RNA–Protein interactions for RNA: ENST00000494185.1

LMNB1-207, Transcript of lamin B1, humanhuman

TSL 2

Gene LMNB1, Length 579 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-207ENST00000494185 AEBP2Q6ZN18 517 aaPredicted RBP11.87□□□□□ -0.51
LMNB1-207ENST00000494185 CHIC1Q5VXU3 224 aa11.79□□□□□ -0.52
LMNB1-207ENST00000494185 SENP3Q9H4L4 574 aaPredicted RBP10.36□□□□□ -0.75
LMNB1-207ENST00000494185 PHF23Q9BUL5 403 aaPredicted RBP10.2□□□□□ -0.78
LMNB1-207ENST00000494185 PLPPR3Q6T4P5 718 aa9.7□□□□□ -0.86
LMNB1-207ENST00000494185 FOXD1Q16676 465 aa9.41□□□□□ -0.9
LMNB1-207ENST00000494185 POTEDQ86YR6 584 aa9.25□□□□□ -0.93
LMNB1-207ENST00000494185 ADRA2BP18089 450 aa9.03□□□□□ -0.96
LMNB1-207ENST00000494185 PIAS4Q8N2W9 510 aaPredicted RBP9.02□□□□□ -0.97
LMNB1-207ENST00000494185 PPP6R1Q9UPN7 881 aa8.97□□□□□ -0.97
LMNB1-207ENST00000494185 MSH5O43196 834 aa8.91□□□□□ -0.98
LMNB1-207ENST00000494185 SCAF1Q9H7N4 1312 aaKnown RBP8.58□□□□□ -1.04
LMNB1-207ENST00000494185 PPP4R3CPQ6ZMV5 832 aa8.45□□□□□ -1.06
LMNB1-207ENST00000494185 NCBP3Q53F19 620 aaKnown RBP8.43□□□□□ -1.06
LMNB1-207ENST00000494185 CNKSR2Q8WXI2 1034 aa8.28□□□□□ -1.08
LMNB1-207ENST00000494185 KCNA4P22459 653 aa8.2□□□□□ -1.1
LMNB1-207ENST00000494185 DMRT2Q9Y5R5 561 aa8.18□□□□□ -1.1
LMNB1-207ENST00000494185 MAPK8IP2Q13387 824 aaPredicted RBP8.12□□□□□ -1.11
LMNB1-207ENST00000494185 RNF216Q9NWF9 866 aaPredicted RBP8.11□□□□□ -1.11
LMNB1-207ENST00000494185 NPM3O75607 178 aaKnown RBP8.07□□□□□ -1.12
LMNB1-207ENST00000494185 HOXD11P31277 338 aaPredicted RBP8.01□□□□□ -1.13
LMNB1-207ENST00000494185 SLC4A1APQ9BWU0 796 aaKnown RBP7.94□□□□□ -1.14
LMNB1-207ENST00000494185 DNAJC5BQ9UF47 199 aa7.92□□□□□ -1.14
LMNB1-207ENST00000494185 DCAF8L1A6NGE4 600 aa7.91□□□□□ -1.14
LMNB1-207ENST00000494185 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.74□□□□□ -1.173e-7■■■■□ 21.1
LMNB1-207ENST00000494185 EHMT2Q96KQ7 1210 aa7.73□□□□□ -1.17
LMNB1-207ENST00000494185 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.68□□□□□ -1.18
LMNB1-207ENST00000494185 HNRNPUL2Q1KMD3 747 aaKnown RBP7.68□□□□□ -1.18
LMNB1-207ENST00000494185 FOXD4L1Q9NU39 408 aa7.68□□□□□ -1.18
LMNB1-207ENST00000494185 APLP2Q06481 763 aa7.67□□□□□ -1.18
LMNB1-207ENST00000494185 CACNB1Q02641 598 aaPredicted RBP7.65□□□□□ -1.18
LMNB1-207ENST00000494185 MYCNP04198 464 aaPredicted RBP7.61□□□□□ -1.19
LMNB1-207ENST00000494185 SAMD1Q6SPF0 538 aaPredicted RBP7.58□□□□□ -1.2
LMNB1-207ENST00000494185 CSRNP3Q8WYN3 585 aa7.57□□□□□ -1.2
LMNB1-207ENST00000494185 SLC4A2P04920 1241 aa7.54□□□□□ -1.2
LMNB1-207ENST00000494185 ZBTB22O15209 634 aa7.53□□□□□ -1.2
LMNB1-207ENST00000494185 C1QBPQ07021 282 aaKnown RBP7.52□□□□□ -1.21
LMNB1-207ENST00000494185 RNF39Q9H2S5 420 aa7.5□□□□□ -1.21
LMNB1-207ENST00000494185 ATXN8OSP0DMR3 200 aa7.47□□□□□ -1.21
LMNB1-207ENST00000494185 U3KPZ7 1027 aaPredicted RBP7.46□□□□□ -1.22
LMNB1-207ENST00000494185 ZNF219Q9P2Y4 722 aaPredicted RBP7.4□□□□□ -1.22
LMNB1-207ENST00000494185 CAPN15O75808 1086 aa7.35□□□□□ -1.23
LMNB1-207ENST00000494185 TRHP20396 242 aaPredicted RBP7.28□□□□□ -1.24
LMNB1-207ENST00000494185 ZBTB12Q9Y330 459 aaPredicted RBP7.25□□□□□ -1.25
LMNB1-207ENST00000494185 SPINK5Q9NQ38 1064 aaPredicted RBP7.21□□□□□ -1.26
LMNB1-207ENST00000494185 FBLN2P98095 1184 aa7.17□□□□□ -1.26
LMNB1-207ENST00000494185 ATF5Q9Y2D1 282 aaPredicted RBP7.15□□□□□ -1.26
LMNB1-207ENST00000494185 POLA2Q14181 598 aa7.14□□□□□ -1.27
LMNB1-207ENST00000494185 POTEHQ6S545 545 aa7.14□□□□□ -1.27
LMNB1-207ENST00000494185 DSG3P32926 999 aa7.11□□□□□ -1.27
LMNB1-207ENST00000494185 ABCB7O75027 752 aa7.1□□□□□ -1.27
LMNB1-207ENST00000494185 RBM42Q9BTD8 480 aaKnown RBP7.02□□□□□ -1.29
LMNB1-207ENST00000494185 SPDYE2BA6NHP3 402 aa6.94□□□□□ -1.3
LMNB1-207ENST00000494185 SPDYE6P0CI01 402 aa6.94□□□□□ -1.3
LMNB1-207ENST00000494185 SPDYE2Q495Y8 402 aa6.94□□□□□ -1.3
LMNB1-207ENST00000494185 SPDYE4A6NLX3 237 aa6.89□□□□□ -1.31
LMNB1-207ENST00000494185 FKBP8Q14318 412 aa6.88□□□□□ -1.31
LMNB1-207ENST00000494185 OSCARQ8IYS5 282 aa6.88□□□□□ -1.31
LMNB1-207ENST00000494185 ZNF692Q9BU19 519 aaPredicted RBP6.88□□□□□ -1.31
LMNB1-207ENST00000494185 MKRN4PQ13434 485 aaPredicted RBP6.86□□□□□ -1.31
LMNB1-207ENST00000494185 AKT1S1Q96B36 256 aa6.82□□□□□ -1.32
LMNB1-207ENST00000494185 FBXO3Q9UK99 471 aa6.82□□□□□ -1.32
LMNB1-207ENST00000494185 STAG3Q9UJ98 1225 aa6.81□□□□□ -1.32
LMNB1-207ENST00000494185 SSUH2Q9Y2M2 353 aa6.79□□□□□ -1.32
LMNB1-207ENST00000494185 PLEKHG5O94827 1062 aa6.76□□□□□ -1.33
LMNB1-207ENST00000494185 PABPN1Q86U42 306 aaKnown RBP eCLIP6.75□□□□□ -1.33
LMNB1-207ENST00000494185 SPDYE1Q8NFV5 336 aaPredicted RBP6.75□□□□□ -1.33
LMNB1-207ENST00000494185 PROM2Q8N271 834 aa6.69□□□□□ -1.34
LMNB1-207ENST00000494185 REM2Q8IYK8 340 aaPredicted RBP6.67□□□□□ -1.34
LMNB1-207ENST00000494185 ZBTB47Q9UFB7 747 aaPredicted RBP6.67□□□□□ -1.34
LMNB1-207ENST00000494185 CLEC11AQ9Y240 323 aa6.66□□□□□ -1.34
LMNB1-207ENST00000494185 PRR29P0C7W0 189 aa6.63□□□□□ -1.35
LMNB1-207ENST00000494185 PLCD3Q8N3E9 789 aa6.61□□□□□ -1.35
LMNB1-207ENST00000494185 PITPNM1O00562 1244 aa6.58□□□□□ -1.36
LMNB1-207ENST00000494185 VASPP50552 380 aaPredicted RBP6.57□□□□□ -1.36
LMNB1-207ENST00000494185 MIER1Q8N108 512 aa6.57□□□□□ -1.36
LMNB1-207ENST00000494185 CHRDL2Q6WN34 429 aa6.56□□□□□ -1.36
LMNB1-207ENST00000494185 KLHL34Q8N239 644 aa6.54□□□□□ -1.36
LMNB1-207ENST00000494185 NPM1P06748 294 aaKnown RBP eCLIP6.53□□□□□ -1.36
LMNB1-207ENST00000494185 PAK3O75914 559 aaPredicted RBP6.48□□□□□ -1.37
LMNB1-207ENST00000494185 PRKAR2AP13861 404 aaKnown RBP6.47□□□□□ -1.37
LMNB1-207ENST00000494185 FXR2P51116 673 aaKnown RBP eCLIP6.45□□□□□ -1.38
LMNB1-207ENST00000494185 SPOCK2Q92563 424 aa6.45□□□□□ -1.38
LMNB1-207ENST00000494185 AMER1Q5JTC6 1135 aaPredicted RBP6.44□□□□□ -1.38
LMNB1-207ENST00000494185 PIP4P2Q8N4L2 257 aa6.42□□□□□ -1.38
LMNB1-207ENST00000494185 FAM212AQ96EL1 285 aa6.42□□□□□ -1.38
LMNB1-207ENST00000494185 GSE1Q14687 1217 aa6.41□□□□□ -1.38
LMNB1-207ENST00000494185 SP7Q8TDD2 431 aaPredicted RBP6.41□□□□□ -1.38
LMNB1-207ENST00000494185 TRIM41Q8WV44 630 aa6.41□□□□□ -1.38
LMNB1-207ENST00000494185 CREBZFQ9NS37 354 aa6.41□□□□□ -1.38
LMNB1-207ENST00000494185 IFNLR1Q8IU57 520 aaPredicted RBP6.4□□□□□ -1.38
LMNB1-207ENST00000494185 FARP1Q9Y4F1 1045 aaPredicted RBP6.4□□□□□ -1.38
LMNB1-207ENST00000494185 RTN4Q9NQC3 1192 aaKnown RBP6.39□□□□□ -1.39
LMNB1-207ENST00000494185 CHADLQ6NUI6 762 aa6.37□□□□□ -1.39
LMNB1-207ENST00000494185 TAOK2Q9UL54 1235 aa6.36□□□□□ -1.39
LMNB1-207ENST00000494185 CLCN6P51797 869 aa6.34□□□□□ -1.39
LMNB1-207ENST00000494185 CIZ1Q9ULV3 898 aaPredicted RBP6.34□□□□□ -1.39
LMNB1-207ENST00000494185 DCAF8Q5TAQ9 597 aa6.33□□□□□ -1.4
LMNB1-207ENST00000494185 HAX1O00165 279 aa6.3□□□□□ -1.4
LMNB1-207ENST00000494185 CD44P16070 742 aaKnown RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms