ENST00000497171 C19orf67A6NJJ6 358 aa13.15□□□□□ -0.3
PHC3-216ENST00000497171 CHADLQ6NUI6 762 aa13.09□□□□□ -0.31
PHC3-216ENST00000497171 GABBR2O75899 941 aa13.03□□□□□ -0.32
PHC3-216ENST00000497171 CD44P16070 742 aaKnown RBP12.93□□□□□ -0.34
PHC3-216ENST00000497171 CSRNP3Q8WYN3 585 aa12.92□□□□□ -0.34
PHC3-216ENST00000497171 FARP1Q9Y4F1 1045 aaPredicted RBP12.92□□□□□ -0.34
PHC3-216ENST00000497171 CLCN6P51797 869 aa12.89□□□□□ -0.35
PHC3-216ENST00000497171 LHX8Q68G74 356 aa12.86□□□□□ -0.35
PHC3-216ENST00000497171 STAG3Q9UJ98 1225 aa12.86□□□□□ -0.35
PHC3-216ENST00000497171 DCBLD2Q96PD2 775 aa12.75□□□□□ -0.37
PHC3-216ENST00000497171 EHMT2Q96KQ7 1210 aa12.73□□□□□ -0.37
PHC3-216ENST00000497171 SPDYE4A6NLX3 237 aa12.72□□□□□ -0.37
PHC3-216ENST00000497171 ZRANB1Q9UGI0 708 aa12.72□□□□□ -0.37
PHC3-216ENST00000497171 PAK3O75914 559 aaPredicted RBP12.7□□□□□ -0.38
PHC3-216ENST00000497171 ZNF579Q8NAF0 562 aaKnown RBP12.7□□□□□ -0.38
PHC3-216ENST00000497171 CREBZFQ9NS37 354 aa12.68□□□□□ -0.38
PHC3-216ENST00000497171 POTEIP0CG38 1075 aa12.65□□□□□ -0.38
PHC3-216ENST00000497171 NPM1P06748 294 aaKnown RBP eCLIP12.61□□□□□ -0.39
PHC3-216ENST00000497171 GALR2O43603 387 aaPredicted RBP12.51□□□□□ -0.41
PHC3-216ENST00000497171 PHF12Q96QT6 1004 aa12.46□□□□□ -0.41
PHC3-216ENST00000497171 MNX1P50219 401 aaPredicted RBP12.38□□□□□ -0.43
PHC3-216ENST00000497171 PLEKHG5O94827 1062 aa12.36□□□□□ -0.43
PHC3-216ENST00000497171 MS4A3Q96HJ5 214 aa12.3□□□□□ -0.44
PHC3-216ENST00000497171 OTUD5Q96G74 571 aa12.29□□□□□ -0.44
PHC3-216ENST00000497171 TSPYL2Q9H2G4 693 aaPredicted RBP12.29□□□□□ -0.44
PHC3-216ENST00000497171 SLC39A7Q92504 469 aa12.28□□□□□ -0.44
PHC3-216ENST00000497171 PLSCR2Q9NRY7 297 aa12.28□□□□□ -0.44
PHC3-216ENST00000497171 PROM2Q8N271 834 aa12.26□□□□□ -0.45
PHC3-216ENST00000497171 METRNQ9UJH8 293 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms