RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 AEBP2Q6ZN18 517 aaPredicted RBP30.88■■■□□ 2.53
SMC4-223ENST00000493695 CHIC1Q5VXU3 224 aa29.44■■■□□ 2.3
SMC4-223ENST00000493695 SENP3Q9H4L4 574 aaPredicted RBP26.39■■□□□ 1.82
SMC4-223ENST00000493695 PHF23Q9BUL5 403 aaPredicted RBP26.07■■□□□ 1.76
SMC4-223ENST00000493695 FOXD1Q16676 465 aa24.56■■□□□ 1.52
SMC4-223ENST00000493695 PLPPR3Q6T4P5 718 aa23.65■■□□□ 1.38
SMC4-223ENST00000493695 PIAS4Q8N2W9 510 aaPredicted RBP23.08■■□□□ 1.29
SMC4-223ENST00000493695 ADRA2BP18089 450 aa23.05■■□□□ 1.28
SMC4-223ENST00000493695 PPP6R1Q9UPN7 881 aa23.04■■□□□ 1.28
SMC4-223ENST00000493695 MSH5O43196 834 aa22.98■■□□□ 1.27
SMC4-223ENST00000493695 POTEDQ86YR6 584 aa22.21■■□□□ 1.15
SMC4-223ENST00000493695 SCAF1Q9H7N4 1312 aaKnown RBP21.13■□□□□ 0.97
SMC4-223ENST00000493695 MAPK8IP2Q13387 824 aaPredicted RBP21.13■□□□□ 0.97
SMC4-223ENST00000493695 DMRT2Q9Y5R5 561 aa20.9■□□□□ 0.94
SMC4-223ENST00000493695 PPP4R3CPQ6ZMV5 832 aa20.75■□□□□ 0.91
SMC4-223ENST00000493695 DCAF8L1A6NGE4 600 aa20.32■□□□□ 0.84
SMC4-223ENST00000493695 CNKSR2Q8WXI2 1034 aa20.31■□□□□ 0.84
SMC4-223ENST00000493695 HOXD11P31277 338 aaPredicted RBP20.13■□□□□ 0.81
SMC4-223ENST00000493695 RNF216Q9NWF9 866 aaPredicted RBP20.07■□□□□ 0.8
SMC4-223ENST00000493695 NCBP3Q53F19 620 aaKnown RBP20.04■□□□□ 0.8
SMC4-223ENST00000493695 CACNB1Q02641 598 aaPredicted RBP19.75■□□□□ 0.75
SMC4-223ENST00000493695 NPM3O75607 178 aaKnown RBP19.67■□□□□ 0.74
SMC4-223ENST00000493695 RNF39Q9H2S5 420 aa19.56■□□□□ 0.72
SMC4-223ENST00000493695 KCNA4P22459 653 aa19.43■□□□□ 0.7
SMC4-223ENST00000493695 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.4■□□□□ 0.7
SMC4-223ENST00000493695 DNAJC5BQ9UF47 199 aa19.32■□□□□ 0.68
SMC4-223ENST00000493695 C1QBPQ07021 282 aaKnown RBP19.31■□□□□ 0.68
SMC4-223ENST00000493695 U3KPZ7 1027 aaPredicted RBP18.86■□□□□ 0.61
SMC4-223ENST00000493695 SLC4A2P04920 1241 aa18.71■□□□□ 0.59
SMC4-223ENST00000493695 CAPN15O75808 1086 aa18.68■□□□□ 0.58
SMC4-223ENST00000493695 SPINK5Q9NQ38 1064 aaPredicted RBP18.61■□□□□ 0.57
SMC4-223ENST00000493695 APLP2Q06481 763 aa18.45■□□□□ 0.54
SMC4-223ENST00000493695 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.43■□□□□ 0.54
SMC4-223ENST00000493695 HNRNPUL2Q1KMD3 747 aaKnown RBP18.43■□□□□ 0.54
SMC4-223ENST00000493695 TRHP20396 242 aaPredicted RBP18.42■□□□□ 0.54
SMC4-223ENST00000493695 SLC4A1APQ9BWU0 796 aaKnown RBP18.42■□□□□ 0.54
SMC4-223ENST00000493695 DSG3P32926 999 aa18.38■□□□□ 0.53
SMC4-223ENST00000493695 SAMD1Q6SPF0 538 aaPredicted RBP18.32■□□□□ 0.52
SMC4-223ENST00000493695 ZNF219Q9P2Y4 722 aaPredicted RBP18.29■□□□□ 0.52
SMC4-223ENST00000493695 ABCB7O75027 752 aa18.24■□□□□ 0.51
SMC4-223ENST00000493695 MYCNP04198 464 aaPredicted RBP18.22■□□□□ 0.51
SMC4-223ENST00000493695 FOXD4L1Q9NU39 408 aa18.09■□□□□ 0.49
SMC4-223ENST00000493695 POLA2Q14181 598 aa17.88■□□□□ 0.45
SMC4-223ENST00000493695 ZBTB22O15209 634 aa17.8■□□□□ 0.44
SMC4-223ENST00000493695 ATF5Q9Y2D1 282 aaPredicted RBP17.77■□□□□ 0.44
SMC4-223ENST00000493695 RBM42Q9BTD8 480 aaKnown RBP17.6■□□□□ 0.41
SMC4-223ENST00000493695 ZBTB12Q9Y330 459 aaPredicted RBP17.49■□□□□ 0.39
SMC4-223ENST00000493695 POTEHQ6S545 545 aa17.47■□□□□ 0.39
SMC4-223ENST00000493695 ATXN8OSP0DMR3 200 aa17.46■□□□□ 0.39
SMC4-223ENST00000493695 OSCARQ8IYS5 282 aa17.3■□□□□ 0.36
SMC4-223ENST00000493695 FBLN2P98095 1184 aa17.18■□□□□ 0.34
SMC4-223ENST00000493695 AKT1S1Q96B36 256 aa17.18■□□□□ 0.34
SMC4-223ENST00000493695 CHRDL2Q6WN34 429 aa17.16■□□□□ 0.34
SMC4-223ENST00000493695 EHMT2Q96KQ7 1210 aa17.14■□□□□ 0.33
SMC4-223ENST00000493695 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
SMC4-223ENST00000493695 REM2Q8IYK8 340 aaPredicted RBP17.04■□□□□ 0.32
SMC4-223ENST00000493695 SPDYE2BA6NHP3 402 aa16.93■□□□□ 0.3
SMC4-223ENST00000493695 SPDYE6P0CI01 402 aa16.93■□□□□ 0.3
SMC4-223ENST00000493695 SPDYE2Q495Y8 402 aa16.93■□□□□ 0.3
SMC4-223ENST00000493695 MKRN4PQ13434 485 aaPredicted RBP16.91■□□□□ 0.3
SMC4-223ENST00000493695 PITPNM1O00562 1244 aa16.85■□□□□ 0.29
SMC4-223ENST00000493695 ZNF692Q9BU19 519 aaPredicted RBP16.85■□□□□ 0.29
SMC4-223ENST00000493695 PIP4P2Q8N4L2 257 aa16.75■□□□□ 0.27
SMC4-223ENST00000493695 CLEC11AQ9Y240 323 aa16.75■□□□□ 0.27
SMC4-223ENST00000493695 SPDYE1Q8NFV5 336 aaPredicted RBP16.65■□□□□ 0.26
SMC4-223ENST00000493695 SSUH2Q9Y2M2 353 aa16.64■□□□□ 0.25
SMC4-223ENST00000493695 FXR2P51116 673 aaKnown RBP eCLIP16.61■□□□□ 0.25
SMC4-223ENST00000493695 PABPN1Q86U42 306 aaKnown RBP eCLIP16.58■□□□□ 0.24
SMC4-223ENST00000493695 HAX1O00165 279 aa16.56■□□□□ 0.24
SMC4-223ENST00000493695 PRKAR2AP13861 404 aaKnown RBP16.48■□□□□ 0.23
SMC4-223ENST00000493695 PRR29P0C7W0 189 aa16.42■□□□□ 0.22
SMC4-223ENST00000493695 SP7Q8TDD2 431 aaPredicted RBP16.42■□□□□ 0.22
SMC4-223ENST00000493695 CHADLQ6NUI6 762 aa16.34■□□□□ 0.21
SMC4-223ENST00000493695 SPDYE4A6NLX3 237 aa16.29■□□□□ 0.2
SMC4-223ENST00000493695 EVX2Q03828 476 aa16.21■□□□□ 0.19
SMC4-223ENST00000493695 STAG3Q9UJ98 1225 aa16.12■□□□□ 0.17
SMC4-223ENST00000493695 C19orf67A6NJJ6 358 aa16.08■□□□□ 0.16
SMC4-223ENST00000493695 FARP1Q9Y4F1 1045 aaPredicted RBP16.05■□□□□ 0.16
SMC4-223ENST00000493695 CD44P16070 742 aaKnown RBP15.97■□□□□ 0.15
SMC4-223ENST00000493695 CREBZFQ9NS37 354 aa15.92■□□□□ 0.14
SMC4-223ENST00000493695 GABBR2O75899 941 aa15.88■□□□□ 0.13
SMC4-223ENST00000493695 ZRANB1Q9UGI0 708 aa15.79■□□□□ 0.12
SMC4-223ENST00000493695 NPM1P06748 294 aaKnown RBP eCLIP15.74■□□□□ 0.11
SMC4-223ENST00000493695 PAK3O75914 559 aaPredicted RBP15.73■□□□□ 0.11
SMC4-223ENST00000493695 PROM2Q8N271 834 aa15.7■□□□□ 0.1
SMC4-223ENST00000493695 FKBP8Q14318 412 aa15.64■□□□□ 0.09
SMC4-223ENST00000493695 PLEKHG5O94827 1062 aa15.63■□□□□ 0.09
SMC4-223ENST00000493695 CLCN6P51797 869 aa15.62■□□□□ 0.09
SMC4-223ENST00000493695 ZNF579Q8NAF0 562 aaKnown RBP15.62■□□□□ 0.09
SMC4-223ENST00000493695 MIER1Q8N108 512 aa15.61■□□□□ 0.09
SMC4-223ENST00000493695 DCBLD2Q96PD2 775 aa15.6■□□□□ 0.09
SMC4-223ENST00000493695 MNX1P50219 401 aaPredicted RBP15.59■□□□□ 0.09
SMC4-223ENST00000493695 PHF12Q96QT6 1004 aa15.55■□□□□ 0.08
SMC4-223ENST00000493695 PLCD3Q8N3E9 789 aa15.52■□□□□ 0.08
SMC4-223ENST00000493695 TSPYL2Q9H2G4 693 aaPredicted RBP15.51■□□□□ 0.07
SMC4-223ENST00000493695 GALR2O43603 387 aaPredicted RBP15.49■□□□□ 0.07
SMC4-223ENST00000493695 POTEIP0CG38 1075 aa15.47■□□□□ 0.07
SMC4-223ENST00000493695 LHX8Q68G74 356 aa15.44■□□□□ 0.06
SMC4-223ENST00000493695 ZBTB47Q9UFB7 747 aaPredicted RBP15.33■□□□□ 0.04
SMC4-223ENST00000493695 MS4A3Q96HJ5 214 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms