RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 AEBP2Q6ZN18 517 aaPredicted RBP30.18■■■□□ 2.42
SMC4-224ENST00000494612 CHIC1Q5VXU3 224 aa28.35■■■□□ 2.13
SMC4-224ENST00000494612 SENP3Q9H4L4 574 aaPredicted RBP25.93■■□□□ 1.74
SMC4-224ENST00000494612 PHF23Q9BUL5 403 aaPredicted RBP25.49■■□□□ 1.67
SMC4-224ENST00000494612 FOXD1Q16676 465 aa24.14■■□□□ 1.45
SMC4-224ENST00000494612 POTEDQ86YR6 584 aa22.86■■□□□ 1.25
SMC4-224ENST00000494612 MSH5O43196 834 aa22.83■■□□□ 1.25
SMC4-224ENST00000494612 PLPPR3Q6T4P5 718 aa22.54■■□□□ 1.2
SMC4-224ENST00000494612 PIAS4Q8N2W9 510 aaPredicted RBP22.53■■□□□ 1.2
SMC4-224ENST00000494612 PPP6R1Q9UPN7 881 aa22.24■■□□□ 1.15
SMC4-224ENST00000494612 ADRA2BP18089 450 aa22.19■■□□□ 1.14
SMC4-224ENST00000494612 MAPK8IP2Q13387 824 aaPredicted RBP20.48■□□□□ 0.87
SMC4-224ENST00000494612 DMRT2Q9Y5R5 561 aa20.46■□□□□ 0.87
SMC4-224ENST00000494612 SCAF1Q9H7N4 1312 aaKnown RBP20.43■□□□□ 0.86
SMC4-224ENST00000494612 CACNB1Q02641 598 aaPredicted RBP19.83■□□□□ 0.77
SMC4-224ENST00000494612 DCAF8L1A6NGE4 600 aa19.74■□□□□ 0.75
SMC4-224ENST00000494612 PPP4R3CPQ6ZMV5 832 aa19.68■□□□□ 0.74
SMC4-224ENST00000494612 HOXD11P31277 338 aaPredicted RBP19.54■□□□□ 0.72
SMC4-224ENST00000494612 CNKSR2Q8WXI2 1034 aa19.42■□□□□ 0.7
SMC4-224ENST00000494612 RNF39Q9H2S5 420 aa19.38■□□□□ 0.69
SMC4-224ENST00000494612 RNF216Q9NWF9 866 aaPredicted RBP19.33■□□□□ 0.68
SMC4-224ENST00000494612 C1QBPQ07021 282 aaKnown RBP19.13■□□□□ 0.65
SMC4-224ENST00000494612 DNAJC5BQ9UF47 199 aa18.96■□□□□ 0.63
SMC4-224ENST00000494612 NCBP3Q53F19 620 aaKnown RBP18.89■□□□□ 0.61
SMC4-224ENST00000494612 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.71■□□□□ 0.59
SMC4-224ENST00000494612 NPM3O75607 178 aaKnown RBP18.51■□□□□ 0.55
SMC4-224ENST00000494612 U3KPZ7 1027 aaPredicted RBP18.18■□□□□ 0.5
SMC4-224ENST00000494612 CAPN15O75808 1086 aa18.11■□□□□ 0.49
SMC4-224ENST00000494612 SPINK5Q9NQ38 1064 aaPredicted RBP18.04■□□□□ 0.48
SMC4-224ENST00000494612 DSG3P32926 999 aa18.02■□□□□ 0.48
SMC4-224ENST00000494612 KCNA4P22459 653 aa17.97■□□□□ 0.47
SMC4-224ENST00000494612 POTEHQ6S545 545 aa17.87■□□□□ 0.45
SMC4-224ENST00000494612 APLP2Q06481 763 aa17.79■□□□□ 0.44
SMC4-224ENST00000494612 SLC4A2P04920 1241 aa17.74■□□□□ 0.43
SMC4-224ENST00000494612 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
SMC4-224ENST00000494612 ZNF219Q9P2Y4 722 aaPredicted RBP17.68■□□□□ 0.42
SMC4-224ENST00000494612 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.66■□□□□ 0.42
SMC4-224ENST00000494612 HNRNPUL2Q1KMD3 747 aaKnown RBP17.66■□□□□ 0.42
SMC4-224ENST00000494612 ABCB7O75027 752 aa17.61■□□□□ 0.41
SMC4-224ENST00000494612 SAMD1Q6SPF0 538 aaPredicted RBP17.5■□□□□ 0.39
SMC4-224ENST00000494612 RBM42Q9BTD8 480 aaKnown RBP17.29■□□□□ 0.36
SMC4-224ENST00000494612 MYCNP04198 464 aaPredicted RBP17.18■□□□□ 0.34
SMC4-224ENST00000494612 POLA2Q14181 598 aa17.13■□□□□ 0.33
SMC4-224ENST00000494612 CHRDL2Q6WN34 429 aa17.02■□□□□ 0.32
SMC4-224ENST00000494612 SLC4A1APQ9BWU0 796 aaKnown RBP16.95■□□□□ 0.3
SMC4-224ENST00000494612 ZBTB12Q9Y330 459 aaPredicted RBP16.82■□□□□ 0.28
SMC4-224ENST00000494612 AKT1S1Q96B36 256 aa16.78■□□□□ 0.28
SMC4-224ENST00000494612 FOXD4L1Q9NU39 408 aa16.78■□□□□ 0.28
SMC4-224ENST00000494612 ATF5Q9Y2D1 282 aaPredicted RBP16.73■□□□□ 0.27
SMC4-224ENST00000494612 REM2Q8IYK8 340 aaPredicted RBP16.6■□□□□ 0.25
SMC4-224ENST00000494612 OSCARQ8IYS5 282 aa16.58■□□□□ 0.24
SMC4-224ENST00000494612 SP7Q8TDD2 431 aaPredicted RBP16.58■□□□□ 0.24
SMC4-224ENST00000494612 ZBTB22O15209 634 aa16.56■□□□□ 0.24
SMC4-224ENST00000494612 PIP4P2Q8N4L2 257 aa16.51■□□□□ 0.23
SMC4-224ENST00000494612 PITPNM1O00562 1244 aa16.42■□□□□ 0.22
SMC4-224ENST00000494612 HAX1O00165 279 aa16.38■□□□□ 0.21
SMC4-224ENST00000494612 FXR2P51116 673 aaKnown RBP eCLIP16.34■□□□□ 0.21
SMC4-224ENST00000494612 ATXN8OSP0DMR3 200 aa16.31■□□□□ 0.2
SMC4-224ENST00000494612 FBLN2P98095 1184 aa16.25■□□□□ 0.19
SMC4-224ENST00000494612 SPDYE2BA6NHP3 402 aa16.22■□□□□ 0.19
SMC4-224ENST00000494612 SPDYE6P0CI01 402 aa16.22■□□□□ 0.19
SMC4-224ENST00000494612 SPDYE2Q495Y8 402 aa16.22■□□□□ 0.19
SMC4-224ENST00000494612 CLEC11AQ9Y240 323 aa16.07■□□□□ 0.16
SMC4-224ENST00000494612 SPDYE1Q8NFV5 336 aaPredicted RBP16.05■□□□□ 0.16
SMC4-224ENST00000494612 PRKAR2AP13861 404 aaKnown RBP16.02■□□□□ 0.16
SMC4-224ENST00000494612 EVX2Q03828 476 aa16.02■□□□□ 0.16
SMC4-224ENST00000494612 ZNF692Q9BU19 519 aaPredicted RBP15.99■□□□□ 0.15
SMC4-224ENST00000494612 MKRN4PQ13434 485 aaPredicted RBP15.93■□□□□ 0.14
SMC4-224ENST00000494612 SSUH2Q9Y2M2 353 aa15.9■□□□□ 0.14
SMC4-224ENST00000494612 CSRNP3Q8WYN3 585 aa15.88■□□□□ 0.13
SMC4-224ENST00000494612 C19orf67A6NJJ6 358 aa15.83■□□□□ 0.12
SMC4-224ENST00000494612 PRR29P0C7W0 189 aa15.74■□□□□ 0.11
SMC4-224ENST00000494612 CHADLQ6NUI6 762 aa15.73■□□□□ 0.11
SMC4-224ENST00000494612 PABPN1Q86U42 306 aaKnown RBP eCLIP15.72■□□□□ 0.11
SMC4-224ENST00000494612 GABBR2O75899 941 aa15.71■□□□□ 0.11
SMC4-224ENST00000494612 EHMT2Q96KQ7 1210 aa15.63■□□□□ 0.09
SMC4-224ENST00000494612 LHX8Q68G74 356 aa15.55■□□□□ 0.08
SMC4-224ENST00000494612 CD44P16070 742 aaKnown RBP15.5■□□□□ 0.07
SMC4-224ENST00000494612 FARP1Q9Y4F1 1045 aaPredicted RBP15.47■□□□□ 0.07
SMC4-224ENST00000494612 CLCN6P51797 869 aa15.41■□□□□ 0.06
SMC4-224ENST00000494612 POTEIP0CG38 1075 aa15.31■□□□□ 0.04
SMC4-224ENST00000494612 DCBLD2Q96PD2 775 aa15.28■□□□□ 0.04
SMC4-224ENST00000494612 STAG3Q9UJ98 1225 aa15.25■□□□□ 0.03
SMC4-224ENST00000494612 ZRANB1Q9UGI0 708 aa15.23■□□□□ 0.03
SMC4-224ENST00000494612 ZNF579Q8NAF0 562 aaKnown RBP15.2■□□□□ 0.02
SMC4-224ENST00000494612 CREBZFQ9NS37 354 aa15.17■□□□□ 0.02
SMC4-224ENST00000494612 PAK3O75914 559 aaPredicted RBP15.1■□□□□ 0.01
SMC4-224ENST00000494612 SPDYE4A6NLX3 237 aa15.08■□□□□ 0
SMC4-224ENST00000494612 GALR2O43603 387 aaPredicted RBP15.04■□□□□ -0
SMC4-224ENST00000494612 NPM1P06748 294 aaKnown RBP eCLIP14.99□□□□□ -0.01
SMC4-224ENST00000494612 PHF12Q96QT6 1004 aa14.93□□□□□ -0.02
SMC4-224ENST00000494612 PLSCR2Q9NRY7 297 aa14.92□□□□□ -0.02
SMC4-224ENST00000494612 OTUD5Q96G74 571 aa14.85□□□□□ -0.03
SMC4-224ENST00000494612 MNX1P50219 401 aaPredicted RBP14.83□□□□□ -0.04
SMC4-224ENST00000494612 POTEB2H3BUK9 544 aa14.8□□□□□ -0.04
SMC4-224ENST00000494612 PELP1Q8IZL8 1130 aaKnown RBP14.74□□□□□ -0.05
SMC4-224ENST00000494612 PROM2Q8N271 834 aa14.73□□□□□ -0.05
SMC4-224ENST00000494612 MS4A3Q96HJ5 214 aa14.73□□□□□ -0.05
SMC4-224ENST00000494612 ASTLQ6HA08 431 aaPredicted RBP14.7□□□□□ -0.06
SMC4-224ENST00000494612 METRNQ9UJH8 293 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms