RNA–Protein interactions for RNA: ENST00000496050.1

SSR3-208, Transcript of signal sequence receptor subunit 3, humanhuman

TSL 4 BASIC

Gene SSR3, Length 579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-208ENST00000496050 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
SSR3-208ENST00000496050 AEBP2Q6ZN18 517 aaPredicted RBP23.29■■□□□ 1.32
SSR3-208ENST00000496050 PHF23Q9BUL5 403 aaPredicted RBP20.52■□□□□ 0.88
SSR3-208ENST00000496050 SENP3Q9H4L4 574 aaPredicted RBP19.76■□□□□ 0.75
SSR3-208ENST00000496050 PLPPR3Q6T4P5 718 aa19.2■□□□□ 0.66
SSR3-208ENST00000496050 FOXD1Q16676 465 aa18.23■□□□□ 0.51
SSR3-208ENST00000496050 ADRA2BP18089 450 aa17.97■□□□□ 0.47
SSR3-208ENST00000496050 PPP6R1Q9UPN7 881 aa17.95■□□□□ 0.46
SSR3-208ENST00000496050 PIAS4Q8N2W9 510 aaPredicted RBP17.33■□□□□ 0.36
SSR3-208ENST00000496050 KCNA4P22459 653 aa17.13■□□□□ 0.33
SSR3-208ENST00000496050 PPP4R3CPQ6ZMV5 832 aa16.97■□□□□ 0.31
SSR3-208ENST00000496050 NCBP3Q53F19 620 aaKnown RBP16.75■□□□□ 0.27
SSR3-208ENST00000496050 MSH5O43196 834 aa16.67■□□□□ 0.26
SSR3-208ENST00000496050 SCAF1Q9H7N4 1312 aaKnown RBP16.56■□□□□ 0.24
SSR3-208ENST00000496050 EHMT2Q96KQ7 1210 aa16.54■□□□□ 0.24
SSR3-208ENST00000496050 SLC4A1APQ9BWU0 796 aaKnown RBP16.45■□□□□ 0.22
SSR3-208ENST00000496050 NPM3O75607 178 aaKnown RBP16.4■□□□□ 0.22
SSR3-208ENST00000496050 CNKSR2Q8WXI2 1034 aa16.4■□□□□ 0.22
SSR3-208ENST00000496050 MAPK8IP2Q13387 824 aaPredicted RBP16.16■□□□□ 0.18
SSR3-208ENST00000496050 CSRNP3Q8WYN3 585 aa16.13■□□□□ 0.17
SSR3-208ENST00000496050 RNF216Q9NWF9 866 aaPredicted RBP15.94■□□□□ 0.14
SSR3-208ENST00000496050 DNAJC5BQ9UF47 199 aa15.88■□□□□ 0.13
SSR3-208ENST00000496050 DMRT2Q9Y5R5 561 aa15.83■□□□□ 0.12
SSR3-208ENST00000496050 ZBTB22O15209 634 aa15.72■□□□□ 0.11
SSR3-208ENST00000496050 HOXD11P31277 338 aaPredicted RBP15.72■□□□□ 0.11
SSR3-208ENST00000496050 FOXD4L1Q9NU39 408 aa15.65■□□□□ 0.1
SSR3-208ENST00000496050 SLC4A2P04920 1241 aa15.35■□□□□ 0.05
SSR3-208ENST00000496050 MYCNP04198 464 aaPredicted RBP15.17■□□□□ 0.02
SSR3-208ENST00000496050 DCAF8L1A6NGE4 600 aa15.16■□□□□ 0.02
SSR3-208ENST00000496050 ATXN8OSP0DMR3 200 aa15.1■□□□□ 0.01
SSR3-208ENST00000496050 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.03■□□□□ -07e-7■■□□□ 13.2
SSR3-208ENST00000496050 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.87□□□□□ -0.03
SSR3-208ENST00000496050 HNRNPUL2Q1KMD3 747 aaKnown RBP14.87□□□□□ -0.03
SSR3-208ENST00000496050 SAMD1Q6SPF0 538 aaPredicted RBP14.82□□□□□ -0.04
SSR3-208ENST00000496050 U3KPZ7 1027 aaPredicted RBP14.76□□□□□ -0.05
SSR3-208ENST00000496050 ATF5Q9Y2D1 282 aaPredicted RBP14.67□□□□□ -0.06
SSR3-208ENST00000496050 APLP2Q06481 763 aa14.6□□□□□ -0.07
SSR3-208ENST00000496050 FKBP8Q14318 412 aa14.56□□□□□ -0.08
SSR3-208ENST00000496050 ZNF219Q9P2Y4 722 aaPredicted RBP14.45□□□□□ -0.1
SSR3-208ENST00000496050 RNF39Q9H2S5 420 aa14.29□□□□□ -0.12
SSR3-208ENST00000496050 TRHP20396 242 aaPredicted RBP14.23□□□□□ -0.13
SSR3-208ENST00000496050 C1QBPQ07021 282 aaKnown RBP14.21□□□□□ -0.13
SSR3-208ENST00000496050 AMER1Q5JTC6 1135 aaPredicted RBP14.21□□□□□ -0.13
SSR3-208ENST00000496050 POTEDQ86YR6 584 aa14.2□□□□□ -0.14
SSR3-208ENST00000496050 SPINK5Q9NQ38 1064 aaPredicted RBP14.2□□□□□ -0.14
SSR3-208ENST00000496050 CAPN15O75808 1086 aa14.17□□□□□ -0.14
SSR3-208ENST00000496050 FBLN2P98095 1184 aa14.13□□□□□ -0.15
SSR3-208ENST00000496050 POLA2Q14181 598 aa14.13□□□□□ -0.15
SSR3-208ENST00000496050 RTN4Q9NQC3 1192 aaKnown RBP14.13□□□□□ -0.15
SSR3-208ENST00000496050 SPDYE4A6NLX3 237 aa14.07□□□□□ -0.16
SSR3-208ENST00000496050 MKRN4PQ13434 485 aaPredicted RBP14.06□□□□□ -0.16
SSR3-208ENST00000496050 FBXO3Q9UK99 471 aa13.98□□□□□ -0.17
SSR3-208ENST00000496050 ZBTB12Q9Y330 459 aaPredicted RBP13.96□□□□□ -0.17
SSR3-208ENST00000496050 ABCB7O75027 752 aa13.9□□□□□ -0.18
SSR3-208ENST00000496050 PROM2Q8N271 834 aa13.86□□□□□ -0.19
SSR3-208ENST00000496050 DSG3P32926 999 aa13.78□□□□□ -0.2
SSR3-208ENST00000496050 VASPP50552 380 aaPredicted RBP13.69□□□□□ -0.22
SSR3-208ENST00000496050 SLC24A1O60721 1099 aa13.66□□□□□ -0.22
SSR3-208ENST00000496050 ZNF692Q9BU19 519 aaPredicted RBP13.65□□□□□ -0.22
SSR3-208ENST00000496050 SPDYE2BA6NHP3 402 aa13.6□□□□□ -0.23
SSR3-208ENST00000496050 SPDYE6P0CI01 402 aa13.6□□□□□ -0.23
SSR3-208ENST00000496050 SPDYE2Q495Y8 402 aa13.6□□□□□ -0.23
SSR3-208ENST00000496050 CACNB1Q02641 598 aaPredicted RBP13.59□□□□□ -0.23
SSR3-208ENST00000496050 OSCARQ8IYS5 282 aa13.56□□□□□ -0.24
SSR3-208ENST00000496050 IFNLR1Q8IU57 520 aaPredicted RBP13.54□□□□□ -0.24
SSR3-208ENST00000496050 STAG3Q9UJ98 1225 aa13.51□□□□□ -0.25
SSR3-208ENST00000496050 SSUH2Q9Y2M2 353 aa13.51□□□□□ -0.25
SSR3-208ENST00000496050 PABPN1Q86U42 306 aaKnown RBP eCLIP13.46□□□□□ -0.25
SSR3-208ENST00000496050 KLHL34Q8N239 644 aa13.42□□□□□ -0.26
SSR3-208ENST00000496050 PLCD3Q8N3E9 789 aa13.36□□□□□ -0.27
SSR3-208ENST00000496050 SPOCK2Q92563 424 aa13.35□□□□□ -0.27
SSR3-208ENST00000496050 MIER1Q8N108 512 aa13.33□□□□□ -0.28
SSR3-208ENST00000496050 PKD2Q13563 968 aa13.28□□□□□ -0.28
SSR3-208ENST00000496050 PLEKHG5O94827 1062 aa13.27□□□□□ -0.29
SSR3-208ENST00000496050 DCAF8L2P0C7V8 631 aa13.25□□□□□ -0.29
SSR3-208ENST00000496050 ZBTB47Q9UFB7 747 aaPredicted RBP13.2□□□□□ -0.3
SSR3-208ENST00000496050 RBM42Q9BTD8 480 aaKnown RBP13.18□□□□□ -0.3
SSR3-208ENST00000496050 ECM2O94769 699 aaPredicted RBP13.14□□□□□ -0.31
SSR3-208ENST00000496050 PLCB2Q00722 1185 aa13.12□□□□□ -0.31
SSR3-208ENST00000496050 AKT1S1Q96B36 256 aa13.12□□□□□ -0.31
SSR3-208ENST00000496050 SPDYE1Q8NFV5 336 aaPredicted RBP13.1□□□□□ -0.31
SSR3-208ENST00000496050 CIZ1Q9ULV3 898 aaPredicted RBP13.05□□□□□ -0.32
SSR3-208ENST00000496050 CLEC11AQ9Y240 323 aa13□□□□□ -0.33
SSR3-208ENST00000496050 PRR29P0C7W0 189 aa12.98□□□□□ -0.33
SSR3-208ENST00000496050 TRIM41Q8WV44 630 aa12.97□□□□□ -0.33
SSR3-208ENST00000496050 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.97□□□□□ -0.33
SSR3-208ENST00000496050 REM2Q8IYK8 340 aaPredicted RBP12.96□□□□□ -0.33
SSR3-208ENST00000496050 BBXQ8WY36 941 aaPredicted RBP12.96□□□□□ -0.33
SSR3-208ENST00000496050 RGL2O15211 777 aa12.95□□□□□ -0.34
SSR3-208ENST00000496050 HAP1P54257 671 aaPredicted RBP12.94□□□□□ -0.34
SSR3-208ENST00000496050 GSE1Q14687 1217 aa12.94□□□□□ -0.34
SSR3-208ENST00000496050 NPM1P06748 294 aaKnown RBP eCLIP12.88□□□□□ -0.35
SSR3-208ENST00000496050 NUBP1P53384 320 aa12.87□□□□□ -0.35
SSR3-208ENST00000496050 DCAF8Q5TAQ9 597 aa12.87□□□□□ -0.35
SSR3-208ENST00000496050 CREBZFQ9NS37 354 aa12.86□□□□□ -0.35
SSR3-208ENST00000496050 CHGAP10645 457 aaKnown RBP12.81□□□□□ -0.36
SSR3-208ENST00000496050 PAXIP1Q6ZW49 1069 aaPredicted RBP12.81□□□□□ -0.36
SSR3-208ENST00000496050 VSIG10Q8N0Z9 540 aa12.8□□□□□ -0.36
SSR3-208ENST00000496050 FAM212AQ96EL1 285 aa12.79□□□□□ -0.36
SSR3-208ENST00000496050 CFAP44Q96MT7 982 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms