RNA–Protein interactions for RNA: ENST00000496076.1

CLTC-208, Transcript of clathrin heavy chain, humanhuman

TSL 2

Gene CLTC, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTC-208ENST00000496076 AEBP2Q6ZN18 517 aaPredicted RBP33.37■■■□□ 2.93
CLTC-208ENST00000496076 CHIC1Q5VXU3 224 aa31.72■■■□□ 2.67
CLTC-208ENST00000496076 SENP3Q9H4L4 574 aaPredicted RBP28.44■■■□□ 2.14
CLTC-208ENST00000496076 PHF23Q9BUL5 403 aaPredicted RBP28.11■■■□□ 2.09
CLTC-208ENST00000496076 FOXD1Q16676 465 aa26.52■■□□□ 1.84
CLTC-208ENST00000496076 PLPPR3Q6T4P5 718 aa25.37■■□□□ 1.65
CLTC-208ENST00000496076 PPP6R1Q9UPN7 881 aa24.85■■□□□ 1.57
CLTC-208ENST00000496076 MSH5O43196 834 aa24.79■■□□□ 1.56
CLTC-208ENST00000496076 PIAS4Q8N2W9 510 aaPredicted RBP24.79■■□□□ 1.56
CLTC-208ENST00000496076 ADRA2BP18089 450 aa24.78■■□□□ 1.56
CLTC-208ENST00000496076 POTEDQ86YR6 584 aa24.13■■□□□ 1.45
CLTC-208ENST00000496076 MAPK8IP2Q13387 824 aaPredicted RBP22.76■■□□□ 1.23
CLTC-208ENST00000496076 SCAF1Q9H7N4 1312 aaKnown RBP22.67■■□□□ 1.22
CLTC-208ENST00000496076 DMRT2Q9Y5R5 561 aa22.56■■□□□ 1.2
CLTC-208ENST00000496076 PPP4R3CPQ6ZMV5 832 aa22.25■■□□□ 1.15
CLTC-208ENST00000496076 CNKSR2Q8WXI2 1034 aa21.82■■□□□ 1.08
CLTC-208ENST00000496076 HOXD11P31277 338 aaPredicted RBP21.75■■□□□ 1.07
CLTC-208ENST00000496076 DCAF8L1A6NGE4 600 aa21.68■■□□□ 1.06
CLTC-208ENST00000496076 RNF216Q9NWF9 866 aaPredicted RBP21.6■■□□□ 1.05
CLTC-208ENST00000496076 NCBP3Q53F19 620 aaKnown RBP21.41■■□□□ 1.02
CLTC-208ENST00000496076 CACNB1Q02641 598 aaPredicted RBP21.28■■□□□ 1
CLTC-208ENST00000496076 RNF39Q9H2S5 420 aa21.16■□□□□ 0.98
CLTC-208ENST00000496076 NPM3O75607 178 aaKnown RBP21.09■□□□□ 0.97
CLTC-208ENST00000496076 DNAJC5BQ9UF47 199 aa20.97■□□□□ 0.95
CLTC-208ENST00000496076 C1QBPQ07021 282 aaKnown RBP20.86■□□□□ 0.93
CLTC-208ENST00000496076 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.76■□□□□ 0.919e-8■■□□□ 12.3
CLTC-208ENST00000496076 KCNA4P22459 653 aa20.74■□□□□ 0.91
CLTC-208ENST00000496076 U3KPZ7 1027 aaPredicted RBP20.3■□□□□ 0.84
CLTC-208ENST00000496076 SLC4A2P04920 1241 aa20.14■□□□□ 0.81
CLTC-208ENST00000496076 SPINK5Q9NQ38 1064 aaPredicted RBP20.01■□□□□ 0.79
CLTC-208ENST00000496076 CAPN15O75808 1086 aa19.98■□□□□ 0.79
CLTC-208ENST00000496076 DSG3P32926 999 aa19.84■□□□□ 0.77
CLTC-208ENST00000496076 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.74■□□□□ 0.75
CLTC-208ENST00000496076 HNRNPUL2Q1KMD3 747 aaKnown RBP19.74■□□□□ 0.75
CLTC-208ENST00000496076 APLP2Q06481 763 aa19.73■□□□□ 0.75
CLTC-208ENST00000496076 TRHP20396 242 aaPredicted RBP19.68■□□□□ 0.74
CLTC-208ENST00000496076 SAMD1Q6SPF0 538 aaPredicted RBP19.63■□□□□ 0.73
CLTC-208ENST00000496076 ZNF219Q9P2Y4 722 aaPredicted RBP19.61■□□□□ 0.73
CLTC-208ENST00000496076 SLC4A1APQ9BWU0 796 aaKnown RBP19.59■□□□□ 0.73
CLTC-208ENST00000496076 ABCB7O75027 752 aa19.53■□□□□ 0.72
CLTC-208ENST00000496076 MYCNP04198 464 aaPredicted RBP19.5■□□□□ 0.71
CLTC-208ENST00000496076 FOXD4L1Q9NU39 408 aa19.32■□□□□ 0.68
CLTC-208ENST00000496076 POLA2Q14181 598 aa19.17■□□□□ 0.66
CLTC-208ENST00000496076 ATF5Q9Y2D1 282 aaPredicted RBP19.07■□□□□ 0.64
CLTC-208ENST00000496076 ZBTB22O15209 634 aa19.06■□□□□ 0.64
CLTC-208ENST00000496076 POTEHQ6S545 545 aa18.92■□□□□ 0.62
CLTC-208ENST00000496076 RBM42Q9BTD8 480 aaKnown RBP18.92■□□□□ 0.62
CLTC-208ENST00000496076 ATXN8OSP0DMR3 200 aa18.73■□□□□ 0.59
CLTC-208ENST00000496076 ZBTB12Q9Y330 459 aaPredicted RBP18.73■□□□□ 0.59
CLTC-208ENST00000496076 OSCARQ8IYS5 282 aa18.52■□□□□ 0.56
CLTC-208ENST00000496076 CHRDL2Q6WN34 429 aa18.5■□□□□ 0.55
CLTC-208ENST00000496076 AKT1S1Q96B36 256 aa18.5■□□□□ 0.55
CLTC-208ENST00000496076 REM2Q8IYK8 340 aaPredicted RBP18.34■□□□□ 0.53
CLTC-208ENST00000496076 FBLN2P98095 1184 aa18.31■□□□□ 0.52
CLTC-208ENST00000496076 CSRNP3Q8WYN3 585 aa18.23■□□□□ 0.51
CLTC-208ENST00000496076 MKRN4PQ13434 485 aaPredicted RBP18.18■□□□□ 0.5
CLTC-208ENST00000496076 SPDYE2BA6NHP3 402 aa18.17■□□□□ 0.5
CLTC-208ENST00000496076 SPDYE6P0CI01 402 aa18.17■□□□□ 0.5
CLTC-208ENST00000496076 SPDYE2Q495Y8 402 aa18.17■□□□□ 0.5
CLTC-208ENST00000496076 PITPNM1O00562 1244 aa18.13■□□□□ 0.49
CLTC-208ENST00000496076 PIP4P2Q8N4L2 257 aa18.07■□□□□ 0.48
CLTC-208ENST00000496076 EHMT2Q96KQ7 1210 aa18.03■□□□□ 0.48
CLTC-208ENST00000496076 ZNF692Q9BU19 519 aaPredicted RBP18■□□□□ 0.47
CLTC-208ENST00000496076 FXR2P51116 673 aaKnown RBP eCLIP17.96■□□□□ 0.476e-11■■■■□ 22.6
CLTC-208ENST00000496076 SSUH2Q9Y2M2 353 aa17.93■□□□□ 0.46
CLTC-208ENST00000496076 SPDYE1Q8NFV5 336 aaPredicted RBP17.85■□□□□ 0.45
CLTC-208ENST00000496076 CLEC11AQ9Y240 323 aa17.85■□□□□ 0.45
CLTC-208ENST00000496076 HAX1O00165 279 aa17.76■□□□□ 0.43
CLTC-208ENST00000496076 SP7Q8TDD2 431 aaPredicted RBP17.76■□□□□ 0.43
CLTC-208ENST00000496076 PABPN1Q86U42 306 aaKnown RBP eCLIP17.72■□□□□ 0.43
CLTC-208ENST00000496076 PRKAR2AP13861 404 aaKnown RBP17.68■□□□□ 0.42
CLTC-208ENST00000496076 PRR29P0C7W0 189 aa17.55■□□□□ 0.4
CLTC-208ENST00000496076 EVX2Q03828 476 aa17.54■□□□□ 0.4
CLTC-208ENST00000496076 CHADLQ6NUI6 762 aa17.5■□□□□ 0.39
CLTC-208ENST00000496076 C19orf67A6NJJ6 358 aa17.39■□□□□ 0.37
CLTC-208ENST00000496076 SPDYE4A6NLX3 237 aa17.36■□□□□ 0.37
CLTC-208ENST00000496076 STAG3Q9UJ98 1225 aa17.24■□□□□ 0.35
CLTC-208ENST00000496076 FARP1Q9Y4F1 1045 aaPredicted RBP17.23■□□□□ 0.35
CLTC-208ENST00000496076 GABBR2O75899 941 aa17.14■□□□□ 0.33
CLTC-208ENST00000496076 CD44P16070 742 aaKnown RBP17.11■□□□□ 0.33
CLTC-208ENST00000496076 CREBZFQ9NS37 354 aa17.11■□□□□ 0.33
CLTC-208ENST00000496076 PROM2Q8N271 834 aa16.91■□□□□ 0.3
CLTC-208ENST00000496076 ZRANB1Q9UGI0 708 aa16.89■□□□□ 0.29
CLTC-208ENST00000496076 CLCN6P51797 869 aa16.86■□□□□ 0.29
CLTC-208ENST00000496076 ZNF579Q8NAF0 562 aaKnown RBP16.83■□□□□ 0.28
CLTC-208ENST00000496076 NPM1P06748 294 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLTC-208ENST00000496076 MNX1P50219 401 aaPredicted RBP16.81■□□□□ 0.28
CLTC-208ENST00000496076 POTEIP0CG38 1075 aa16.77■□□□□ 0.28
CLTC-208ENST00000496076 PAK3O75914 559 aaPredicted RBP16.75■□□□□ 0.27
CLTC-208ENST00000496076 DCBLD2Q96PD2 775 aa16.7■□□□□ 0.26
CLTC-208ENST00000496076 LHX8Q68G74 356 aa16.67■□□□□ 0.26
CLTC-208ENST00000496076 PHF12Q96QT6 1004 aa16.65■□□□□ 0.26
CLTC-208ENST00000496076 GALR2O43603 387 aaPredicted RBP16.64■□□□□ 0.25
CLTC-208ENST00000496076 MIER1Q8N108 512 aa16.59■□□□□ 0.25
CLTC-208ENST00000496076 PLEKHG5O94827 1062 aa16.54■□□□□ 0.24
CLTC-208ENST00000496076 FKBP8Q14318 412 aa16.54■□□□□ 0.24
CLTC-208ENST00000496076 TSPYL2Q9H2G4 693 aaPredicted RBP16.52■□□□□ 0.24
CLTC-208ENST00000496076 PLCD3Q8N3E9 789 aa16.45■□□□□ 0.22
CLTC-208ENST00000496076 MS4A3Q96HJ5 214 aa16.42■□□□□ 0.22
CLTC-208ENST00000496076 CCDC61Q9Y6R9 512 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms